Gchil2979.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2979.t1
Unique NameGchil2979.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length310
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:665652..666581 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog159749.K0RP08
Max annot lvl159749.K0RP08|-
Evalue3.55e-18
EggNOG OGs2E1M9@1|root,2S8XU@2759|Eukaryota,2XG8W@2836|Bacillariophyta
DescriptionHelicase associated domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2979Gchil2979Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 665652..666581 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2979.t1.stop1Gchil2979.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 665652..665654 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2979.t1.CDS1Gchil2979.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 665652..666581 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2979.t1.exon1Gchil2979.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 665652..666581 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2979.t1.start1Gchil2979.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 666579..666581 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2979.t1Gchil2979.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 665652..666581 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2979.t1 ID=Gchil2979.t1|Name=Gchil2979.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=310bp
MWVAKMRANRRKNKLPLHRVRKLDTIGFIWNTAEADWMDKFNKLLRFRAL
HGHSCVPFNEGDLGWWVNTQRQSKRKGKLSAHRERLLNDAAFIWNPQHFL
ADRRRRAARARAAAAAAAATAASEPPVSCKRALPQLPQLSLPPSQCATPQ
QPSAKRHKPPQSPLIQKPLFHPLHLSSPCAHAASFQHTHTHHHTPVSILN
APITATPLAARAPFATPTADKPDAHSIASLLSPSMEPPRIPKLVLPSRSS
LYSNAPATDTTALVSYSQLPSLHAANPALPPVISAGPPTAAFVLPPISSL
KVLRNPTPF*
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spliced messenger RNA

>Gchil2979.t1 ID=Gchil2979.t1|Name=Gchil2979.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=930bp|location=Sequence derived from alignment at tig00000106_pilon:665652..666581- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGGTCGCCAAGATGCGCGCCAATCGTCGCAAAAACAAGCTCCCGCT
GCATCGCGTGCGCAAGCTCGACACTATTGGCTTCATCTGGAACACCGCCG
AGGCCGATTGGATGGACAAATTTAACAAGCTCTTGCGCTTTCGTGCCCTG
CACGGTCACTCTTGCGTCCCGTTCAACGAGGGAGACCTCGGCTGGTGGGT
CAACACCCAGCGCCAGAGCAAGCGCAAGGGCAAGCTCTCCGCCCACCGCG
AGCGTCTGCTCAACGACGCCGCCTTCATTTGGAACCCGCAGCACTTTTTG
GCCGACCGTCGTCGCCGCGCCGCCCGCGCCCGCGCCGCCGCCGCTGCCGC
TGCCGCCACAGCTGCTTCCGAACCGCCCGTTTCGTGCAAGAGGGCCCTGC
CGCAATTGCCGCAACTCTCGCTGCCGCCATCGCAATGTGCCACCCCACAG
CAGCCGTCTGCAAAGCGTCACAAGCCCCCGCAATCGCCCCTCATCCAAAA
GCCCCTGTTCCATCCGCTGCACCTGTCGTCGCCCTGTGCGCACGCTGCTT
CCTTCCAGCACACCCACACCCACCACCACACCCCGGTCAGTATTCTCAAT
GCGCCCATAACCGCCACACCGCTTGCAGCCCGTGCTCCGTTCGCTACTCC
CACCGCCGACAAGCCTGATGCCCACTCCATAGCGTCCTTGTTGTCGCCGT
CTATGGAGCCTCCTCGTATCCCGAAACTCGTGCTGCCCTCGCGTTCTTCC
CTGTATTCCAATGCTCCCGCCACCGATACGACTGCCCTCGTGTCTTACTC
ACAACTGCCGTCGCTTCACGCCGCCAATCCCGCCCTACCGCCTGTCATCT
CCGCCGGCCCCCCAACGGCCGCATTCGTACTGCCGCCCATTTCGAGCCTA
AAAGTTCTCAGAAACCCTACACCGTTCTAG
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protein sequence of Gchil2979.t1

>Gchil2979.t1 ID=Gchil2979.t1|Name=Gchil2979.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=310bp
MWVAKMRANRRKNKLPLHRVRKLDTIGFIWNTAEADWMDKFNKLLRFRAL
HGHSCVPFNEGDLGWWVNTQRQSKRKGKLSAHRERLLNDAAFIWNPQHFL
ADRRRRAARARAAAAAAAATAASEPPVSCKRALPQLPQLSLPPSQCATPQ
QPSAKRHKPPQSPLIQKPLFHPLHLSSPCAHAASFQHTHTHHHTPVSILN
APITATPLAARAPFATPTADKPDAHSIASLLSPSMEPPRIPKLVLPSRSS
LYSNAPATDTTALVSYSQLPSLHAANPALPPVISAGPPTAAFVLPPISSL
KVLRNPTPF*
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mRNA from alignment at tig00000106_pilon:665652..666581-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2979.t1 ID=Gchil2979.t1|Name=Gchil2979.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=930bp|location=Sequence derived from alignment at tig00000106_pilon:665652..666581- (Gracilaria chilensis NLEC103_M9 male)
ATGTGGGTCGCCAAGATGCGCGCCAATCGTCGCAAAAACAAGCTCCCGCT
GCATCGCGTGCGCAAGCTCGACACTATTGGCTTCATCTGGAACACCGCCG
AGGCCGATTGGATGGACAAATTTAACAAGCTCTTGCGCTTTCGTGCCCTG
CACGGTCACTCTTGCGTCCCGTTCAACGAGGGAGACCTCGGCTGGTGGGT
CAACACCCAGCGCCAGAGCAAGCGCAAGGGCAAGCTCTCCGCCCACCGCG
AGCGTCTGCTCAACGACGCCGCCTTCATTTGGAACCCGCAGCACTTTTTG
GCCGACCGTCGTCGCCGCGCCGCCCGCGCCCGCGCCGCCGCCGCTGCCGC
TGCCGCCACAGCTGCTTCCGAACCGCCCGTTTCGTGCAAGAGGGCCCTGC
CGCAATTGCCGCAACTCTCGCTGCCGCCATCGCAATGTGCCACCCCACAG
CAGCCGTCTGCAAAGCGTCACAAGCCCCCGCAATCGCCCCTCATCCAAAA
GCCCCTGTTCCATCCGCTGCACCTGTCGTCGCCCTGTGCGCACGCTGCTT
CCTTCCAGCACACCCACACCCACCACCACACCCCGGTCAGTATTCTCAAT
GCGCCCATAACCGCCACACCGCTTGCAGCCCGTGCTCCGTTCGCTACTCC
CACCGCCGACAAGCCTGATGCCCACTCCATAGCGTCCTTGTTGTCGCCGT
CTATGGAGCCTCCTCGTATCCCGAAACTCGTGCTGCCCTCGCGTTCTTCC
CTGTATTCCAATGCTCCCGCCACCGATACGACTGCCCTCGTGTCTTACTC
ACAACTGCCGTCGCTTCACGCCGCCAATCCCGCCCTACCGCCTGTCATCT
CCGCCGGCCCCCCAACGGCCGCATTCGTACTGCCGCCCATTTCGAGCCTA
AAAGTTCTCAGAAACCCTACACCGTTCTAG
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Coding sequence (CDS) from alignment at tig00000106_pilon:665652..666581-

>Gchil2979.t1 ID=Gchil2979.t1|Name=Gchil2979.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=930bp|location=Sequence derived from alignment at tig00000106_pilon:665652..666581- (Gracilaria chilensis NLEC103_M9 male)
ATGTGGGTCGCCAAGATGCGCGCCAATCGTCGCAAAAACAAGCTCCCGCT
GCATCGCGTGCGCAAGCTCGACACTATTGGCTTCATCTGGAACACCGCCG
AGGCCGATTGGATGGACAAATTTAACAAGCTCTTGCGCTTTCGTGCCCTG
CACGGTCACTCTTGCGTCCCGTTCAACGAGGGAGACCTCGGCTGGTGGGT
CAACACCCAGCGCCAGAGCAAGCGCAAGGGCAAGCTCTCCGCCCACCGCG
AGCGTCTGCTCAACGACGCCGCCTTCATTTGGAACCCGCAGCACTTTTTG
GCCGACCGTCGTCGCCGCGCCGCCCGCGCCCGCGCCGCCGCCGCTGCCGC
TGCCGCCACAGCTGCTTCCGAACCGCCCGTTTCGTGCAAGAGGGCCCTGC
CGCAATTGCCGCAACTCTCGCTGCCGCCATCGCAATGTGCCACCCCACAG
CAGCCGTCTGCAAAGCGTCACAAGCCCCCGCAATCGCCCCTCATCCAAAA
GCCCCTGTTCCATCCGCTGCACCTGTCGTCGCCCTGTGCGCACGCTGCTT
CCTTCCAGCACACCCACACCCACCACCACACCCCGGTCAGTATTCTCAAT
GCGCCCATAACCGCCACACCGCTTGCAGCCCGTGCTCCGTTCGCTACTCC
CACCGCCGACAAGCCTGATGCCCACTCCATAGCGTCCTTGTTGTCGCCGT
CTATGGAGCCTCCTCGTATCCCGAAACTCGTGCTGCCCTCGCGTTCTTCC
CTGTATTCCAATGCTCCCGCCACCGATACGACTGCCCTCGTGTCTTACTC
ACAACTGCCGTCGCTTCACGCCGCCAATCCCGCCCTACCGCCTGTCATCT
CCGCCGGCCCCCCAACGGCCGCATTCGTACTGCCGCCCATTTCGAGCCTA
AAAGTTCTCAGAAACCCTACACCGTTCTAG
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