Gchil2978.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2978.t1
Unique NameGchil2978.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length433
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:663037..664335 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706002.1
Preferred nameGTF2E1
PFAMsTFIIE-A_C,TFIIE_alpha,TF_Zn_Ribbon
Max annot lvl2759|Eukaryota
KEGG koko:K03136,ko:K06636,ko:K20607
KEGG Pathwayko03022,ko04016,ko04110,ko04111,ko04113,ko04114,ko05169,ko05203,ko05418,map03022,map04016,map04110,map04111,map04113,map04114,map05169,map05203,map05418
GOsGO:0000428,GO:0000988,GO:0000989,GO:0000990,GO:0000991,GO:0000993,GO:0001076,GO:0001098,GO:0001099,GO:0001112,GO:0001113,GO:0001120,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005673,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009301,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016073,GO:0016591,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019899,GO:0030880,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0032993,GO:0034367,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042795,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0044877,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0055029,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0070063,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090575,GO:0097550,GO:0097659,GO:0098781,GO:0140110,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1990234,GO:2000112,GO:2001141
Evalue1.59e-20
EggNOG OGsCOG1675@1|root,KOG2593@2759|Eukaryota
EC2.7.12.2
Descriptiontranscription initiation from RNA polymerase II promoter
COG categoryK
BRITEko00000,ko00001,ko01000,ko01001,ko03021,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2978Gchil2978Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 663037..664335 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2978.t1.start1Gchil2978.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 663037..663039 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2978.t1.CDS1Gchil2978.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 663037..664335 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2978.t1.exon1Gchil2978.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 663037..664335 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2978.t1.stop1Gchil2978.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 664333..664335 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2978.t1Gchil2978.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 663037..664335 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2978.t1 ID=Gchil2978.t1|Name=Gchil2978.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=433bp
MAEVPREAVEFARRLVRAFYSDEFVVLLDAVLRQNNFVSHRDLAYRLRMQ
PKEMRQILVRMEHARLMRRDKREQKRITVRDGKKQTRVIQTDYWYVPLSE
MIDAFMYRVWRITKELDEKRNLVAEGQKYICTRCGRKFRLLDILAGERPD
GQFECTGMNALALPCKGLIREQDNSAEVREMERLRSMIDEELRTLRERAD
HCSRLEIPLHPLEGADEQTWGERVPETVGARGERVDEDGIDMALKAEEEE
RKKNSGEIVLEPKQRERKDGTFIPEKPSWFKEGGGEEEEEWDDTEQHVLD
NKSGTAASFAREEDEKAYYDMYVKQIYGVSAAAQHVEGRTEPVTDAVIEL
DANKDVVTVESNEEEANVDGEAEADTRQKEDVMVSVAGKMRKLSEVTNEM
AEQMTPEEYKAYFVLAQPKSTMDDDDDFDEFE*
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spliced messenger RNA

>Gchil2978.t1 ID=Gchil2978.t1|Name=Gchil2978.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1299bp|location=Sequence derived from alignment at tig00000106_pilon:663037..664335+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGAAGTGCCGCGTGAAGCAGTGGAGTTTGCGAGAAGGCTTGTTCG
AGCCTTCTACTCGGATGAGTTTGTCGTACTACTCGACGCAGTGCTGCGAC
AAAACAACTTTGTCTCACACAGAGATTTGGCCTATCGACTTCGCATGCAG
CCCAAGGAAATGCGCCAGATCCTCGTGCGAATGGAGCATGCACGATTGAT
GCGACGCGACAAGCGCGAGCAAAAGCGCATCACTGTGCGCGACGGTAAAA
AGCAGACGCGCGTCATTCAAACAGACTACTGGTACGTCCCTCTATCAGAA
ATGATTGACGCCTTTATGTACAGGGTGTGGCGAATCACCAAAGAGCTCGA
TGAAAAGCGTAATCTTGTTGCTGAGGGGCAAAAATACATCTGCACGCGCT
GTGGCAGAAAGTTTAGGCTACTAGACATTCTGGCTGGTGAACGCCCGGAT
GGGCAGTTTGAATGCACTGGTATGAACGCCCTTGCACTGCCATGCAAAGG
CCTTATACGGGAGCAAGACAACAGCGCAGAAGTACGCGAAATGGAGAGAC
TCCGAAGTATGATCGATGAAGAGCTGCGTACTCTTCGCGAGCGCGCCGAT
CATTGCTCACGGCTGGAGATTCCGCTTCATCCTCTCGAGGGCGCCGATGA
GCAAACATGGGGTGAGCGAGTACCGGAGACAGTTGGAGCTCGGGGTGAGA
GAGTGGATGAAGATGGGATTGACATGGCGCTCAAGGCAGAAGAGGAGGAG
AGAAAGAAGAATTCTGGGGAAATTGTTCTTGAGCCAAAGCAAAGAGAACG
TAAGGATGGCACTTTCATTCCTGAAAAACCGAGCTGGTTCAAGGAAGGGG
GTGGCGAAGAAGAGGAAGAGTGGGATGACACTGAGCAGCACGTGCTCGAT
AACAAATCTGGAACCGCTGCCAGTTTTGCTCGCGAAGAGGACGAAAAAGC
ATACTACGACATGTACGTCAAACAGATCTATGGCGTGAGCGCCGCGGCCC
AGCACGTGGAAGGCAGAACAGAACCCGTCACTGATGCAGTGATTGAATTG
GATGCCAATAAAGACGTGGTGACAGTGGAGTCTAACGAAGAGGAGGCAAA
TGTGGACGGCGAGGCTGAAGCCGACACGCGACAGAAAGAAGACGTTATGG
TTTCTGTAGCGGGCAAAATGAGAAAACTATCTGAGGTGACTAACGAAATG
GCTGAGCAAATGACGCCGGAAGAATACAAAGCGTACTTCGTTTTGGCGCA
GCCAAAGAGCACGATGGACGATGACGATGATTTTGACGAGTTTGAATAA
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protein sequence of Gchil2978.t1

>Gchil2978.t1 ID=Gchil2978.t1|Name=Gchil2978.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=433bp
MAEVPREAVEFARRLVRAFYSDEFVVLLDAVLRQNNFVSHRDLAYRLRMQ
PKEMRQILVRMEHARLMRRDKREQKRITVRDGKKQTRVIQTDYWYVPLSE
MIDAFMYRVWRITKELDEKRNLVAEGQKYICTRCGRKFRLLDILAGERPD
GQFECTGMNALALPCKGLIREQDNSAEVREMERLRSMIDEELRTLRERAD
HCSRLEIPLHPLEGADEQTWGERVPETVGARGERVDEDGIDMALKAEEEE
RKKNSGEIVLEPKQRERKDGTFIPEKPSWFKEGGGEEEEEWDDTEQHVLD
NKSGTAASFAREEDEKAYYDMYVKQIYGVSAAAQHVEGRTEPVTDAVIEL
DANKDVVTVESNEEEANVDGEAEADTRQKEDVMVSVAGKMRKLSEVTNEM
AEQMTPEEYKAYFVLAQPKSTMDDDDDFDEFE*
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mRNA from alignment at tig00000106_pilon:663037..664335+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2978.t1 ID=Gchil2978.t1|Name=Gchil2978.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1299bp|location=Sequence derived from alignment at tig00000106_pilon:663037..664335+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTGAAGTGCCGCGTGAAGCAGTGGAGTTTGCGAGAAGGCTTGTTCG
AGCCTTCTACTCGGATGAGTTTGTCGTACTACTCGACGCAGTGCTGCGAC
AAAACAACTTTGTCTCACACAGAGATTTGGCCTATCGACTTCGCATGCAG
CCCAAGGAAATGCGCCAGATCCTCGTGCGAATGGAGCATGCACGATTGAT
GCGACGCGACAAGCGCGAGCAAAAGCGCATCACTGTGCGCGACGGTAAAA
AGCAGACGCGCGTCATTCAAACAGACTACTGGTACGTCCCTCTATCAGAA
ATGATTGACGCCTTTATGTACAGGGTGTGGCGAATCACCAAAGAGCTCGA
TGAAAAGCGTAATCTTGTTGCTGAGGGGCAAAAATACATCTGCACGCGCT
GTGGCAGAAAGTTTAGGCTACTAGACATTCTGGCTGGTGAACGCCCGGAT
GGGCAGTTTGAATGCACTGGTATGAACGCCCTTGCACTGCCATGCAAAGG
CCTTATACGGGAGCAAGACAACAGCGCAGAAGTACGCGAAATGGAGAGAC
TCCGAAGTATGATCGATGAAGAGCTGCGTACTCTTCGCGAGCGCGCCGAT
CATTGCTCACGGCTGGAGATTCCGCTTCATCCTCTCGAGGGCGCCGATGA
GCAAACATGGGGTGAGCGAGTACCGGAGACAGTTGGAGCTCGGGGTGAGA
GAGTGGATGAAGATGGGATTGACATGGCGCTCAAGGCAGAAGAGGAGGAG
AGAAAGAAGAATTCTGGGGAAATTGTTCTTGAGCCAAAGCAAAGAGAACG
TAAGGATGGCACTTTCATTCCTGAAAAACCGAGCTGGTTCAAGGAAGGGG
GTGGCGAAGAAGAGGAAGAGTGGGATGACACTGAGCAGCACGTGCTCGAT
AACAAATCTGGAACCGCTGCCAGTTTTGCTCGCGAAGAGGACGAAAAAGC
ATACTACGACATGTACGTCAAACAGATCTATGGCGTGAGCGCCGCGGCCC
AGCACGTGGAAGGCAGAACAGAACCCGTCACTGATGCAGTGATTGAATTG
GATGCCAATAAAGACGTGGTGACAGTGGAGTCTAACGAAGAGGAGGCAAA
TGTGGACGGCGAGGCTGAAGCCGACACGCGACAGAAAGAAGACGTTATGG
TTTCTGTAGCGGGCAAAATGAGAAAACTATCTGAGGTGACTAACGAAATG
GCTGAGCAAATGACGCCGGAAGAATACAAAGCGTACTTCGTTTTGGCGCA
GCCAAAGAGCACGATGGACGATGACGATGATTTTGACGAGTTTGAATAA
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Coding sequence (CDS) from alignment at tig00000106_pilon:663037..664335+

>Gchil2978.t1 ID=Gchil2978.t1|Name=Gchil2978.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1299bp|location=Sequence derived from alignment at tig00000106_pilon:663037..664335+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTGAAGTGCCGCGTGAAGCAGTGGAGTTTGCGAGAAGGCTTGTTCG
AGCCTTCTACTCGGATGAGTTTGTCGTACTACTCGACGCAGTGCTGCGAC
AAAACAACTTTGTCTCACACAGAGATTTGGCCTATCGACTTCGCATGCAG
CCCAAGGAAATGCGCCAGATCCTCGTGCGAATGGAGCATGCACGATTGAT
GCGACGCGACAAGCGCGAGCAAAAGCGCATCACTGTGCGCGACGGTAAAA
AGCAGACGCGCGTCATTCAAACAGACTACTGGTACGTCCCTCTATCAGAA
ATGATTGACGCCTTTATGTACAGGGTGTGGCGAATCACCAAAGAGCTCGA
TGAAAAGCGTAATCTTGTTGCTGAGGGGCAAAAATACATCTGCACGCGCT
GTGGCAGAAAGTTTAGGCTACTAGACATTCTGGCTGGTGAACGCCCGGAT
GGGCAGTTTGAATGCACTGGTATGAACGCCCTTGCACTGCCATGCAAAGG
CCTTATACGGGAGCAAGACAACAGCGCAGAAGTACGCGAAATGGAGAGAC
TCCGAAGTATGATCGATGAAGAGCTGCGTACTCTTCGCGAGCGCGCCGAT
CATTGCTCACGGCTGGAGATTCCGCTTCATCCTCTCGAGGGCGCCGATGA
GCAAACATGGGGTGAGCGAGTACCGGAGACAGTTGGAGCTCGGGGTGAGA
GAGTGGATGAAGATGGGATTGACATGGCGCTCAAGGCAGAAGAGGAGGAG
AGAAAGAAGAATTCTGGGGAAATTGTTCTTGAGCCAAAGCAAAGAGAACG
TAAGGATGGCACTTTCATTCCTGAAAAACCGAGCTGGTTCAAGGAAGGGG
GTGGCGAAGAAGAGGAAGAGTGGGATGACACTGAGCAGCACGTGCTCGAT
AACAAATCTGGAACCGCTGCCAGTTTTGCTCGCGAAGAGGACGAAAAAGC
ATACTACGACATGTACGTCAAACAGATCTATGGCGTGAGCGCCGCGGCCC
AGCACGTGGAAGGCAGAACAGAACCCGTCACTGATGCAGTGATTGAATTG
GATGCCAATAAAGACGTGGTGACAGTGGAGTCTAACGAAGAGGAGGCAAA
TGTGGACGGCGAGGCTGAAGCCGACACGCGACAGAAAGAAGACGTTATGG
TTTCTGTAGCGGGCAAAATGAGAAAACTATCTGAGGTGACTAACGAAATG
GCTGAGCAAATGACGCCGGAAGAATACAAAGCGTACTTCGTTTTGGCGCA
GCCAAAGAGCACGATGGACGATGACGATGATTTTGACGAGTTTGAATAA
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