Gchil2974.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2974.t1
Unique NameGchil2974.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length472
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:655879..657294 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704083.1
PFAMsUCH
Max annot lvl2759|Eukaryota
KEGG koko:K11842,ko:K11855
Evalue3.1e-49
EggNOG OGsKOG1865@1|root,KOG1865@2759|Eukaryota
EC3.4.19.12
Descriptionubiquitinyl hydrolase activity
COG categoryO
BRITEko00000,ko01000,ko01002,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2974Gchil2974Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 655879..657294 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2974.t1.stop1Gchil2974.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 655879..655881 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2974.t1.CDS1Gchil2974.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 655879..657294 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2974.t1.exon1Gchil2974.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 655879..657294 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2974.t1.start1Gchil2974.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 657292..657294 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2974.t1Gchil2974.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 655879..657294 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2974.t1 ID=Gchil2974.t1|Name=Gchil2974.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=472bp
MPDCTPSSSSPTPPPTPPPLPHPPGLLNLGNTCYVNSVLQVLYNQPLFRH
SLARWQCPPAPDFASELVSALQLLFRTLDRTQLLQRQSSRNTVLPTADDD
ECDTLDTDPLDDLRENVDYVSPSNFISLLRDERCDFEAVGQQDAHEFLRF
LLDKVDTALKLHPTAVDLHSPEAPHSPPTQRPPTSAQPLGRIRGGEASKP
ENPDVPSNSVAAPITVKGTESSPRLAKRRRVAEPSQPFESSSPAETTRPR
KRFRPTLVPDLFEGQAVTATRCDFCETMSNRAEQFLDVSLPVEAGRNLNW
AWSRTGAKEKLVGVNKYSCDICNTYTEAQRWWRVVTLPTVLTVHLKLFAF
DSPYTSSGAKVAVAMPCPFNMRLSEWCTDDCEQRDTQYRLSAVIVHEGNG
ASSGHYYSYIYRDDKAEWYMLDDSVVSVVSQRDLQESLFTSARSRRTAYL
LFYTQHSSSDAAAPTQSDSTS*
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spliced messenger RNA

>Gchil2974.t1 ID=Gchil2974.t1|Name=Gchil2974.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1416bp|location=Sequence derived from alignment at tig00000106_pilon:655879..657294- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTGACTGCACTCCGTCTTCTTCCTCGCCCACTCCCCCCCCCACTCC
GCCCCCTCTTCCGCACCCCCCCGGCCTCCTCAACCTCGGCAATACCTGCT
ACGTCAACTCAGTGCTGCAGGTTCTCTACAACCAGCCGCTCTTTCGCCAC
TCGCTCGCCCGCTGGCAGTGCCCTCCTGCCCCCGACTTTGCCTCCGAGCT
TGTCAGCGCCTTACAGCTGCTCTTTCGCACCCTTGACCGCACCCAGCTAC
TTCAGCGCCAATCCTCCAGAAACACCGTCCTCCCCACCGCCGACGACGAC
GAGTGCGACACCCTCGACACCGATCCGCTCGACGATCTGCGCGAAAACGT
CGACTACGTCTCGCCTTCCAACTTCATCTCTCTCTTGCGCGATGAGCGAT
GCGACTTCGAGGCCGTCGGCCAGCAGGATGCGCACGAGTTCCTTCGATTC
CTGCTCGATAAGGTCGACACCGCTCTCAAACTCCACCCAACCGCCGTCGA
CCTTCACTCACCAGAAGCGCCCCACTCCCCGCCTACCCAACGCCCGCCCA
CCTCCGCCCAACCGCTCGGTCGCATACGAGGCGGCGAAGCCTCCAAACCC
GAAAACCCGGACGTGCCAAGTAATTCGGTCGCCGCTCCTATCACCGTCAA
AGGCACCGAGTCCTCCCCGCGACTGGCGAAGAGAAGACGCGTCGCAGAAC
CCTCGCAACCTTTCGAATCCTCTTCGCCCGCGGAGACCACTCGTCCGCGC
AAGCGATTCCGCCCCACGCTCGTGCCGGACCTATTCGAGGGCCAAGCAGT
CACCGCCACGCGTTGTGACTTTTGCGAAACCATGTCAAACCGCGCCGAAC
AATTTTTGGATGTATCTCTACCAGTGGAGGCTGGACGCAATTTGAACTGG
GCTTGGTCCAGGACGGGCGCCAAGGAGAAGCTCGTGGGTGTCAACAAGTA
TAGTTGCGATATTTGCAACACCTACACAGAAGCTCAAAGATGGTGGCGCG
TGGTGACCCTACCAACAGTGTTGACCGTTCACCTTAAGCTCTTTGCATTC
GACTCTCCCTACACGAGCTCCGGCGCAAAGGTTGCCGTCGCAATGCCTTG
TCCCTTCAACATGCGCTTGTCCGAGTGGTGCACAGACGATTGCGAACAGC
GAGACACCCAGTATCGTCTAAGCGCCGTAATCGTACACGAAGGAAATGGC
GCTTCTTCGGGTCATTATTACTCGTACATATACCGAGACGACAAGGCAGA
GTGGTATATGCTTGATGACTCCGTCGTCTCAGTTGTATCCCAGAGAGACC
TCCAAGAGAGCCTTTTCACCTCAGCAAGGTCACGTCGAACGGCATATCTC
TTGTTTTACACCCAGCATTCGTCATCAGACGCAGCGGCACCGACCCAAAG
CGACTCTACGAGCTAG
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protein sequence of Gchil2974.t1

>Gchil2974.t1 ID=Gchil2974.t1|Name=Gchil2974.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=472bp
MPDCTPSSSSPTPPPTPPPLPHPPGLLNLGNTCYVNSVLQVLYNQPLFRH
SLARWQCPPAPDFASELVSALQLLFRTLDRTQLLQRQSSRNTVLPTADDD
ECDTLDTDPLDDLRENVDYVSPSNFISLLRDERCDFEAVGQQDAHEFLRF
LLDKVDTALKLHPTAVDLHSPEAPHSPPTQRPPTSAQPLGRIRGGEASKP
ENPDVPSNSVAAPITVKGTESSPRLAKRRRVAEPSQPFESSSPAETTRPR
KRFRPTLVPDLFEGQAVTATRCDFCETMSNRAEQFLDVSLPVEAGRNLNW
AWSRTGAKEKLVGVNKYSCDICNTYTEAQRWWRVVTLPTVLTVHLKLFAF
DSPYTSSGAKVAVAMPCPFNMRLSEWCTDDCEQRDTQYRLSAVIVHEGNG
ASSGHYYSYIYRDDKAEWYMLDDSVVSVVSQRDLQESLFTSARSRRTAYL
LFYTQHSSSDAAAPTQSDSTS*
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mRNA from alignment at tig00000106_pilon:655879..657294-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2974.t1 ID=Gchil2974.t1|Name=Gchil2974.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1416bp|location=Sequence derived from alignment at tig00000106_pilon:655879..657294- (Gracilaria chilensis NLEC103_M9 male)
ATGCCTGACTGCACTCCGTCTTCTTCCTCGCCCACTCCCCCCCCCACTCC
GCCCCCTCTTCCGCACCCCCCCGGCCTCCTCAACCTCGGCAATACCTGCT
ACGTCAACTCAGTGCTGCAGGTTCTCTACAACCAGCCGCTCTTTCGCCAC
TCGCTCGCCCGCTGGCAGTGCCCTCCTGCCCCCGACTTTGCCTCCGAGCT
TGTCAGCGCCTTACAGCTGCTCTTTCGCACCCTTGACCGCACCCAGCTAC
TTCAGCGCCAATCCTCCAGAAACACCGTCCTCCCCACCGCCGACGACGAC
GAGTGCGACACCCTCGACACCGATCCGCTCGACGATCTGCGCGAAAACGT
CGACTACGTCTCGCCTTCCAACTTCATCTCTCTCTTGCGCGATGAGCGAT
GCGACTTCGAGGCCGTCGGCCAGCAGGATGCGCACGAGTTCCTTCGATTC
CTGCTCGATAAGGTCGACACCGCTCTCAAACTCCACCCAACCGCCGTCGA
CCTTCACTCACCAGAAGCGCCCCACTCCCCGCCTACCCAACGCCCGCCCA
CCTCCGCCCAACCGCTCGGTCGCATACGAGGCGGCGAAGCCTCCAAACCC
GAAAACCCGGACGTGCCAAGTAATTCGGTCGCCGCTCCTATCACCGTCAA
AGGCACCGAGTCCTCCCCGCGACTGGCGAAGAGAAGACGCGTCGCAGAAC
CCTCGCAACCTTTCGAATCCTCTTCGCCCGCGGAGACCACTCGTCCGCGC
AAGCGATTCCGCCCCACGCTCGTGCCGGACCTATTCGAGGGCCAAGCAGT
CACCGCCACGCGTTGTGACTTTTGCGAAACCATGTCAAACCGCGCCGAAC
AATTTTTGGATGTATCTCTACCAGTGGAGGCTGGACGCAATTTGAACTGG
GCTTGGTCCAGGACGGGCGCCAAGGAGAAGCTCGTGGGTGTCAACAAGTA
TAGTTGCGATATTTGCAACACCTACACAGAAGCTCAAAGATGGTGGCGCG
TGGTGACCCTACCAACAGTGTTGACCGTTCACCTTAAGCTCTTTGCATTC
GACTCTCCCTACACGAGCTCCGGCGCAAAGGTTGCCGTCGCAATGCCTTG
TCCCTTCAACATGCGCTTGTCCGAGTGGTGCACAGACGATTGCGAACAGC
GAGACACCCAGTATCGTCTAAGCGCCGTAATCGTACACGAAGGAAATGGC
GCTTCTTCGGGTCATTATTACTCGTACATATACCGAGACGACAAGGCAGA
GTGGTATATGCTTGATGACTCCGTCGTCTCAGTTGTATCCCAGAGAGACC
TCCAAGAGAGCCTTTTCACCTCAGCAAGGTCACGTCGAACGGCATATCTC
TTGTTTTACACCCAGCATTCGTCATCAGACGCAGCGGCACCGACCCAAAG
CGACTCTACGAGCTAG
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Coding sequence (CDS) from alignment at tig00000106_pilon:655879..657294-

>Gchil2974.t1 ID=Gchil2974.t1|Name=Gchil2974.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1416bp|location=Sequence derived from alignment at tig00000106_pilon:655879..657294- (Gracilaria chilensis NLEC103_M9 male)
ATGCCTGACTGCACTCCGTCTTCTTCCTCGCCCACTCCCCCCCCCACTCC
GCCCCCTCTTCCGCACCCCCCCGGCCTCCTCAACCTCGGCAATACCTGCT
ACGTCAACTCAGTGCTGCAGGTTCTCTACAACCAGCCGCTCTTTCGCCAC
TCGCTCGCCCGCTGGCAGTGCCCTCCTGCCCCCGACTTTGCCTCCGAGCT
TGTCAGCGCCTTACAGCTGCTCTTTCGCACCCTTGACCGCACCCAGCTAC
TTCAGCGCCAATCCTCCAGAAACACCGTCCTCCCCACCGCCGACGACGAC
GAGTGCGACACCCTCGACACCGATCCGCTCGACGATCTGCGCGAAAACGT
CGACTACGTCTCGCCTTCCAACTTCATCTCTCTCTTGCGCGATGAGCGAT
GCGACTTCGAGGCCGTCGGCCAGCAGGATGCGCACGAGTTCCTTCGATTC
CTGCTCGATAAGGTCGACACCGCTCTCAAACTCCACCCAACCGCCGTCGA
CCTTCACTCACCAGAAGCGCCCCACTCCCCGCCTACCCAACGCCCGCCCA
CCTCCGCCCAACCGCTCGGTCGCATACGAGGCGGCGAAGCCTCCAAACCC
GAAAACCCGGACGTGCCAAGTAATTCGGTCGCCGCTCCTATCACCGTCAA
AGGCACCGAGTCCTCCCCGCGACTGGCGAAGAGAAGACGCGTCGCAGAAC
CCTCGCAACCTTTCGAATCCTCTTCGCCCGCGGAGACCACTCGTCCGCGC
AAGCGATTCCGCCCCACGCTCGTGCCGGACCTATTCGAGGGCCAAGCAGT
CACCGCCACGCGTTGTGACTTTTGCGAAACCATGTCAAACCGCGCCGAAC
AATTTTTGGATGTATCTCTACCAGTGGAGGCTGGACGCAATTTGAACTGG
GCTTGGTCCAGGACGGGCGCCAAGGAGAAGCTCGTGGGTGTCAACAAGTA
TAGTTGCGATATTTGCAACACCTACACAGAAGCTCAAAGATGGTGGCGCG
TGGTGACCCTACCAACAGTGTTGACCGTTCACCTTAAGCTCTTTGCATTC
GACTCTCCCTACACGAGCTCCGGCGCAAAGGTTGCCGTCGCAATGCCTTG
TCCCTTCAACATGCGCTTGTCCGAGTGGTGCACAGACGATTGCGAACAGC
GAGACACCCAGTATCGTCTAAGCGCCGTAATCGTACACGAAGGAAATGGC
GCTTCTTCGGGTCATTATTACTCGTACATATACCGAGACGACAAGGCAGA
GTGGTATATGCTTGATGACTCCGTCGTCTCAGTTGTATCCCAGAGAGACC
TCCAAGAGAGCCTTTTCACCTCAGCAAGGTCACGTCGAACGGCATATCTC
TTGTTTTACACCCAGCATTCGTCATCAGACGCAGCGGCACCGACCCAAAG
CGACTCTACGAGCTAG
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