Gchil2972.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2972.t1
Unique NameGchil2972.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length104
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:648163..648474 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702923.1
PFAMsCENP-T_C
Max annot lvl2759|Eukaryota
KEGG koko:K11254
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0001101,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005886,GO:0005911,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006950,GO:0006996,GO:0008150,GO:0009414,GO:0009415,GO:0009506,GO:0009507,GO:0009536,GO:0009579,GO:0009628,GO:0009987,GO:0010035,GO:0016020,GO:0016043,GO:0022607,GO:0030054,GO:0031090,GO:0031497,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0042221,GO:0042393,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044437,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0050896,GO:0051276,GO:0055044,GO:0065003,GO:0065004,GO:0070013,GO:0071103,GO:0071824,GO:0071840,GO:0071944,GO:0097159,GO:0098588,GO:0098805,GO:1901363,GO:1901700
Evalue1.09e-60
EggNOG OGsCOG2036@1|root,KOG3467@2759|Eukaryota
Descriptionprotein heterodimerization activity
COG categoryB
BRITEko00000,ko00001,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2972Gchil2972Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 648163..648474 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2972.t1.stop1Gchil2972.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 648163..648165 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2972.t1.CDS1Gchil2972.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 648163..648474 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2972.t1.exon1Gchil2972.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 648163..648474 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2972.t1.start1Gchil2972.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 648472..648474 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2972.t1Gchil2972.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 648163..648474 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2972.t1 ID=Gchil2972.t1|Name=Gchil2972.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=104bp
MAGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGL
IYEETRNVLKVFLESVIRDAVTYTEHARRKTVVSMDVVYALKRQGRTLYG
FGN*
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spliced messenger RNA

>Gchil2972.t1 ID=Gchil2972.t1|Name=Gchil2972.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=312bp|location=Sequence derived from alignment at tig00000106_pilon:648163..648474- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGGTCGCGGAAAAGGCGGTAAGGGACTTGGAAAGGGCGGCGCAAA
GCGTCATCGCAAGGTTCTTCGCGATAACATCCAGGGTATCACCAAGCCCG
CCATTCGTCGTCTGGCTCGCCGAGGTGGTGTGAAGCGTATCTCTGGTCTC
ATATACGAAGAAACTCGCAACGTCCTCAAGGTGTTCCTCGAAAGCGTCAT
CCGCGATGCCGTCACCTACACCGAGCATGCCCGCCGCAAGACCGTTGTCT
CCATGGATGTGGTGTATGCTCTCAAGCGACAGGGTCGCACTCTCTACGGT
TTCGGAAACTAA
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protein sequence of Gchil2972.t1

>Gchil2972.t1 ID=Gchil2972.t1|Name=Gchil2972.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=104bp
MAGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGL
IYEETRNVLKVFLESVIRDAVTYTEHARRKTVVSMDVVYALKRQGRTLYG
FGN*
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mRNA from alignment at tig00000106_pilon:648163..648474-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2972.t1 ID=Gchil2972.t1|Name=Gchil2972.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=312bp|location=Sequence derived from alignment at tig00000106_pilon:648163..648474- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTGGTCGCGGAAAAGGCGGTAAGGGACTTGGAAAGGGCGGCGCAAA
GCGTCATCGCAAGGTTCTTCGCGATAACATCCAGGGTATCACCAAGCCCG
CCATTCGTCGTCTGGCTCGCCGAGGTGGTGTGAAGCGTATCTCTGGTCTC
ATATACGAAGAAACTCGCAACGTCCTCAAGGTGTTCCTCGAAAGCGTCAT
CCGCGATGCCGTCACCTACACCGAGCATGCCCGCCGCAAGACCGTTGTCT
CCATGGATGTGGTGTATGCTCTCAAGCGACAGGGTCGCACTCTCTACGGT
TTCGGAAACTAA
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Coding sequence (CDS) from alignment at tig00000106_pilon:648163..648474-

>Gchil2972.t1 ID=Gchil2972.t1|Name=Gchil2972.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=312bp|location=Sequence derived from alignment at tig00000106_pilon:648163..648474- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTGGTCGCGGAAAAGGCGGTAAGGGACTTGGAAAGGGCGGCGCAAA
GCGTCATCGCAAGGTTCTTCGCGATAACATCCAGGGTATCACCAAGCCCG
CCATTCGTCGTCTGGCTCGCCGAGGTGGTGTGAAGCGTATCTCTGGTCTC
ATATACGAAGAAACTCGCAACGTCCTCAAGGTGTTCCTCGAAAGCGTCAT
CCGCGATGCCGTCACCTACACCGAGCATGCCCGCCGCAAGACCGTTGTCT
CCATGGATGTGGTGTATGCTCTCAAGCGACAGGGTCGCACTCTCTACGGT
TTCGGAAACTAA
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