Gchil2955.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2955.t1
Unique NameGchil2955.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length79
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:459818..460054 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2955Gchil2955Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 459818..460054 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2955.t1.start1Gchil2955.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 459818..459820 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2955.t1.CDS1Gchil2955.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 459818..460054 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2955.t1.exon1Gchil2955.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 459818..460054 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2955.t1.stop1Gchil2955.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 460052..460054 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2955.t1Gchil2955.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 459818..460054 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2955.t1 ID=Gchil2955.t1|Name=Gchil2955.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=79bp
MESNRSGIVNHISNFISDAIDPASAVTGSATNDGLSLMVKAESDDAQLPD
VDEDKLQLEMMLAKVLNHSDISDKAIFN*
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spliced messenger RNA

>Gchil2955.t1 ID=Gchil2955.t1|Name=Gchil2955.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=237bp|location=Sequence derived from alignment at tig00000106_pilon:459818..460054+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGTCGAACCGCTCCGGCATTGTTAATCACATTAGCAATTTTATAAG
CGATGCAATAGATCCGGCCTCGGCTGTGACAGGGAGTGCTACAAATGATG
GTCTGAGTTTGATGGTGAAGGCCGAAAGTGATGACGCGCAGTTACCTGAT
GTCGATGAAGATAAACTACAGCTCGAAATGATGCTGGCCAAGGTACTGAA
TCATTCCGATATATCCGACAAAGCCATCTTCAACTAG
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protein sequence of Gchil2955.t1

>Gchil2955.t1 ID=Gchil2955.t1|Name=Gchil2955.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=79bp
MESNRSGIVNHISNFISDAIDPASAVTGSATNDGLSLMVKAESDDAQLPD
VDEDKLQLEMMLAKVLNHSDISDKAIFN*
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mRNA from alignment at tig00000106_pilon:459818..460054+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2955.t1 ID=Gchil2955.t1|Name=Gchil2955.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=237bp|location=Sequence derived from alignment at tig00000106_pilon:459818..460054+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAGTCGAACCGCTCCGGCATTGTTAATCACATTAGCAATTTTATAAG
CGATGCAATAGATCCGGCCTCGGCTGTGACAGGGAGTGCTACAAATGATG
GTCTGAGTTTGATGGTGAAGGCCGAAAGTGATGACGCGCAGTTACCTGAT
GTCGATGAAGATAAACTACAGCTCGAAATGATGCTGGCCAAGGTACTGAA
TCATTCCGATATATCCGACAAAGCCATCTTCAACTAG
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Coding sequence (CDS) from alignment at tig00000106_pilon:459818..460054+

>Gchil2955.t1 ID=Gchil2955.t1|Name=Gchil2955.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=237bp|location=Sequence derived from alignment at tig00000106_pilon:459818..460054+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAGTCGAACCGCTCCGGCATTGTTAATCACATTAGCAATTTTATAAG
CGATGCAATAGATCCGGCCTCGGCTGTGACAGGGAGTGCTACAAATGATG
GTCTGAGTTTGATGGTGAAGGCCGAAAGTGATGACGCGCAGTTACCTGAT
GTCGATGAAGATAAACTACAGCTCGAAATGATGCTGGCCAAGGTACTGAA
TCATTCCGATATATCCGACAAAGCCATCTTCAACTAG
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