Gchil2953.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2953.t1
Unique NameGchil2953.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length412
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:428014..429349 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2953Gchil2953Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 428014..429349 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2953.t1Gchil2953.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 428014..429349 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2953.t1.stop1Gchil2953.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 428014..428016 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2953.t1.CDS1Gchil2953.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 428014..428861 -
Gchil2953.t1.CDS2Gchil2953.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 428962..429349 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2953.t1.exon1Gchil2953.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 428014..428861 -
Gchil2953.t1.exon2Gchil2953.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 428962..429349 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2953.t1.intron1Gchil2953.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000106_pilon 428862..428961 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2953.t1.start1Gchil2953.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 429347..429349 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2953.t1 ID=Gchil2953.t1|Name=Gchil2953.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=412bp
MNINLGENVVSLITALTTSISLVFLVDIVYRTIVRARKGSVTKRVVLRRY
LVDIYTNPIHLFSNLIGVFKRNPACEDVQGQQIQDFMPSSSVLARTTSKT
GMQLTVFSFGLFTVFVEFLFIFLATKTEQGPVPKTDGFTSKGNIQICHGW
ALAGPLTPLKHGTNEVLVYLGVQNGFRIQVFVEDKNITTNENMKLGLMLE
NGQFYVGQNTQTSVQLKSALERRLSRTNATVLFRSSQSSDNPNPEQRMHP
DSSNIHLPRRRQSILKNSSSIASTMFVVEVSRVNLSETVYTLNSAAVGNE
VTLGIPRMHKYLHGAVQSIMFPTGKNRGISTLRSNRIRNLDEETTPIAFY
NRPWIGVVPSMIICAGLILIWIVLATLGLESGVDARWAWKEFFSDTYTVS
DFGKEVMKQKN*
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spliced messenger RNA

>Gchil2953.t1 ID=Gchil2953.t1|Name=Gchil2953.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1236bp|location=Sequence derived from alignment at tig00000106_pilon:428014..429349- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATATCAACCTTGGTGAAAATGTTGTATCTCTTATCACTGCCCTTAC
CACGTCTATTTCTCTTGTCTTTTTGGTGGATATCGTGTATCGAACGATTG
TTCGTGCCAGAAAGGGTAGCGTCACTAAACGCGTTGTTTTGAGACGATAC
CTTGTAGATATTTATACCAATCCCATACATCTCTTCTCGAATCTTATTGG
AGTTTTCAAAAGAAATCCTGCTTGTGAAGATGTTCAAGGACAACAAATCC
AAGATTTCATGCCATCTTCCTCCGTTTTGGCTAGAACAACTAGCAAAACA
GGCATGCAACTGACCGTGTTTTCATTTGGACTGTTTACCGTATTCGTTGA
GTTTTTGTTCATCTTCCTGGCCACCAAAACAGAACAAGGACCTGTGCCTA
AAACAGATGGCTTCACTTCGAAAGGAAACATACAAATCTGTCATGGATGG
GCTCTTGCGGGGCCTTTGACTCCACTTAAGCATGGAACCAATGAGGTTTT
GGTGTACCTTGGCGTCCAAAACGGATTCAGAATTCAAGTCTTCGTAGAAG
ACAAGAACATTACGACCAACGAAAACATGAAACTAGGGTTGATGCTTGAA
AACGGTCAGTTTTATGTGGGCCAAAACACTCAAACCAGTGTTCAATTGAA
ATCTGCCTTAGAACGACGACTATCAAGAACAAATGCCACTGTTTTATTCC
GTTCTTCACAAAGCTCAGATAATCCAAACCCTGAACAAAGGATGCACCCG
GATTCATCAAACATACATCTTCCGCGTCGCCGACAATCAATCCTCAAAAA
TTCCAGTTCGATTGCATCCACTATGTTTGTGGTTGAAGTGAGCCGGGTAA
ATTTAAGTGAAACCGTTTACACGCTAAATTCTGCTGCAGTGGGGAACGAA
GTAACTCTTGGAATACCAAGAATGCATAAATATCTACATGGTGCAGTGCA
GTCCATCATGTTTCCCACAGGAAAAAATCGCGGGATCAGCACTTTGAGAT
CAAACCGAATTCGGAATCTGGATGAGGAAACAACTCCCATAGCGTTCTAC
AACAGACCTTGGATTGGAGTCGTACCTAGCATGATCATTTGTGCCGGTCT
GATACTTATCTGGATTGTACTTGCCACTCTAGGCCTTGAAAGTGGGGTGG
ACGCGCGATGGGCTTGGAAAGAGTTCTTTTCTGACACATACACTGTTTCA
GACTTCGGTAAAGAAGTGATGAAACAAAAGAATTGA
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protein sequence of Gchil2953.t1

>Gchil2953.t1 ID=Gchil2953.t1|Name=Gchil2953.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=412bp
MNINLGENVVSLITALTTSISLVFLVDIVYRTIVRARKGSVTKRVVLRRY
LVDIYTNPIHLFSNLIGVFKRNPACEDVQGQQIQDFMPSSSVLARTTSKT
GMQLTVFSFGLFTVFVEFLFIFLATKTEQGPVPKTDGFTSKGNIQICHGW
ALAGPLTPLKHGTNEVLVYLGVQNGFRIQVFVEDKNITTNENMKLGLMLE
NGQFYVGQNTQTSVQLKSALERRLSRTNATVLFRSSQSSDNPNPEQRMHP
DSSNIHLPRRRQSILKNSSSIASTMFVVEVSRVNLSETVYTLNSAAVGNE
VTLGIPRMHKYLHGAVQSIMFPTGKNRGISTLRSNRIRNLDEETTPIAFY
NRPWIGVVPSMIICAGLILIWIVLATLGLESGVDARWAWKEFFSDTYTVS
DFGKEVMKQKN*
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mRNA from alignment at tig00000106_pilon:428014..429349-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2953.t1 ID=Gchil2953.t1|Name=Gchil2953.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1336bp|location=Sequence derived from alignment at tig00000106_pilon:428014..429349- (Gracilaria chilensis NLEC103_M9 male)
ATGAATATCAACCTTGGTGAAAATGTTGTATCTCTTATCACTGCCCTTAC
CACGTCTATTTCTCTTGTCTTTTTGGTGGATATCGTGTATCGAACGATTG
TTCGTGCCAGAAAGGGTAGCGTCACTAAACGCGTTGTTTTGAGACGATAC
CTTGTAGATATTTATACCAATCCCATACATCTCTTCTCGAATCTTATTGG
AGTTTTCAAAAGAAATCCTGCTTGTGAAGATGTTCAAGGACAACAAATCC
AAGATTTCATGCCATCTTCCTCCGTTTTGGCTAGAACAACTAGCAAAACA
GGCATGCAACTGACCGTGTTTTCATTTGGACTGTTTACCGTATTCGTTGA
GTTTTTGTTCATCTTCCTGGCCACCAAAACAGAACAAGGTATACGACGTG
CACCTGAAAAATGTTCCCTCGTTTGAAATGGAAGACAGGGGTTGTGAACG
ACTTGAACCTCCTGTGTTGGGTGGCTGTTCAAATGAAGGACCTGTGCCTA
AAACAGATGGCTTCACTTCGAAAGGAAACATACAAATCTGTCATGGATGG
GCTCTTGCGGGGCCTTTGACTCCACTTAAGCATGGAACCAATGAGGTTTT
GGTGTACCTTGGCGTCCAAAACGGATTCAGAATTCAAGTCTTCGTAGAAG
ACAAGAACATTACGACCAACGAAAACATGAAACTAGGGTTGATGCTTGAA
AACGGTCAGTTTTATGTGGGCCAAAACACTCAAACCAGTGTTCAATTGAA
ATCTGCCTTAGAACGACGACTATCAAGAACAAATGCCACTGTTTTATTCC
GTTCTTCACAAAGCTCAGATAATCCAAACCCTGAACAAAGGATGCACCCG
GATTCATCAAACATACATCTTCCGCGTCGCCGACAATCAATCCTCAAAAA
TTCCAGTTCGATTGCATCCACTATGTTTGTGGTTGAAGTGAGCCGGGTAA
ATTTAAGTGAAACCGTTTACACGCTAAATTCTGCTGCAGTGGGGAACGAA
GTAACTCTTGGAATACCAAGAATGCATAAATATCTACATGGTGCAGTGCA
GTCCATCATGTTTCCCACAGGAAAAAATCGCGGGATCAGCACTTTGAGAT
CAAACCGAATTCGGAATCTGGATGAGGAAACAACTCCCATAGCGTTCTAC
AACAGACCTTGGATTGGAGTCGTACCTAGCATGATCATTTGTGCCGGTCT
GATACTTATCTGGATTGTACTTGCCACTCTAGGCCTTGAAAGTGGGGTGG
ACGCGCGATGGGCTTGGAAAGAGTTCTTTTCTGACACATACACTGTTTCA
GACTTCGGTAAAGAAGTGATGAAACAAAAGAATTGA
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Coding sequence (CDS) from alignment at tig00000106_pilon:428014..429349-

>Gchil2953.t1 ID=Gchil2953.t1|Name=Gchil2953.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1236bp|location=Sequence derived from alignment at tig00000106_pilon:428014..429349- (Gracilaria chilensis NLEC103_M9 male)
ATGAATATCAACCTTGGTGAAAATGTTGTATCTCTTATCACTGCCCTTAC
CACGTCTATTTCTCTTGTCTTTTTGGTGGATATCGTGTATCGAACGATTG
TTCGTGCCAGAAAGGGTAGCGTCACTAAACGCGTTGTTTTGAGACGATAC
CTTGTAGATATTTATACCAATCCCATACATCTCTTCTCGAATCTTATTGG
AGTTTTCAAAAGAAATCCTGCTTGTGAAGATGTTCAAGGACAACAAATCC
AAGATTTCATGCCATCTTCCTCCGTTTTGGCTAGAACAACTAGCAAAACA
GGCATGCAACTGACCGTGTTTTCATTTGGACTGTTTACCGTATTCGTTGA
GTTTTTGTTCATCTTCCTGGCCACCAAAACAGAACAAGGACCTGTGCCTA
AAACAGATGGCTTCACTTCGAAAGGAAACATACAAATCTGTCATGGATGG
GCTCTTGCGGGGCCTTTGACTCCACTTAAGCATGGAACCAATGAGGTTTT
GGTGTACCTTGGCGTCCAAAACGGATTCAGAATTCAAGTCTTCGTAGAAG
ACAAGAACATTACGACCAACGAAAACATGAAACTAGGGTTGATGCTTGAA
AACGGTCAGTTTTATGTGGGCCAAAACACTCAAACCAGTGTTCAATTGAA
ATCTGCCTTAGAACGACGACTATCAAGAACAAATGCCACTGTTTTATTCC
GTTCTTCACAAAGCTCAGATAATCCAAACCCTGAACAAAGGATGCACCCG
GATTCATCAAACATACATCTTCCGCGTCGCCGACAATCAATCCTCAAAAA
TTCCAGTTCGATTGCATCCACTATGTTTGTGGTTGAAGTGAGCCGGGTAA
ATTTAAGTGAAACCGTTTACACGCTAAATTCTGCTGCAGTGGGGAACGAA
GTAACTCTTGGAATACCAAGAATGCATAAATATCTACATGGTGCAGTGCA
GTCCATCATGTTTCCCACAGGAAAAAATCGCGGGATCAGCACTTTGAGAT
CAAACCGAATTCGGAATCTGGATGAGGAAACAACTCCCATAGCGTTCTAC
AACAGACCTTGGATTGGAGTCGTACCTAGCATGATCATTTGTGCCGGTCT
GATACTTATCTGGATTGTACTTGCCACTCTAGGCCTTGAAAGTGGGGTGG
ACGCGCGATGGGCTTGGAAAGAGTTCTTTTCTGACACATACACTGTTTCA
GACTTCGGTAAAGAAGTGATGAAACAAAAGAATTGA
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