Gchil2951.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2951.t1
Unique NameGchil2951.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length505
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:420708..422702 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709111.1
Preferred namePMPCA
PFAMsPeptidase_M16,Peptidase_M16_C
Max annot lvl2759|Eukaryota
KEGG koko:K01412
GOsGO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0006508,GO:0006605,GO:0006626,GO:0006627,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006839,GO:0006851,GO:0006886,GO:0006996,GO:0007005,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0008270,GO:0009987,GO:0010467,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016485,GO:0016787,GO:0017087,GO:0019538,GO:0019866,GO:0030001,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032991,GO:0033036,GO:0033365,GO:0034220,GO:0034613,GO:0034982,GO:0042886,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046872,GO:0046907,GO:0046914,GO:0051179,GO:0051234,GO:0051604,GO:0051641,GO:0051649,GO:0055085,GO:0070011,GO:0070013,GO:0070585,GO:0070588,GO:0070727,GO:0070838,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072511,GO:0072594,GO:0072655,GO:0098655,GO:0098660,GO:0098662,GO:0098798,GO:0140096,GO:1901564
Evalue4.93e-128
EggNOG OGsCOG0612@1|root,KOG2067@2759|Eukaryota
EC3.4.24.64
Descriptionprotein processing involved in protein targeting to mitochondrion
COG categoryG
BRITEko00000,ko01000,ko01002,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2951Gchil2951Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 420708..422702 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2951.t1Gchil2951.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 420708..422702 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2951.t1.start1Gchil2951.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 420708..420710 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2951.t1.CDS1Gchil2951.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 420708..420749 +
Gchil2951.t1.CDS2Gchil2951.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 420858..421491 +
Gchil2951.t1.CDS3Gchil2951.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 421864..422702 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2951.t1.exon1Gchil2951.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 420708..420749 +
Gchil2951.t1.exon2Gchil2951.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 420858..421491 +
Gchil2951.t1.exon3Gchil2951.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 421864..422702 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2951.t1.intron1Gchil2951.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000106_pilon 420750..420857 +
Gchil2951.t1.intron2Gchil2951.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000106_pilon 421492..421863 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2951.t1.stop1Gchil2951.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 422700..422702 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2951.t1 ID=Gchil2951.t1|Name=Gchil2951.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=505bp
MMSNMRTIPRLARVRQCRSFAATPETPLMWKLTHGMFDPETSMTEKFPNI
PDPADIEAPSPGTVEISALPNGVRVASQDMGSPVAAIGFFVGAGSRNETP
YSSGVSHLIERLAYKGSTMRTKYRMTRDMERTGALFAASAARETIAFSAE
GMRDKLPEMLSIITETAVAPVTTGCAEGSPDWDIAMEEITAQTTVMKDEL
KSFASEPNGQVTEAIHAAAFHGNTLGLPLVAEERKLPLMNPTTVSDFVSD
NFTPDKMVISAANVDHAALVELSESLLGELSGESVLNASRYTGGSVRISS
DGPGQVAIGFQGVSWQDDDLVPVCVLHTLLGGGGSFSSGGPGKGMYTRLY
SEILNKHGWVSAATAFNHCYSDGGLFGIHGVCEDPAHLNNLIEVVGLQVG
KLASPLVSGELERAKMMTKSSLIMNLESRAVVCEDLGRQILCSGRYAGPK
ELIKKIDAVTEDDIRRVASRMIQSQPAVVTYGEEYATYEYAAIESSLKRQ
TQLA*
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spliced messenger RNA

>Gchil2951.t1 ID=Gchil2951.t1|Name=Gchil2951.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1515bp|location=Sequence derived from alignment at tig00000106_pilon:420708..422702+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGTCCAACATGCGCACTATTCCGCGCCTTGCTCGCGTACGCCAATG
TCGAAGCTTCGCCGCCACCCCGGAGACTCCACTAATGTGGAAACTAACGC
ACGGAATGTTCGATCCGGAGACGTCAATGACTGAGAAATTTCCAAACATC
CCCGATCCCGCTGACATTGAAGCTCCGAGTCCGGGAACCGTAGAGATTTC
CGCTCTTCCCAATGGCGTTCGAGTTGCGTCACAAGACATGGGATCTCCAG
TGGCTGCGATTGGCTTCTTTGTTGGCGCGGGTTCGCGAAATGAAACGCCG
TATTCGTCTGGAGTTTCGCATCTCATCGAACGCCTTGCATATAAAGGTTC
TACGATGCGAACCAAGTATCGTATGACGAGAGACATGGAACGTACTGGCG
CCTTGTTTGCTGCGTCTGCTGCGAGAGAAACGATTGCGTTTTCTGCGGAG
GGCATGAGAGACAAGCTCCCGGAAATGTTGAGCATCATCACTGAGACTGC
GGTTGCGCCTGTCACTACCGGATGTGCCGAGGGGTCCCCGGATTGGGATA
TTGCCATGGAAGAAATCACTGCACAAACCACCGTAATGAAAGATGAGCTC
AAGAGTTTTGCATCTGAGCCAAATGGTCAAGTTACTGAAGCCATTCACGC
CGCTGCATTCCATGGAAACACTCTAGGACTTCCGCTGGTCGCAGAAGAGC
GCAAATTGCCTCTCATGAACCCGACCACAGTAAGCGATTTCGTTTCCGAT
AACTTCACGCCGGATAAAATGGTAATATCGGCGGCAAATGTGGATCATGC
GGCGCTTGTAGAGTTATCTGAATCGCTCTTGGGAGAACTCAGTGGGGAAA
GCGTTCTTAATGCAAGTCGATACACCGGGGGGTCCGTTCGGATCTCGTCG
GACGGTCCTGGACAAGTGGCTATCGGCTTCCAGGGCGTTTCATGGCAAGA
TGACGACCTTGTGCCGGTATGTGTTTTGCACACTCTTCTCGGAGGTGGTG
GGTCTTTCAGTTCCGGTGGACCTGGAAAGGGAATGTACACTCGTTTGTAC
TCTGAAATTTTGAACAAACATGGTTGGGTGAGTGCGGCAACTGCATTCAA
CCACTGCTATTCCGATGGTGGTCTCTTTGGGATTCATGGTGTTTGTGAAG
ATCCTGCTCATCTTAACAATCTTATTGAGGTCGTTGGTTTGCAAGTAGGA
AAGCTTGCGTCTCCGCTTGTAAGTGGTGAACTCGAGCGCGCGAAGATGAT
GACGAAGAGTAGCTTGATTATGAACCTTGAGAGTCGTGCTGTCGTGTGCG
AAGATCTTGGCCGACAAATTCTTTGCTCTGGAAGGTACGCTGGACCGAAG
GAATTGATAAAGAAGATCGATGCAGTGACTGAAGATGATATTCGAAGGGT
CGCCTCGAGGATGATTCAGAGTCAGCCAGCGGTTGTGACGTATGGGGAAG
AGTATGCGACCTACGAATATGCGGCTATCGAGTCATCTCTTAAACGTCAG
ACACAGTTGGCGTAG
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protein sequence of Gchil2951.t1

>Gchil2951.t1 ID=Gchil2951.t1|Name=Gchil2951.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=505bp
MMSNMRTIPRLARVRQCRSFAATPETPLMWKLTHGMFDPETSMTEKFPNI
PDPADIEAPSPGTVEISALPNGVRVASQDMGSPVAAIGFFVGAGSRNETP
YSSGVSHLIERLAYKGSTMRTKYRMTRDMERTGALFAASAARETIAFSAE
GMRDKLPEMLSIITETAVAPVTTGCAEGSPDWDIAMEEITAQTTVMKDEL
KSFASEPNGQVTEAIHAAAFHGNTLGLPLVAEERKLPLMNPTTVSDFVSD
NFTPDKMVISAANVDHAALVELSESLLGELSGESVLNASRYTGGSVRISS
DGPGQVAIGFQGVSWQDDDLVPVCVLHTLLGGGGSFSSGGPGKGMYTRLY
SEILNKHGWVSAATAFNHCYSDGGLFGIHGVCEDPAHLNNLIEVVGLQVG
KLASPLVSGELERAKMMTKSSLIMNLESRAVVCEDLGRQILCSGRYAGPK
ELIKKIDAVTEDDIRRVASRMIQSQPAVVTYGEEYATYEYAAIESSLKRQ
TQLA*
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mRNA from alignment at tig00000106_pilon:420708..422702+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2951.t1 ID=Gchil2951.t1|Name=Gchil2951.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1995bp|location=Sequence derived from alignment at tig00000106_pilon:420708..422702+ (Gracilaria chilensis NLEC103_M9 male)
ATGATGTCCAACATGCGCACTATTCCGCGCCTTGCTCGCGTAGTAAGTTT
CGCCAAGCCATCCCAATCGAATTCGCCTCATCAATCCTCTCCCAATTCTC
TGCCAGAAAGCTAACCGTTCCCAACATCCACGTCGAATATCAATTCACAG
CGCCAATGTCGAAGCTTCGCCGCCACCCCGGAGACTCCACTAATGTGGAA
ACTAACGCACGGAATGTTCGATCCGGAGACGTCAATGACTGAGAAATTTC
CAAACATCCCCGATCCCGCTGACATTGAAGCTCCGAGTCCGGGAACCGTA
GAGATTTCCGCTCTTCCCAATGGCGTTCGAGTTGCGTCACAAGACATGGG
ATCTCCAGTGGCTGCGATTGGCTTCTTTGTTGGCGCGGGTTCGCGAAATG
AAACGCCGTATTCGTCTGGAGTTTCGCATCTCATCGAACGCCTTGCATAT
AAAGGTTCTACGATGCGAACCAAGTATCGTATGACGAGAGACATGGAACG
TACTGGCGCCTTGTTTGCTGCGTCTGCTGCGAGAGAAACGATTGCGTTTT
CTGCGGAGGGCATGAGAGACAAGCTCCCGGAAATGTTGAGCATCATCACT
GAGACTGCGGTTGCGCCTGTCACTACCGGATGTGCCGAGGGGTCCCCGGA
TTGGGATATTGCCATGGAAGAAATCACTGCACAAACCACCGTAATGAAAG
ATGAGCTCAAGAGTTTTGCATCTGAGCCAAATGGTCAAGTTACTGAAGCC
ATTCACGCCGCTGCATTCCATGGAAACACTCTAGGTAAGTTGCACTCCTT
CAAACGCCAATCGCGATCGAAACGTCACATGTATATTGAGGTGTGAGAGT
ATTCAACCGTCGCCGAATTTTCCAATATGGAAAATCCTACGCGTGGTCTG
AGCTAGTGACACCTCGCAGACTATAGGTGTCGCAGTTATCGGTATTCGGC
AACTGCGACCAACGGAAGTGCGCTACAAATATGTCCCAGTCCGCGTTAGT
TCATTTTATGAGCTTCTAGCGTTGGGACCTCAAAGCGAGCTTCTACATTT
CCAAGATACGCATCCATAACTGCCACACTGAAGGGGACAATATTTTTGAG
ACCAATGCTGACTTACTATCTTTCATCTCATTTGTTTGATGTTCTGAAAT
CTGCAGGACTTCCGCTGGTCGCAGAAGAGCGCAAATTGCCTCTCATGAAC
CCGACCACAGTAAGCGATTTCGTTTCCGATAACTTCACGCCGGATAAAAT
GGTAATATCGGCGGCAAATGTGGATCATGCGGCGCTTGTAGAGTTATCTG
AATCGCTCTTGGGAGAACTCAGTGGGGAAAGCGTTCTTAATGCAAGTCGA
TACACCGGGGGGTCCGTTCGGATCTCGTCGGACGGTCCTGGACAAGTGGC
TATCGGCTTCCAGGGCGTTTCATGGCAAGATGACGACCTTGTGCCGGTAT
GTGTTTTGCACACTCTTCTCGGAGGTGGTGGGTCTTTCAGTTCCGGTGGA
CCTGGAAAGGGAATGTACACTCGTTTGTACTCTGAAATTTTGAACAAACA
TGGTTGGGTGAGTGCGGCAACTGCATTCAACCACTGCTATTCCGATGGTG
GTCTCTTTGGGATTCATGGTGTTTGTGAAGATCCTGCTCATCTTAACAAT
CTTATTGAGGTCGTTGGTTTGCAAGTAGGAAAGCTTGCGTCTCCGCTTGT
AAGTGGTGAACTCGAGCGCGCGAAGATGATGACGAAGAGTAGCTTGATTA
TGAACCTTGAGAGTCGTGCTGTCGTGTGCGAAGATCTTGGCCGACAAATT
CTTTGCTCTGGAAGGTACGCTGGACCGAAGGAATTGATAAAGAAGATCGA
TGCAGTGACTGAAGATGATATTCGAAGGGTCGCCTCGAGGATGATTCAGA
GTCAGCCAGCGGTTGTGACGTATGGGGAAGAGTATGCGACCTACGAATAT
GCGGCTATCGAGTCATCTCTTAAACGTCAGACACAGTTGGCGTAG
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Coding sequence (CDS) from alignment at tig00000106_pilon:420708..422702+

>Gchil2951.t1 ID=Gchil2951.t1|Name=Gchil2951.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1515bp|location=Sequence derived from alignment at tig00000106_pilon:420708..422702+ (Gracilaria chilensis NLEC103_M9 male)
ATGATGTCCAACATGCGCACTATTCCGCGCCTTGCTCGCGTACGCCAATG
TCGAAGCTTCGCCGCCACCCCGGAGACTCCACTAATGTGGAAACTAACGC
ACGGAATGTTCGATCCGGAGACGTCAATGACTGAGAAATTTCCAAACATC
CCCGATCCCGCTGACATTGAAGCTCCGAGTCCGGGAACCGTAGAGATTTC
CGCTCTTCCCAATGGCGTTCGAGTTGCGTCACAAGACATGGGATCTCCAG
TGGCTGCGATTGGCTTCTTTGTTGGCGCGGGTTCGCGAAATGAAACGCCG
TATTCGTCTGGAGTTTCGCATCTCATCGAACGCCTTGCATATAAAGGTTC
TACGATGCGAACCAAGTATCGTATGACGAGAGACATGGAACGTACTGGCG
CCTTGTTTGCTGCGTCTGCTGCGAGAGAAACGATTGCGTTTTCTGCGGAG
GGCATGAGAGACAAGCTCCCGGAAATGTTGAGCATCATCACTGAGACTGC
GGTTGCGCCTGTCACTACCGGATGTGCCGAGGGGTCCCCGGATTGGGATA
TTGCCATGGAAGAAATCACTGCACAAACCACCGTAATGAAAGATGAGCTC
AAGAGTTTTGCATCTGAGCCAAATGGTCAAGTTACTGAAGCCATTCACGC
CGCTGCATTCCATGGAAACACTCTAGGACTTCCGCTGGTCGCAGAAGAGC
GCAAATTGCCTCTCATGAACCCGACCACAGTAAGCGATTTCGTTTCCGAT
AACTTCACGCCGGATAAAATGGTAATATCGGCGGCAAATGTGGATCATGC
GGCGCTTGTAGAGTTATCTGAATCGCTCTTGGGAGAACTCAGTGGGGAAA
GCGTTCTTAATGCAAGTCGATACACCGGGGGGTCCGTTCGGATCTCGTCG
GACGGTCCTGGACAAGTGGCTATCGGCTTCCAGGGCGTTTCATGGCAAGA
TGACGACCTTGTGCCGGTATGTGTTTTGCACACTCTTCTCGGAGGTGGTG
GGTCTTTCAGTTCCGGTGGACCTGGAAAGGGAATGTACACTCGTTTGTAC
TCTGAAATTTTGAACAAACATGGTTGGGTGAGTGCGGCAACTGCATTCAA
CCACTGCTATTCCGATGGTGGTCTCTTTGGGATTCATGGTGTTTGTGAAG
ATCCTGCTCATCTTAACAATCTTATTGAGGTCGTTGGTTTGCAAGTAGGA
AAGCTTGCGTCTCCGCTTGTAAGTGGTGAACTCGAGCGCGCGAAGATGAT
GACGAAGAGTAGCTTGATTATGAACCTTGAGAGTCGTGCTGTCGTGTGCG
AAGATCTTGGCCGACAAATTCTTTGCTCTGGAAGGTACGCTGGACCGAAG
GAATTGATAAAGAAGATCGATGCAGTGACTGAAGATGATATTCGAAGGGT
CGCCTCGAGGATGATTCAGAGTCAGCCAGCGGTTGTGACGTATGGGGAAG
AGTATGCGACCTACGAATATGCGGCTATCGAGTCATCTCTTAAACGTCAG
ACACAGTTGGCGTAG
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