Gchil2947.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2947.t1
Unique NameGchil2947.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length508
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:407596..409328 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702951.1
PFAMsAcatn
Max annot lvl2759|Eukaryota
KEGG koko:K03372
KEGG TC2.A.1.25
KEGG Pathwayko00604,ko01100,map00604,map01100
GOsGO:0000295,GO:0003674,GO:0005215,GO:0005346,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006862,GO:0008150,GO:0008324,GO:0008509,GO:0008514,GO:0008521,GO:0015075,GO:0015077,GO:0015078,GO:0015215,GO:0015216,GO:0015291,GO:0015293,GO:0015294,GO:0015295,GO:0015318,GO:0015605,GO:0015672,GO:0015711,GO:0015748,GO:0015865,GO:0015868,GO:0015876,GO:0015916,GO:0015931,GO:0015932,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0022890,GO:0031224,GO:0031226,GO:0034220,GO:0035348,GO:0042886,GO:0042887,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051181,GO:0051182,GO:0051184,GO:0051185,GO:0051234,GO:0051503,GO:0055085,GO:0071077,GO:0071106,GO:0071702,GO:0071705,GO:0071944,GO:0072348,GO:0072530,GO:0098655,GO:0098656,GO:0098660,GO:0098662,GO:1901264,GO:1901337,GO:1901505,GO:1901679,GO:1901682,GO:1902600
Evalue1.69e-80
EggNOG OGsCOG0477@1|root,KOG3574@2759|Eukaryota
Descriptionacetyl-CoA transmembrane transporter activity
COG categoryEGP
BRITEko00000,ko00001,ko01000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2947Gchil2947Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 407596..409328 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2947.t1Gchil2947.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 407596..409328 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2947.t1.start1Gchil2947.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 407596..407598 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2947.t1.CDS1Gchil2947.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 407596..408149 +
Gchil2947.t1.CDS2Gchil2947.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 408246..408589 +
Gchil2947.t1.CDS3Gchil2947.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 408703..409328 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2947.t1.exon1Gchil2947.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 407596..408149 +
Gchil2947.t1.exon2Gchil2947.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 408246..408589 +
Gchil2947.t1.exon3Gchil2947.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 408703..409328 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2947.t1.intron1Gchil2947.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000106_pilon 408150..408245 +
Gchil2947.t1.intron2Gchil2947.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000106_pilon 408590..408702 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2947.t1.stop1Gchil2947.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 409326..409328 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2947.t1 ID=Gchil2947.t1|Name=Gchil2947.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=508bp
MVKRRTASASLTSSVTSIAPPDTQIPVCVSSRPPQSQSPQPSSTTWYDDR
HSIVLLVLLYAAQGLPIGLAFGTIPFLLKERGSSYADLAEFSLASMPYSL
KLIIAPFVDAFYSPSFGRRKSWIVPVQMAIGCTMLFFSSPIHHWVSHGNV
AALAPTFFFLIALVATQDIAVDGWSLTMLKKENVAYVRPLLLSSRSTGAL
IDLQHALRFVGVFYLLLTAFVAFGKNENAPSVKKSDDGSDAESSDEESSS
SSRSLLALTALDNIRSTYRDVLVVVRLPAVQALVAALLVSKLGFSAYDNV
LSLKLLELGFSKESMASMAVIQAPFTIIGTVMTGRLVANKSPTAVYVVGY
FCRLVLSLSGPALVGWLSSHGGVVTPAYYSAMLAITIMYSVAAECLMFIG
MGAFFLNISSSSVHVAGSYLTLLNTSSNMGGLWHKAVVLWLVDKLTVREQ
CEVAADAAEGSACAILRDGYYTISVALMPVAALVGLYLMKTLAQLKRLPE
SAWRASR*
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spliced messenger RNA

>Gchil2947.t1 ID=Gchil2947.t1|Name=Gchil2947.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1524bp|location=Sequence derived from alignment at tig00000106_pilon:407596..409328+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCAAACGGAGGACCGCCTCCGCCTCCCTCACTTCGTCCGTCACCTC
CATTGCGCCGCCGGACACCCAAATTCCGGTCTGCGTCTCGTCGCGCCCCC
CCCAATCCCAGTCGCCGCAGCCCTCTTCAACCACTTGGTACGATGACCGC
CACTCCATCGTGCTGCTTGTGCTGCTCTACGCCGCACAGGGCCTCCCAAT
TGGCCTCGCCTTCGGCACCATTCCATTTCTGCTCAAGGAGCGCGGCTCGT
CGTACGCCGACCTGGCCGAGTTCTCTCTGGCCAGCATGCCCTATTCGCTC
AAGCTCATCATAGCGCCGTTTGTGGACGCCTTCTACTCGCCTTCCTTCGG
CCGGCGCAAATCATGGATCGTGCCTGTGCAGATGGCAATTGGCTGCACCA
TGCTCTTCTTCTCGTCCCCCATCCACCACTGGGTATCCCACGGCAACGTC
GCGGCGCTTGCGCCCACCTTTTTCTTTCTCATTGCGCTCGTGGCCACGCA
GGACATTGCCGTGGACGGCTGGTCGCTCACCATGCTGAAGAAGGAGAACG
TCGCGTACGTGCGCCCGCTGCTGCTGTCCAGTCGCTCCACTGGCGCTCTC
ATTGATTTGCAGCACGCGCTCCGTTTTGTGGGTGTGTTCTACTTGCTGCT
CACTGCGTTCGTCGCGTTTGGAAAGAACGAAAACGCGCCGTCTGTGAAAA
AGTCGGACGACGGCAGCGACGCCGAGTCGAGTGATGAGGAGTCGTCGTCC
AGTTCTCGCTCGCTGTTGGCGCTTACTGCGCTGGACAACATTCGAAGCAC
GTACAGGGATGTGCTTGTGGTGGTGCGCCTGCCGGCTGTGCAGGCGTTGG
TCGCGGCTCTGCTCGTGTCCAAGCTTGGCTTTTCCGCATACGACAACGTG
TTGTCGCTCAAACTGCTCGAACTGGGATTTTCCAAGGAGAGCATGGCCTC
CATGGCTGTGATACAGGCGCCGTTTACAATCATCGGCACCGTGATGACCG
GACGGCTGGTGGCCAACAAGTCGCCCACCGCTGTTTATGTGGTTGGGTAT
TTCTGCCGGTTGGTGCTGAGCTTGAGCGGTCCAGCGTTGGTGGGATGGCT
GTCCAGCCACGGTGGGGTGGTGACTCCGGCTTACTATTCTGCGATGCTTG
CGATCACCATCATGTACAGCGTGGCGGCAGAGTGCCTGATGTTCATCGGC
ATGGGCGCCTTTTTCCTCAACATCTCGAGTTCTTCTGTTCACGTGGCCGG
GTCGTACCTGACGTTGCTCAACACGAGCTCCAACATGGGCGGGCTGTGGC
ACAAGGCGGTGGTGCTGTGGCTGGTTGACAAGCTGACGGTTCGCGAGCAA
TGCGAGGTTGCAGCGGACGCTGCGGAGGGCAGTGCGTGTGCGATTTTGCG
CGATGGGTACTACACGATCTCCGTGGCTCTGATGCCTGTTGCAGCGTTGG
TTGGGTTGTACTTGATGAAGACGCTGGCGCAGCTGAAGAGGTTGCCCGAG
TCGGCGTGGCGAGCGTCTCGATGA
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protein sequence of Gchil2947.t1

>Gchil2947.t1 ID=Gchil2947.t1|Name=Gchil2947.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=508bp
MVKRRTASASLTSSVTSIAPPDTQIPVCVSSRPPQSQSPQPSSTTWYDDR
HSIVLLVLLYAAQGLPIGLAFGTIPFLLKERGSSYADLAEFSLASMPYSL
KLIIAPFVDAFYSPSFGRRKSWIVPVQMAIGCTMLFFSSPIHHWVSHGNV
AALAPTFFFLIALVATQDIAVDGWSLTMLKKENVAYVRPLLLSSRSTGAL
IDLQHALRFVGVFYLLLTAFVAFGKNENAPSVKKSDDGSDAESSDEESSS
SSRSLLALTALDNIRSTYRDVLVVVRLPAVQALVAALLVSKLGFSAYDNV
LSLKLLELGFSKESMASMAVIQAPFTIIGTVMTGRLVANKSPTAVYVVGY
FCRLVLSLSGPALVGWLSSHGGVVTPAYYSAMLAITIMYSVAAECLMFIG
MGAFFLNISSSSVHVAGSYLTLLNTSSNMGGLWHKAVVLWLVDKLTVREQ
CEVAADAAEGSACAILRDGYYTISVALMPVAALVGLYLMKTLAQLKRLPE
SAWRASR*
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mRNA from alignment at tig00000106_pilon:407596..409328+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2947.t1 ID=Gchil2947.t1|Name=Gchil2947.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1733bp|location=Sequence derived from alignment at tig00000106_pilon:407596..409328+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTCAAACGGAGGACCGCCTCCGCCTCCCTCACTTCGTCCGTCACCTC
CATTGCGCCGCCGGACACCCAAATTCCGGTCTGCGTCTCGTCGCGCCCCC
CCCAATCCCAGTCGCCGCAGCCCTCTTCAACCACTTGGTACGATGACCGC
CACTCCATCGTGCTGCTTGTGCTGCTCTACGCCGCACAGGGCCTCCCAAT
TGGCCTCGCCTTCGGCACCATTCCATTTCTGCTCAAGGAGCGCGGCTCGT
CGTACGCCGACCTGGCCGAGTTCTCTCTGGCCAGCATGCCCTATTCGCTC
AAGCTCATCATAGCGCCGTTTGTGGACGCCTTCTACTCGCCTTCCTTCGG
CCGGCGCAAATCATGGATCGTGCCTGTGCAGATGGCAATTGGCTGCACCA
TGCTCTTCTTCTCGTCCCCCATCCACCACTGGGTATCCCACGGCAACGTC
GCGGCGCTTGCGCCCACCTTTTTCTTTCTCATTGCGCTCGTGGCCACGCA
GGACATTGCCGTGGACGGCTGGTCGCTCACCATGCTGAAGAAGGAGAACG
TCGCGTACGCCAGCACGTGCCAGTCGCTGGGGCTGTCCATCGGCTATTTT
GCCACCTTCACCATCTTTCTGGCGTTCAACAACCACACTTTTTGCGACAG
GTACGTGCGCCCGCTGCTGCTGTCCAGTCGCTCCACTGGCGCTCTCATTG
ATTTGCAGCACGCGCTCCGTTTTGTGGGTGTGTTCTACTTGCTGCTCACT
GCGTTCGTCGCGTTTGGAAAGAACGAAAACGCGCCGTCTGTGAAAAAGTC
GGACGACGGCAGCGACGCCGAGTCGAGTGATGAGGAGTCGTCGTCCAGTT
CTCGCTCGCTGTTGGCGCTTACTGCGCTGGACAACATTCGAAGCACGTAC
AGGGATGTGCTTGTGGTGGTGCGCCTGCCGGCTGTGCAGGCGTTGGTCGC
GGCTCTGCTCGTGTCCAAGCTTGGCTTTTCCGCATACGACAACGGTAAGT
GCTTGCCGCAACAAGAGCGTTTAATGTGCGGACTGTTGAGCTGACATGTT
TGtgttggttgttgttgttgttgttgttgttgttgAATGAACCGTATTAC
ATGCAAGTGTTGTCGCTCAAACTGCTCGAACTGGGATTTTCCAAGGAGAG
CATGGCCTCCATGGCTGTGATACAGGCGCCGTTTACAATCATCGGCACCG
TGATGACCGGACGGCTGGTGGCCAACAAGTCGCCCACCGCTGTTTATGTG
GTTGGGTATTTCTGCCGGTTGGTGCTGAGCTTGAGCGGTCCAGCGTTGGT
GGGATGGCTGTCCAGCCACGGTGGGGTGGTGACTCCGGCTTACTATTCTG
CGATGCTTGCGATCACCATCATGTACAGCGTGGCGGCAGAGTGCCTGATG
TTCATCGGCATGGGCGCCTTTTTCCTCAACATCTCGAGTTCTTCTGTTCA
CGTGGCCGGGTCGTACCTGACGTTGCTCAACACGAGCTCCAACATGGGCG
GGCTGTGGCACAAGGCGGTGGTGCTGTGGCTGGTTGACAAGCTGACGGTT
CGCGAGCAATGCGAGGTTGCAGCGGACGCTGCGGAGGGCAGTGCGTGTGC
GATTTTGCGCGATGGGTACTACACGATCTCCGTGGCTCTGATGCCTGTTG
CAGCGTTGGTTGGGTTGTACTTGATGAAGACGCTGGCGCAGCTGAAGAGG
TTGCCCGAGTCGGCGTGGCGAGCGTCTCGATGA
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Coding sequence (CDS) from alignment at tig00000106_pilon:407596..409328+

>Gchil2947.t1 ID=Gchil2947.t1|Name=Gchil2947.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1524bp|location=Sequence derived from alignment at tig00000106_pilon:407596..409328+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTCAAACGGAGGACCGCCTCCGCCTCCCTCACTTCGTCCGTCACCTC
CATTGCGCCGCCGGACACCCAAATTCCGGTCTGCGTCTCGTCGCGCCCCC
CCCAATCCCAGTCGCCGCAGCCCTCTTCAACCACTTGGTACGATGACCGC
CACTCCATCGTGCTGCTTGTGCTGCTCTACGCCGCACAGGGCCTCCCAAT
TGGCCTCGCCTTCGGCACCATTCCATTTCTGCTCAAGGAGCGCGGCTCGT
CGTACGCCGACCTGGCCGAGTTCTCTCTGGCCAGCATGCCCTATTCGCTC
AAGCTCATCATAGCGCCGTTTGTGGACGCCTTCTACTCGCCTTCCTTCGG
CCGGCGCAAATCATGGATCGTGCCTGTGCAGATGGCAATTGGCTGCACCA
TGCTCTTCTTCTCGTCCCCCATCCACCACTGGGTATCCCACGGCAACGTC
GCGGCGCTTGCGCCCACCTTTTTCTTTCTCATTGCGCTCGTGGCCACGCA
GGACATTGCCGTGGACGGCTGGTCGCTCACCATGCTGAAGAAGGAGAACG
TCGCGTACGTGCGCCCGCTGCTGCTGTCCAGTCGCTCCACTGGCGCTCTC
ATTGATTTGCAGCACGCGCTCCGTTTTGTGGGTGTGTTCTACTTGCTGCT
CACTGCGTTCGTCGCGTTTGGAAAGAACGAAAACGCGCCGTCTGTGAAAA
AGTCGGACGACGGCAGCGACGCCGAGTCGAGTGATGAGGAGTCGTCGTCC
AGTTCTCGCTCGCTGTTGGCGCTTACTGCGCTGGACAACATTCGAAGCAC
GTACAGGGATGTGCTTGTGGTGGTGCGCCTGCCGGCTGTGCAGGCGTTGG
TCGCGGCTCTGCTCGTGTCCAAGCTTGGCTTTTCCGCATACGACAACGTG
TTGTCGCTCAAACTGCTCGAACTGGGATTTTCCAAGGAGAGCATGGCCTC
CATGGCTGTGATACAGGCGCCGTTTACAATCATCGGCACCGTGATGACCG
GACGGCTGGTGGCCAACAAGTCGCCCACCGCTGTTTATGTGGTTGGGTAT
TTCTGCCGGTTGGTGCTGAGCTTGAGCGGTCCAGCGTTGGTGGGATGGCT
GTCCAGCCACGGTGGGGTGGTGACTCCGGCTTACTATTCTGCGATGCTTG
CGATCACCATCATGTACAGCGTGGCGGCAGAGTGCCTGATGTTCATCGGC
ATGGGCGCCTTTTTCCTCAACATCTCGAGTTCTTCTGTTCACGTGGCCGG
GTCGTACCTGACGTTGCTCAACACGAGCTCCAACATGGGCGGGCTGTGGC
ACAAGGCGGTGGTGCTGTGGCTGGTTGACAAGCTGACGGTTCGCGAGCAA
TGCGAGGTTGCAGCGGACGCTGCGGAGGGCAGTGCGTGTGCGATTTTGCG
CGATGGGTACTACACGATCTCCGTGGCTCTGATGCCTGTTGCAGCGTTGG
TTGGGTTGTACTTGATGAAGACGCTGGCGCAGCTGAAGAGGTTGCCCGAG
TCGGCGTGGCGAGCGTCTCGATGA
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