Gchil2943.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2943.t1
Unique NameGchil2943.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length269
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:400163..400969 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMO357CT
Preferred nameDGK1
PFAMsCTP_transf_1
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00017
KEGG koko:K16368
KEGG ReactionR09944
KEGG Pathwayko00564,ko01100,ko01110,map00564,map01100,map01110
GOsGO:0003674,GO:0003824,GO:0004143,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006629,GO:0006644,GO:0006650,GO:0006654,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019637,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046473,GO:0046474,GO:0046486,GO:0071704,GO:0090407,GO:0098827,GO:1901576
Evalue5.77e-25
EggNOG OGsCOG0170@1|root,KOG4453@2759|Eukaryota
EC2.7.1.174
Descriptionphytol kinase activity
COG categoryI
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2943Gchil2943Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 400163..400969 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2943.t1.start1Gchil2943.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 400163..400165 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2943.t1.CDS1Gchil2943.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 400163..400969 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2943.t1.exon1Gchil2943.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 400163..400969 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2943.t1.stop1Gchil2943.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 400967..400969 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2943.t1Gchil2943.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 400163..400969 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2943.t1 ID=Gchil2943.t1|Name=Gchil2943.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=269bp
MTRPLVAATATATTATTTRPDPRSRQLPTRNALHLTRKIFHVLSGLAYAL
FTRNVAPSTRAPLLFSLVFVVLVVELSRIRAPHAALNRAVLSCFRPFMRR
HEARLFSGMLYYTLGVALVASYSRVTAACVAILSLAVADPVAALVGVAFE
PALPEARLRNGKSVAGFIFGAFAAIFTAFTVLTCAVRSTMDLREALLVAV
PVGISAAITELLIPSPQLTLPFRHVPLGLDDNLFIPLVAAFVCQYLLDSR
LHDVHLSPLLLCKPFTKF*
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spliced messenger RNA

>Gchil2943.t1 ID=Gchil2943.t1|Name=Gchil2943.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=807bp|location=Sequence derived from alignment at tig00000106_pilon:400163..400969+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCGTCCGCTTGTCGccgccaccgccaccgccaccaccgccaccac
cacccgccccgATCCGCGCTCGCGCCAACTGCCCACACGAAACGCCCTGC
ATCTCACTCGCAAGATCTTCCACGTGCTCAGCGGCTTAGCGTACGCGCTC
TTCACGCGCAACGTCGCCCCGTCCACCCGCGCCCCGCTGCTCTTCTCGCT
CGTGTTCGTCGTGCTCGTCGTGGAGCTCTCACGCATCCGCGCCCCGCACG
CCGCGCTCAATCGTGCCGTGCTTTCATGCTTCCGCCCGTTCATGCGTCGC
CATGAGGCACGTCTCTTCTCCGGTATGCTGTACTACACGCTGGGCGTCGC
TCTCGTCGCCTCCTACTCTCGTGTCACTGCCGCCTGTGTGGCCATTCTTT
CCCTTGCCGTCGCCGATCCGGTCGCTGCTCTGGTTGGCGTTGCCTTCGAG
CCTGCGCTGCCGGAGGCGCGCTTGCGCAACGGCAAGTCTGTGGCTGGCTT
TATCTTTGGCGCCTTTGCAGCCATTTTCACCGCCTTCACCGTTCTCACGT
GCGCTGTGCGCTCTACGATGGATCTCAGGGAGGCGCTGCTTGTTGCTGTT
CCGGTTGGCATCAGTGCCGCCATTACGGAGCTGCTTATTCCGTCGCCGCA
GCTGACGCTGCCGTTTCGCCACGTGCCGCTGGGCTTGGATGATAACTTGT
TCATTCCACTTGTGGCGGCGTTTGTTTGCCAATACCTGCTTGACAGCCGA
CTGCATGACGTTCATCTGTCGCCTTTGCTGCTGTGCAAGCCGTTCACCAA
GTTTTAA
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protein sequence of Gchil2943.t1

>Gchil2943.t1 ID=Gchil2943.t1|Name=Gchil2943.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=269bp
MTRPLVAATATATTATTTRPDPRSRQLPTRNALHLTRKIFHVLSGLAYAL
FTRNVAPSTRAPLLFSLVFVVLVVELSRIRAPHAALNRAVLSCFRPFMRR
HEARLFSGMLYYTLGVALVASYSRVTAACVAILSLAVADPVAALVGVAFE
PALPEARLRNGKSVAGFIFGAFAAIFTAFTVLTCAVRSTMDLREALLVAV
PVGISAAITELLIPSPQLTLPFRHVPLGLDDNLFIPLVAAFVCQYLLDSR
LHDVHLSPLLLCKPFTKF*
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mRNA from alignment at tig00000106_pilon:400163..400969+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2943.t1 ID=Gchil2943.t1|Name=Gchil2943.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=807bp|location=Sequence derived from alignment at tig00000106_pilon:400163..400969+ (Gracilaria chilensis NLEC103_M9 male)
ATGACGCGTCCGCTTGTCGccgccaccgccaccgccaccaccgccaccac
cacccgccccgATCCGCGCTCGCGCCAACTGCCCACACGAAACGCCCTGC
ATCTCACTCGCAAGATCTTCCACGTGCTCAGCGGCTTAGCGTACGCGCTC
TTCACGCGCAACGTCGCCCCGTCCACCCGCGCCCCGCTGCTCTTCTCGCT
CGTGTTCGTCGTGCTCGTCGTGGAGCTCTCACGCATCCGCGCCCCGCACG
CCGCGCTCAATCGTGCCGTGCTTTCATGCTTCCGCCCGTTCATGCGTCGC
CATGAGGCACGTCTCTTCTCCGGTATGCTGTACTACACGCTGGGCGTCGC
TCTCGTCGCCTCCTACTCTCGTGTCACTGCCGCCTGTGTGGCCATTCTTT
CCCTTGCCGTCGCCGATCCGGTCGCTGCTCTGGTTGGCGTTGCCTTCGAG
CCTGCGCTGCCGGAGGCGCGCTTGCGCAACGGCAAGTCTGTGGCTGGCTT
TATCTTTGGCGCCTTTGCAGCCATTTTCACCGCCTTCACCGTTCTCACGT
GCGCTGTGCGCTCTACGATGGATCTCAGGGAGGCGCTGCTTGTTGCTGTT
CCGGTTGGCATCAGTGCCGCCATTACGGAGCTGCTTATTCCGTCGCCGCA
GCTGACGCTGCCGTTTCGCCACGTGCCGCTGGGCTTGGATGATAACTTGT
TCATTCCACTTGTGGCGGCGTTTGTTTGCCAATACCTGCTTGACAGCCGA
CTGCATGACGTTCATCTGTCGCCTTTGCTGCTGTGCAAGCCGTTCACCAA
GTTTTAA
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Coding sequence (CDS) from alignment at tig00000106_pilon:400163..400969+

>Gchil2943.t1 ID=Gchil2943.t1|Name=Gchil2943.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=807bp|location=Sequence derived from alignment at tig00000106_pilon:400163..400969+ (Gracilaria chilensis NLEC103_M9 male)
ATGACGCGTCCGCTTGTCGccgccaccgccaccgccaccaccgccaccac
cacccgccccgATCCGCGCTCGCGCCAACTGCCCACACGAAACGCCCTGC
ATCTCACTCGCAAGATCTTCCACGTGCTCAGCGGCTTAGCGTACGCGCTC
TTCACGCGCAACGTCGCCCCGTCCACCCGCGCCCCGCTGCTCTTCTCGCT
CGTGTTCGTCGTGCTCGTCGTGGAGCTCTCACGCATCCGCGCCCCGCACG
CCGCGCTCAATCGTGCCGTGCTTTCATGCTTCCGCCCGTTCATGCGTCGC
CATGAGGCACGTCTCTTCTCCGGTATGCTGTACTACACGCTGGGCGTCGC
TCTCGTCGCCTCCTACTCTCGTGTCACTGCCGCCTGTGTGGCCATTCTTT
CCCTTGCCGTCGCCGATCCGGTCGCTGCTCTGGTTGGCGTTGCCTTCGAG
CCTGCGCTGCCGGAGGCGCGCTTGCGCAACGGCAAGTCTGTGGCTGGCTT
TATCTTTGGCGCCTTTGCAGCCATTTTCACCGCCTTCACCGTTCTCACGT
GCGCTGTGCGCTCTACGATGGATCTCAGGGAGGCGCTGCTTGTTGCTGTT
CCGGTTGGCATCAGTGCCGCCATTACGGAGCTGCTTATTCCGTCGCCGCA
GCTGACGCTGCCGTTTCGCCACGTGCCGCTGGGCTTGGATGATAACTTGT
TCATTCCACTTGTGGCGGCGTTTGTTTGCCAATACCTGCTTGACAGCCGA
CTGCATGACGTTCATCTGTCGCCTTTGCTGCTGTGCAAGCCGTTCACCAA
GTTTTAA
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