Gchil2938.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2938.t1
Unique NameGchil2938.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length414
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:336791..338111 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX54524
PFAMsDAO
Max annot lvl2759|Eukaryota
Evalue3.08e-25
EggNOG OGsCOG0665@1|root,2QQBA@2759|Eukaryota
DescriptionFAD dependent oxidoreductase
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2938Gchil2938Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 336791..338111 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2938.t1Gchil2938.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 336791..338111 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2938.t1.stop1Gchil2938.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 336791..336793 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2938.t1.CDS1Gchil2938.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 336791..336910 -
Gchil2938.t1.CDS2Gchil2938.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 336990..338111 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2938.t1.exon1Gchil2938.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 336791..336910 -
Gchil2938.t1.exon2Gchil2938.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 336990..338111 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2938.t1.intron1Gchil2938.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000106_pilon 336911..336989 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2938.t1.start1Gchil2938.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 338109..338111 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2938.t1 ID=Gchil2938.t1|Name=Gchil2938.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=414bp
MAYEHIRMAFHRSIFSLPTFAVSQPLTLQTRQGATLTLHHFAPKTKSRRA
PRSNVAPPDVPHPRRVAIVGGGLAGLATAYHLLHSTARYARKRNFAHTDL
HLTVFDPNMPGKGGASAVAAGLLHPFAPRVKRKVWQSVKAIDAALHLVKE
AQSCSQNPLVSFPGLLRLAVREQQRVDFRIAANRFPKEVQFLEPHEVASR
FPHVNHQVPAVLLSNAAVVNTTEYLQALWSLCKKSGRIEWRNEGVHDVGH
LLGESESSFDTVVVCAGATIPGIQGMEHVPIQLCRGQNLILQPCEGAYAQ
ELPVISGKYIVPDLFGRKKSSHLVAGATFEHQRDEEDPEGFMQELCKQDT
QRAVSELQKPLEAISPSMFENCTVERIQEPRVGSSRAWDPGVYYIMHILD
ECSPMQLLQGTSS*
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spliced messenger RNA

>Gchil2938.t1 ID=Gchil2938.t1|Name=Gchil2938.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1242bp|location=Sequence derived from alignment at tig00000106_pilon:336791..338111- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTATGAACACATTCGAATGGCGTTTCATCGATCAATATTTTCTTT
ACCAACCTTCGCCGTATCGCAACCACTCACATTACAAACACGCCAAGGAG
CCACTCTGACGCTACATCACTTCGCCCCAAAAACAAAGAGTCGACGAGCA
CCGCGCTCAAATGTTGCCCCTCCCGATGTTCCTCATCCACGCCGCGTGGC
CATTGTCGGTGGCGGTCTAGCCGGTTTGGCCACTGCTTACCACCTTCTCC
ATTCAACCGCTCGCTATGCACGAAAGAGAAATTTCGCGCACACAGATTTG
CATCTCACAGTATTTGACCCCAACATGCCTGGTAAGGGAGGAGCCAGTGC
AGTTGCTGCAGGCTTGTTGCATCCATTTGCTCCAAGGGTTAAGAGAAAGG
TGTGGCAGTCAGTGAAAGCTATTGACGCAGCTCTACATCTCGTCAAGGAG
GCTCAGTCTTGTTCTCAAAACCCGCTCGTTTCGTTCCCGGGTCTACTTCG
ACTTGCTGTTCGAGAGCAGCAGCGAGTCGACTTTCGAATTGCGGCAAACC
GCTTTCCGAAGGAGGTACAGTTTTTAGAGCCTCATGAGGTTGCCAGCCGT
TTTCCACACGTTAACCACCAAGTTCCAGCTGTGCTATTGAGTAACGCTGC
TGTGGTGAATACAACTGAATACCTTCAAGCGTTATGGAGTCTGTGCAAAA
AGTCAGGGCGAATCGAGTGGCGCAATGAGGGTGTGCATGACGTGGGACAC
CTCTTGGGTGAAAGCGAATCCTCATTTGACACCGTTGTCGTTTGCGCAGG
TGCTACAATCCCAGGTATACAAGGAATGGAACATGTTCCTATTCAGTTGT
GTCGCGGTCAGAATTTGATTTTGCAACCATGTGAAGGGGCATACGCACAA
GAGCTACCTGTCATTAGTGGCAAATACATTGTTCCGGACTTGTTTGGTCG
GAAGAAATCATCACATCTCGTTGCAGGCGCAACTTTCGAGCATCAACGAG
ATGAAGAGGACCCTGAAGGCTTTATGCAGGAGCTTTGCAAACAAGATACC
CAGCGGGCTGTTTCGGAGTTGCAAAAACCTTTGGAAGCAATAAGCCCAAG
CATGTTTGAAAACTGCACTGTAGAACGGATACAAGAACCTCGTGTTGGCT
CTTCACGGGCTTGGGATCCCGGGGTTTACTACATCATGCATATCTTGGAC
GAATGCTCGCCCATGCAATTGTTGCAGGGAACGAGCTCTTAA
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protein sequence of Gchil2938.t1

>Gchil2938.t1 ID=Gchil2938.t1|Name=Gchil2938.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=414bp
MAYEHIRMAFHRSIFSLPTFAVSQPLTLQTRQGATLTLHHFAPKTKSRRA
PRSNVAPPDVPHPRRVAIVGGGLAGLATAYHLLHSTARYARKRNFAHTDL
HLTVFDPNMPGKGGASAVAAGLLHPFAPRVKRKVWQSVKAIDAALHLVKE
AQSCSQNPLVSFPGLLRLAVREQQRVDFRIAANRFPKEVQFLEPHEVASR
FPHVNHQVPAVLLSNAAVVNTTEYLQALWSLCKKSGRIEWRNEGVHDVGH
LLGESESSFDTVVVCAGATIPGIQGMEHVPIQLCRGQNLILQPCEGAYAQ
ELPVISGKYIVPDLFGRKKSSHLVAGATFEHQRDEEDPEGFMQELCKQDT
QRAVSELQKPLEAISPSMFENCTVERIQEPRVGSSRAWDPGVYYIMHILD
ECSPMQLLQGTSS*
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mRNA from alignment at tig00000106_pilon:336791..338111-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2938.t1 ID=Gchil2938.t1|Name=Gchil2938.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1321bp|location=Sequence derived from alignment at tig00000106_pilon:336791..338111- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCTATGAACACATTCGAATGGCGTTTCATCGATCAATATTTTCTTT
ACCAACCTTCGCCGTATCGCAACCACTCACATTACAAACACGCCAAGGAG
CCACTCTGACGCTACATCACTTCGCCCCAAAAACAAAGAGTCGACGAGCA
CCGCGCTCAAATGTTGCCCCTCCCGATGTTCCTCATCCACGCCGCGTGGC
CATTGTCGGTGGCGGTCTAGCCGGTTTGGCCACTGCTTACCACCTTCTCC
ATTCAACCGCTCGCTATGCACGAAAGAGAAATTTCGCGCACACAGATTTG
CATCTCACAGTATTTGACCCCAACATGCCTGGTAAGGGAGGAGCCAGTGC
AGTTGCTGCAGGCTTGTTGCATCCATTTGCTCCAAGGGTTAAGAGAAAGG
TGTGGCAGTCAGTGAAAGCTATTGACGCAGCTCTACATCTCGTCAAGGAG
GCTCAGTCTTGTTCTCAAAACCCGCTCGTTTCGTTCCCGGGTCTACTTCG
ACTTGCTGTTCGAGAGCAGCAGCGAGTCGACTTTCGAATTGCGGCAAACC
GCTTTCCGAAGGAGGTACAGTTTTTAGAGCCTCATGAGGTTGCCAGCCGT
TTTCCACACGTTAACCACCAAGTTCCAGCTGTGCTATTGAGTAACGCTGC
TGTGGTGAATACAACTGAATACCTTCAAGCGTTATGGAGTCTGTGCAAAA
AGTCAGGGCGAATCGAGTGGCGCAATGAGGGTGTGCATGACGTGGGACAC
CTCTTGGGTGAAAGCGAATCCTCATTTGACACCGTTGTCGTTTGCGCAGG
TGCTACAATCCCAGGTATACAAGGAATGGAACATGTTCCTATTCAGTTGT
GTCGCGGTCAGAATTTGATTTTGCAACCATGTGAAGGGGCATACGCACAA
GAGCTACCTGTCATTAGTGGCAAATACATTGTTCCGGACTTGTTTGGTCG
GAAGAAATCATCACATCTCGTTGCAGGCGCAACTTTCGAGCATCAACGAG
ATGAAGAGGACCCTGAAGGCTTTATGCAGGAGCTTTGCAAACAAGATACC
CAGCGGGCTGTTTCGGAGTTGCAAAAACCTTTGGAAGCAATAAGCCCAAG
CATGTTTGAAAACTGCACTGTAGTAGGTACAACATCTGGCACGCGAGCTT
TGCCTCCTCGTTCAGCAATTGGGTCTATCCCCATTGTCTGTAAATTATCA
GGAACGGATACAAGAACCTCGTGTTGGCTCTTCACGGGCTTGGGATCCCG
GGGTTTACTACATCATGCATATCTTGGACGAATGCTCGCCCATGCAATTG
TTGCAGGGAACGAGCTCTTAA
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Coding sequence (CDS) from alignment at tig00000106_pilon:336791..338111-

>Gchil2938.t1 ID=Gchil2938.t1|Name=Gchil2938.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1242bp|location=Sequence derived from alignment at tig00000106_pilon:336791..338111- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCTATGAACACATTCGAATGGCGTTTCATCGATCAATATTTTCTTT
ACCAACCTTCGCCGTATCGCAACCACTCACATTACAAACACGCCAAGGAG
CCACTCTGACGCTACATCACTTCGCCCCAAAAACAAAGAGTCGACGAGCA
CCGCGCTCAAATGTTGCCCCTCCCGATGTTCCTCATCCACGCCGCGTGGC
CATTGTCGGTGGCGGTCTAGCCGGTTTGGCCACTGCTTACCACCTTCTCC
ATTCAACCGCTCGCTATGCACGAAAGAGAAATTTCGCGCACACAGATTTG
CATCTCACAGTATTTGACCCCAACATGCCTGGTAAGGGAGGAGCCAGTGC
AGTTGCTGCAGGCTTGTTGCATCCATTTGCTCCAAGGGTTAAGAGAAAGG
TGTGGCAGTCAGTGAAAGCTATTGACGCAGCTCTACATCTCGTCAAGGAG
GCTCAGTCTTGTTCTCAAAACCCGCTCGTTTCGTTCCCGGGTCTACTTCG
ACTTGCTGTTCGAGAGCAGCAGCGAGTCGACTTTCGAATTGCGGCAAACC
GCTTTCCGAAGGAGGTACAGTTTTTAGAGCCTCATGAGGTTGCCAGCCGT
TTTCCACACGTTAACCACCAAGTTCCAGCTGTGCTATTGAGTAACGCTGC
TGTGGTGAATACAACTGAATACCTTCAAGCGTTATGGAGTCTGTGCAAAA
AGTCAGGGCGAATCGAGTGGCGCAATGAGGGTGTGCATGACGTGGGACAC
CTCTTGGGTGAAAGCGAATCCTCATTTGACACCGTTGTCGTTTGCGCAGG
TGCTACAATCCCAGGTATACAAGGAATGGAACATGTTCCTATTCAGTTGT
GTCGCGGTCAGAATTTGATTTTGCAACCATGTGAAGGGGCATACGCACAA
GAGCTACCTGTCATTAGTGGCAAATACATTGTTCCGGACTTGTTTGGTCG
GAAGAAATCATCACATCTCGTTGCAGGCGCAACTTTCGAGCATCAACGAG
ATGAAGAGGACCCTGAAGGCTTTATGCAGGAGCTTTGCAAACAAGATACC
CAGCGGGCTGTTTCGGAGTTGCAAAAACCTTTGGAAGCAATAAGCCCAAG
CATGTTTGAAAACTGCACTGTAGAACGGATACAAGAACCTCGTGTTGGCT
CTTCACGGGCTTGGGATCCCGGGGTTTACTACATCATGCATATCTTGGAC
GAATGCTCGCCCATGCAATTGTTGCAGGGAACGAGCTCTTAA
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