Gchil2937.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2937.t1
Unique Name	Gchil2937.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	538

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000106_pilon	contig	tig00000106_pilon:334998..336611 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	78898.MVEG_04553T0
Max annot lvl	4751\|Fungi
Evalue	2.43e-17
EggNOG OGs	2E3H1@1\|root,2SAJC@2759\|Eukaryota,3ARBF@33154\|Opisthokonta,3PFVF@4751\|Fungi
Description	Allomyces macrogynus ATCC 38327
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2937	Gchil2937	Gracilaria chilensis NLEC103_M9 male	gene	tig00000106_pilon 334998..336611 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2937.t1.start1	Gchil2937.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000106_pilon 334998..335000 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2937.t1.CDS1	Gchil2937.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000106_pilon 334998..336611 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2937.t1.exon1	Gchil2937.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000106_pilon 334998..336611 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2937.t1.stop1	Gchil2937.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000106_pilon 336609..336611 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2937.t1	Gchil2937.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000106_pilon 334998..336611 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000106_pilon:334998..336611+
coding sequence from alignment at tig00000106_pilon:334998..336611+

mRNA sequence

>Gchil2937.t1 ID=Gchil2937.t1|Name=Gchil2937.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=538bp
MSTIDGCRIGGTGGFIGNCPGPCPNYNIGADADPSNPTVIFQRGGYHRVV
WTRNNHEGGFVRWTMVPLNKKDSKLWHSKMAFHYNCWSAGRFSCNDFDFH
RDCNYDRQNEAYAKMLYIPPVFPDGDYVLGWTWYGGGVGFGHFGDYYDCA
YVRVSGGEPVQESYVPEFVSGGGSSYDDGCEATVDDLGICWREPCLPMRK
TEKRVPAPFKDGKSPEPILAEWYGDGKSANPASVGLSRILLVDAKQDRVL
EVDLKEIIRLNSNDEISLLAETTGDVEYVEWYTNGKVNGKDYSAPYTVAG
DFKEDIYPWMHPLFNRRMRVSVKIVGKDGTFSWGNVELRFKEKGAGASTF
PGQSIHDYLGSHNAHEEGDGDGSEENTEWIQEPISDADITGTHDTDSTVI
EESETSQVGSHTENPQDHNQGSESSSEVALQPPADTMTESGTSEAHDSSG
STGAPPQPVAVEDPESNGSFGGSSSSTNSGSSVSAGGSSLFPNSIFGRGG
SGSGAGSKRGRATERTAAFLVVDEREDAMRKAYGRFA*

spliced messenger RNA

>Gchil2937.t1 ID=Gchil2937.t1|Name=Gchil2937.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1614bp|location=Sequence derived from alignment at tig00000106_pilon:334998..336611+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAACCATAGATGGATGCCGTATAGGTGGTACCGGAGGATTCATCGG
CAACTGTCCAGGTCCATGCCCAAACTACAACATTGGAGCAGATGCAGACC
CGTCAAACCCAACGGTTATATTCCAACGTGGTGGATACCACAGAGTAGTG
TGGACGAGAAATAATCATGAAGGTGGTTTTGTTCGATGGACTATGGTACC
GCTAAACAAGAAAGATTCCAAACTCTGGCACTCAAAGATGGCATTTCACT
ATAACTGCTGGAGTGCTGGCCGATTTAGCTGCAATGACTTCGATTTCCAT
CGCGACTGCAACTACGACAGACAGAACGAAGCGTATGCGAAAATGCTGTA
CATTCCACCTGTCTTTCCGGATGGAGACTATGTGCTTGGGTGGACCTGGT
ATGGTGGGGGAGTCGGCTTCGGCCACTTCGGGGATTACTACGACTGCGCT
TATGTTAGGGTAAGCGGCGGAGAACCGGTTCAAGAATCGTACGTTCCAGA
ATTTGTCAGCGGAGGCGGAAGCTCCTATGACGATGGCTGTGAAGCAACAG
TCGATGATCTGGGGATCTGCTGGAGAGAACCGTGCCTTCCAATGCGCAAA
ACAGAAAAGAGAGTTCCTGCGCCTTTCAAGGACGGCAAGAGCCCGGAACC
AATTCTTGCAGAGTGGTACGGAGATGGAAAAAGCGCAAATCCTGCGTCAG
TCGGTCTCTCCCGTATCTTGCTGGTAGATGCTAAGCAAGACAGGGTTCTT
GAGGTTGACCTTAAAGAAATTATTCGTCTCAACAGTAATGACGAAATTTC
TCTCTTGGCAGAGACAACTGGTGATGTTGAATACGTTGAATGGTACACTA
ATGGCAAAGTGAATGGAAAAGACTACTCCGCCCCGTACACAGTGGCAGGG
GATTTCAAAGAGGACATATATCCTTGGATGCACCCATTGTTCAATCGACG
GATGCGAGTGTCCGTTAAGATTGTCGGAAAGGATGGAACTTTCTCATGGG
GTAACGTTGAGTTGAGGTTCAAAGAAAAAGGTGCGGGAGCATCGACTTTT
CCAGGTCAATCTATTCATGACTACTTGGGATCCCATAATGCGCACGAGGA
AGGAGATGGTGATGGTTCGGAAGAAAATACAGAATGGATTCAGGAACCTA
TCTCGGATGCGGACATTACTGGAACTCATGACACCGATTCGACCGTAATC
GAAGAAAGTGAAACATCTCAAGTAGGCTCGCACACTGAGAACCCCCAAGA
TCACAACCAGGGCAGTGAGTCTTCATCGGAGGTTGCCCTCCAGCCACCAG
CAGATACCATGACGGAGTCTGGTACTTCTGAAGCACATGATTCATCAGGT
AGTACTGGTGCTCCGCCGCAACCTGTCGCCGTGGAAGATCCAGAGTCTAA
TGGATCTTTCGGTGGTTCGTCATCATCAACAAACTCTGGCTCATCTGTAT
CTGCAGGTGGTTCTTCATTGTTTCCAAACAGCATTTTCGGGAGAGGAGGT
AGTGGCAGTGGTGCGGGATCGAAGCGAGGCCGGGCCACAGAAAGAACTGC
TGCTTTCCTCGTTGTTGACGAGCGCGAAGATGCGATGAGAAAAGCCTACG
GACGGTTCGCTTAG

protein sequence of Gchil2937.t1

>Gchil2937.t1 ID=Gchil2937.t1|Name=Gchil2937.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=538bp
MSTIDGCRIGGTGGFIGNCPGPCPNYNIGADADPSNPTVIFQRGGYHRVV
WTRNNHEGGFVRWTMVPLNKKDSKLWHSKMAFHYNCWSAGRFSCNDFDFH
RDCNYDRQNEAYAKMLYIPPVFPDGDYVLGWTWYGGGVGFGHFGDYYDCA
YVRVSGGEPVQESYVPEFVSGGGSSYDDGCEATVDDLGICWREPCLPMRK
TEKRVPAPFKDGKSPEPILAEWYGDGKSANPASVGLSRILLVDAKQDRVL
EVDLKEIIRLNSNDEISLLAETTGDVEYVEWYTNGKVNGKDYSAPYTVAG
DFKEDIYPWMHPLFNRRMRVSVKIVGKDGTFSWGNVELRFKEKGAGASTF
PGQSIHDYLGSHNAHEEGDGDGSEENTEWIQEPISDADITGTHDTDSTVI
EESETSQVGSHTENPQDHNQGSESSSEVALQPPADTMTESGTSEAHDSSG
STGAPPQPVAVEDPESNGSFGGSSSSTNSGSSVSAGGSSLFPNSIFGRGG
SGSGAGSKRGRATERTAAFLVVDEREDAMRKAYGRFA*

mRNA from alignment at tig00000106_pilon:334998..336611+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2937.t1 ID=Gchil2937.t1|Name=Gchil2937.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1614bp|location=Sequence derived from alignment at tig00000106_pilon:334998..336611+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCAACCATAGATGGATGCCGTATAGGTGGTACCGGAGGATTCATCGG
CAACTGTCCAGGTCCATGCCCAAACTACAACATTGGAGCAGATGCAGACC
CGTCAAACCCAACGGTTATATTCCAACGTGGTGGATACCACAGAGTAGTG
TGGACGAGAAATAATCATGAAGGTGGTTTTGTTCGATGGACTATGGTACC
GCTAAACAAGAAAGATTCCAAACTCTGGCACTCAAAGATGGCATTTCACT
ATAACTGCTGGAGTGCTGGCCGATTTAGCTGCAATGACTTCGATTTCCAT
CGCGACTGCAACTACGACAGACAGAACGAAGCGTATGCGAAAATGCTGTA
CATTCCACCTGTCTTTCCGGATGGAGACTATGTGCTTGGGTGGACCTGGT
ATGGTGGGGGAGTCGGCTTCGGCCACTTCGGGGATTACTACGACTGCGCT
TATGTTAGGGTAAGCGGCGGAGAACCGGTTCAAGAATCGTACGTTCCAGA
ATTTGTCAGCGGAGGCGGAAGCTCCTATGACGATGGCTGTGAAGCAACAG
TCGATGATCTGGGGATCTGCTGGAGAGAACCGTGCCTTCCAATGCGCAAA
ACAGAAAAGAGAGTTCCTGCGCCTTTCAAGGACGGCAAGAGCCCGGAACC
AATTCTTGCAGAGTGGTACGGAGATGGAAAAAGCGCAAATCCTGCGTCAG
TCGGTCTCTCCCGTATCTTGCTGGTAGATGCTAAGCAAGACAGGGTTCTT
GAGGTTGACCTTAAAGAAATTATTCGTCTCAACAGTAATGACGAAATTTC
TCTCTTGGCAGAGACAACTGGTGATGTTGAATACGTTGAATGGTACACTA
ATGGCAAAGTGAATGGAAAAGACTACTCCGCCCCGTACACAGTGGCAGGG
GATTTCAAAGAGGACATATATCCTTGGATGCACCCATTGTTCAATCGACG
GATGCGAGTGTCCGTTAAGATTGTCGGAAAGGATGGAACTTTCTCATGGG
GTAACGTTGAGTTGAGGTTCAAAGAAAAAGGTGCGGGAGCATCGACTTTT
CCAGGTCAATCTATTCATGACTACTTGGGATCCCATAATGCGCACGAGGA
AGGAGATGGTGATGGTTCGGAAGAAAATACAGAATGGATTCAGGAACCTA
TCTCGGATGCGGACATTACTGGAACTCATGACACCGATTCGACCGTAATC
GAAGAAAGTGAAACATCTCAAGTAGGCTCGCACACTGAGAACCCCCAAGA
TCACAACCAGGGCAGTGAGTCTTCATCGGAGGTTGCCCTCCAGCCACCAG
CAGATACCATGACGGAGTCTGGTACTTCTGAAGCACATGATTCATCAGGT
AGTACTGGTGCTCCGCCGCAACCTGTCGCCGTGGAAGATCCAGAGTCTAA
TGGATCTTTCGGTGGTTCGTCATCATCAACAAACTCTGGCTCATCTGTAT
CTGCAGGTGGTTCTTCATTGTTTCCAAACAGCATTTTCGGGAGAGGAGGT
AGTGGCAGTGGTGCGGGATCGAAGCGAGGCCGGGCCACAGAAAGAACTGC
TGCTTTCCTCGTTGTTGACGAGCGCGAAGATGCGATGAGAAAAGCCTACG
GACGGTTCGCTTAG

Coding sequence (CDS) from alignment at tig00000106_pilon:334998..336611+

>Gchil2937.t1 ID=Gchil2937.t1|Name=Gchil2937.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1614bp|location=Sequence derived from alignment at tig00000106_pilon:334998..336611+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCAACCATAGATGGATGCCGTATAGGTGGTACCGGAGGATTCATCGG
CAACTGTCCAGGTCCATGCCCAAACTACAACATTGGAGCAGATGCAGACC
CGTCAAACCCAACGGTTATATTCCAACGTGGTGGATACCACAGAGTAGTG
TGGACGAGAAATAATCATGAAGGTGGTTTTGTTCGATGGACTATGGTACC
GCTAAACAAGAAAGATTCCAAACTCTGGCACTCAAAGATGGCATTTCACT
ATAACTGCTGGAGTGCTGGCCGATTTAGCTGCAATGACTTCGATTTCCAT
CGCGACTGCAACTACGACAGACAGAACGAAGCGTATGCGAAAATGCTGTA
CATTCCACCTGTCTTTCCGGATGGAGACTATGTGCTTGGGTGGACCTGGT
ATGGTGGGGGAGTCGGCTTCGGCCACTTCGGGGATTACTACGACTGCGCT
TATGTTAGGGTAAGCGGCGGAGAACCGGTTCAAGAATCGTACGTTCCAGA
ATTTGTCAGCGGAGGCGGAAGCTCCTATGACGATGGCTGTGAAGCAACAG
TCGATGATCTGGGGATCTGCTGGAGAGAACCGTGCCTTCCAATGCGCAAA
ACAGAAAAGAGAGTTCCTGCGCCTTTCAAGGACGGCAAGAGCCCGGAACC
AATTCTTGCAGAGTGGTACGGAGATGGAAAAAGCGCAAATCCTGCGTCAG
TCGGTCTCTCCCGTATCTTGCTGGTAGATGCTAAGCAAGACAGGGTTCTT
GAGGTTGACCTTAAAGAAATTATTCGTCTCAACAGTAATGACGAAATTTC
TCTCTTGGCAGAGACAACTGGTGATGTTGAATACGTTGAATGGTACACTA
ATGGCAAAGTGAATGGAAAAGACTACTCCGCCCCGTACACAGTGGCAGGG
GATTTCAAAGAGGACATATATCCTTGGATGCACCCATTGTTCAATCGACG
GATGCGAGTGTCCGTTAAGATTGTCGGAAAGGATGGAACTTTCTCATGGG
GTAACGTTGAGTTGAGGTTCAAAGAAAAAGGTGCGGGAGCATCGACTTTT
CCAGGTCAATCTATTCATGACTACTTGGGATCCCATAATGCGCACGAGGA
AGGAGATGGTGATGGTTCGGAAGAAAATACAGAATGGATTCAGGAACCTA
TCTCGGATGCGGACATTACTGGAACTCATGACACCGATTCGACCGTAATC
GAAGAAAGTGAAACATCTCAAGTAGGCTCGCACACTGAGAACCCCCAAGA
TCACAACCAGGGCAGTGAGTCTTCATCGGAGGTTGCCCTCCAGCCACCAG
CAGATACCATGACGGAGTCTGGTACTTCTGAAGCACATGATTCATCAGGT
AGTACTGGTGCTCCGCCGCAACCTGTCGCCGTGGAAGATCCAGAGTCTAA
TGGATCTTTCGGTGGTTCGTCATCATCAACAAACTCTGGCTCATCTGTAT
CTGCAGGTGGTTCTTCATTGTTTCCAAACAGCATTTTCGGGAGAGGAGGT
AGTGGCAGTGGTGCGGGATCGAAGCGAGGCCGGGCCACAGAAAGAACTGC
TGCTTTCCTCGTTGTTGACGAGCGCGAAGATGCGATGAGAAAAGCCTACG
GACGGTTCGCTTAG