Gchil2936.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2936.t1
Unique Name	Gchil2936.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	359

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000106_pilon	contig	tig00000106_pilon:332586..333662 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	946362.XP_004993106.1
Preferred name	PYCRL
PFAMs	F420_oxidored,P5CR_dimer
Max annot lvl	33154\|Opisthokonta
KEGG rclass	RC00054,RC00083
KEGG ko	ko:K00286
KEGG Reaction	R01248,R01251,R03291,R03293
KEGG Pathway	ko00330,ko01100,ko01110,ko01130,ko01230,map00330,map01100,map01110,map01130,map01230
KEGG Module	M00015
GOs	GO:0003674,GO:0003824,GO:0004126,GO:0004735,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006082,GO:0006139,GO:0006213,GO:0006216,GO:0006520,GO:0006560,GO:0006561,GO:0006725,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008652,GO:0009056,GO:0009058,GO:0009064,GO:0009084,GO:0009116,GO:0009119,GO:0009164,GO:0009972,GO:0009987,GO:0010941,GO:0016053,GO:0016491,GO:0016645,GO:0016646,GO:0016787,GO:0016810,GO:0016814,GO:0017144,GO:0018130,GO:0019239,GO:0019439,GO:0019752,GO:0031974,GO:0033554,GO:0034599,GO:0034641,GO:0034655,GO:0034656,GO:0042221,GO:0042391,GO:0042454,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046087,GO:0046131,GO:0046133,GO:0046135,GO:0046394,GO:0046483,GO:0046700,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0051881,GO:0055086,GO:0055114,GO:0055129,GO:0060548,GO:0065007,GO:0065008,GO:0070013,GO:0070887,GO:0071704,GO:0072527,GO:0072529,GO:0080134,GO:0080135,GO:1900407,GO:1900408,GO:1901031,GO:1901032,GO:1901135,GO:1901136,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901607,GO:1901657,GO:1901658,GO:1902882,GO:1902883,GO:1903201,GO:1903202,GO:1903205,GO:1903206,GO:2001023,GO:2001024,GO:2001038,GO:2001039
Evalue	1.66e-43
EggNOG OGs	COG0345@1\|root,KOG3124@2759\|Eukaryota,39QSG@33154\|Opisthokonta
EC	1.5.1.2
Description	pyrroline-5-carboxylate reductase activity
COG category	E
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2936	Gchil2936	Gracilaria chilensis NLEC103_M9 male	gene	tig00000106_pilon 332586..333662 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2936.t1.start1	Gchil2936.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000106_pilon 332586..332588 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2936.t1.CDS1	Gchil2936.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000106_pilon 332586..333662 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2936.t1.exon1	Gchil2936.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000106_pilon 332586..333662 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2936.t1.stop1	Gchil2936.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000106_pilon 333660..333662 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2936.t1	Gchil2936.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000106_pilon 332586..333662 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000106_pilon:332586..333662+
coding sequence from alignment at tig00000106_pilon:332586..333662+

mRNA sequence

>Gchil2936.t1 ID=Gchil2936.t1|Name=Gchil2936.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=359bp
MGANSPEPSHPALRAPPLIRVAPEMAFSAFVQRIPALPNFATTLIPAISR
RTTPLLSLPSNQYLRHSHYGNAVSNLTTKASADAPHVAVIGAGGNMATAL
INGLVSQQSTPVIYASAPSLELLSHLPEAAKRYQTTSNTDACLQANVVLL
CVKPNVVPLVLSEIAPTLLHSKNDPVLVSIAAGINTTTLQKHLSTPDHSA
ENIPIVRAMPNLPASTQSACTVICSNNAAQKYHISLAERILTAVGTVYGA
PESLMASASGLSGAGVAYVFMMAEALADAGVKQGFSREHAMAMAADTIKG
AGDLLQQKKHPAVLRNMVESPGGVTVVGTSQLEEKGFRAAIGAAVEGAVN
RARQMGDN*

spliced messenger RNA

>Gchil2936.t1 ID=Gchil2936.t1|Name=Gchil2936.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1077bp|location=Sequence derived from alignment at tig00000106_pilon:332586..333662+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGCAAATTCTCCCGAACCGTCGCATCCGGCGTTGCGGGCTCCACC
GCTCATCCGCGTCGCCCCAGAAATGGCGTTCAGTGCTTTTGTACAGAGAA
TACCTGCATTACCCAACTTCGCCACAACTCTCATCCCCGCCATCTCTCGA
CGAACAACTCCTCTTCTTTCCTTGCCGTCAAACCAATATCTTCGGCACTC
TCACTACGGAAATGCCGTCTCCAATTTAACTACCAAAGCCTCTGCAGATG
CTCCGCACGTTGCGGTCATCGGAGCCGGTGGCAATATGGCTACCGCTCTT
ATCAATGGTTTGGTATCTCAACAATCCACTCCCGTAATATACGCCTCTGC
TCCTTCTCTTGAGCTCCTCTCGCATCTTCCAGAGGCTGCTAAGCGATATC
AAACCACTTCAAATACCGACGCTTGCCTGCAAGCAAATGTTGTTCTGTTG
TGCGTCAAGCCGAATGTTGTTCCACTTGTTCTTTCGGAAATCGCTCCTAC
ACTTCTTCACTCGAAAAACGATCCCGTCCTTGTTTCTATTGCCGCCGGTA
TAAACACCACAACCCTACAAAAGCATTTGTCAACACCCGATCATTCAGCT
GAAAATATACCGATTGTGAGGGCCATGCCTAACTTACCTGCTTCAACACA
ATCTGCGTGCACTGTGATCTGCTCAAACAATGCGGCACAAAAATATCATA
TAAGTCTCGCCGAGCGAATCCTAACTGCGGTGGGCACGGTATATGGCGCA
CCTGAAAGTCTCATGGCATCTGCTTCTGGCCTCTCTGGTGCAGGTGTCGC
CTATGTGTTTATGATGGCTGAAGCTTTGGCTGACGCTGGCGTTAAACAAG
GGTTTTCAAGGGAACATGCCATGGCCATGGCTGCTGACACGATTAAGGGT
GCCGGAGATTTGCTGCAACAAAAGAAACACCCTGCTGTTTTGAGAAATAT
GGTGGAGAGTCCGGGAGGGGTTACTGTTGTTGGTACTTCTCAGTTGGAGG
AAAAGGGTTTTCGAGCAGCGATTGGGGCTGCTGTTGAGGGAGCAGTAAAC
AGAGCTCGTCAAATGGGCGACAACTGA

protein sequence of Gchil2936.t1

>Gchil2936.t1 ID=Gchil2936.t1|Name=Gchil2936.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=359bp
MGANSPEPSHPALRAPPLIRVAPEMAFSAFVQRIPALPNFATTLIPAISR
RTTPLLSLPSNQYLRHSHYGNAVSNLTTKASADAPHVAVIGAGGNMATAL
INGLVSQQSTPVIYASAPSLELLSHLPEAAKRYQTTSNTDACLQANVVLL
CVKPNVVPLVLSEIAPTLLHSKNDPVLVSIAAGINTTTLQKHLSTPDHSA
ENIPIVRAMPNLPASTQSACTVICSNNAAQKYHISLAERILTAVGTVYGA
PESLMASASGLSGAGVAYVFMMAEALADAGVKQGFSREHAMAMAADTIKG
AGDLLQQKKHPAVLRNMVESPGGVTVVGTSQLEEKGFRAAIGAAVEGAVN
RARQMGDN*

mRNA from alignment at tig00000106_pilon:332586..333662+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2936.t1 ID=Gchil2936.t1|Name=Gchil2936.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1077bp|location=Sequence derived from alignment at tig00000106_pilon:332586..333662+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGCGCAAATTCTCCCGAACCGTCGCATCCGGCGTTGCGGGCTCCACC
GCTCATCCGCGTCGCCCCAGAAATGGCGTTCAGTGCTTTTGTACAGAGAA
TACCTGCATTACCCAACTTCGCCACAACTCTCATCCCCGCCATCTCTCGA
CGAACAACTCCTCTTCTTTCCTTGCCGTCAAACCAATATCTTCGGCACTC
TCACTACGGAAATGCCGTCTCCAATTTAACTACCAAAGCCTCTGCAGATG
CTCCGCACGTTGCGGTCATCGGAGCCGGTGGCAATATGGCTACCGCTCTT
ATCAATGGTTTGGTATCTCAACAATCCACTCCCGTAATATACGCCTCTGC
TCCTTCTCTTGAGCTCCTCTCGCATCTTCCAGAGGCTGCTAAGCGATATC
AAACCACTTCAAATACCGACGCTTGCCTGCAAGCAAATGTTGTTCTGTTG
TGCGTCAAGCCGAATGTTGTTCCACTTGTTCTTTCGGAAATCGCTCCTAC
ACTTCTTCACTCGAAAAACGATCCCGTCCTTGTTTCTATTGCCGCCGGTA
TAAACACCACAACCCTACAAAAGCATTTGTCAACACCCGATCATTCAGCT
GAAAATATACCGATTGTGAGGGCCATGCCTAACTTACCTGCTTCAACACA
ATCTGCGTGCACTGTGATCTGCTCAAACAATGCGGCACAAAAATATCATA
TAAGTCTCGCCGAGCGAATCCTAACTGCGGTGGGCACGGTATATGGCGCA
CCTGAAAGTCTCATGGCATCTGCTTCTGGCCTCTCTGGTGCAGGTGTCGC
CTATGTGTTTATGATGGCTGAAGCTTTGGCTGACGCTGGCGTTAAACAAG
GGTTTTCAAGGGAACATGCCATGGCCATGGCTGCTGACACGATTAAGGGT
GCCGGAGATTTGCTGCAACAAAAGAAACACCCTGCTGTTTTGAGAAATAT
GGTGGAGAGTCCGGGAGGGGTTACTGTTGTTGGTACTTCTCAGTTGGAGG
AAAAGGGTTTTCGAGCAGCGATTGGGGCTGCTGTTGAGGGAGCAGTAAAC
AGAGCTCGTCAAATGGGCGACAACTGA

Coding sequence (CDS) from alignment at tig00000106_pilon:332586..333662+

>Gchil2936.t1 ID=Gchil2936.t1|Name=Gchil2936.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1077bp|location=Sequence derived from alignment at tig00000106_pilon:332586..333662+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGCGCAAATTCTCCCGAACCGTCGCATCCGGCGTTGCGGGCTCCACC
GCTCATCCGCGTCGCCCCAGAAATGGCGTTCAGTGCTTTTGTACAGAGAA
TACCTGCATTACCCAACTTCGCCACAACTCTCATCCCCGCCATCTCTCGA
CGAACAACTCCTCTTCTTTCCTTGCCGTCAAACCAATATCTTCGGCACTC
TCACTACGGAAATGCCGTCTCCAATTTAACTACCAAAGCCTCTGCAGATG
CTCCGCACGTTGCGGTCATCGGAGCCGGTGGCAATATGGCTACCGCTCTT
ATCAATGGTTTGGTATCTCAACAATCCACTCCCGTAATATACGCCTCTGC
TCCTTCTCTTGAGCTCCTCTCGCATCTTCCAGAGGCTGCTAAGCGATATC
AAACCACTTCAAATACCGACGCTTGCCTGCAAGCAAATGTTGTTCTGTTG
TGCGTCAAGCCGAATGTTGTTCCACTTGTTCTTTCGGAAATCGCTCCTAC
ACTTCTTCACTCGAAAAACGATCCCGTCCTTGTTTCTATTGCCGCCGGTA
TAAACACCACAACCCTACAAAAGCATTTGTCAACACCCGATCATTCAGCT
GAAAATATACCGATTGTGAGGGCCATGCCTAACTTACCTGCTTCAACACA
ATCTGCGTGCACTGTGATCTGCTCAAACAATGCGGCACAAAAATATCATA
TAAGTCTCGCCGAGCGAATCCTAACTGCGGTGGGCACGGTATATGGCGCA
CCTGAAAGTCTCATGGCATCTGCTTCTGGCCTCTCTGGTGCAGGTGTCGC
CTATGTGTTTATGATGGCTGAAGCTTTGGCTGACGCTGGCGTTAAACAAG
GGTTTTCAAGGGAACATGCCATGGCCATGGCTGCTGACACGATTAAGGGT
GCCGGAGATTTGCTGCAACAAAAGAAACACCCTGCTGTTTTGAGAAATAT
GGTGGAGAGTCCGGGAGGGGTTACTGTTGTTGGTACTTCTCAGTTGGAGG
AAAAGGGTTTTCGAGCAGCGATTGGGGCTGCTGTTGAGGGAGCAGTAAAC
AGAGCTCGTCAAATGGGCGACAACTGA