Gchil2931.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2931.t1
Unique Name	Gchil2931.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	688

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000106_pilon	contig	tig00000106_pilon:324218..326281 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2931	Gchil2931	Gracilaria chilensis NLEC103_M9 male	gene	tig00000106_pilon 324218..326281 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2931.t1.start1	Gchil2931.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000106_pilon 324218..324220 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2931.t1.CDS1	Gchil2931.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000106_pilon 324218..326281 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2931.t1.exon1	Gchil2931.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000106_pilon 324218..326281 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2931.t1.stop1	Gchil2931.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000106_pilon 326279..326281 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2931.t1	Gchil2931.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000106_pilon 324218..326281 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000106_pilon:324218..326281+
coding sequence from alignment at tig00000106_pilon:324218..326281+

mRNA sequence

>Gchil2931.t1 ID=Gchil2931.t1|Name=Gchil2931.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=688bp
MNSAPFSFPKPPAAGASDPPTRASSNSYLGGDFFKESPMLKPARAPTPPT
FLTRSSSRQLSLHPSTGRVPERLSSGPSSSSSPSGPSGPSGPSGPSAFQP
RCRGQRHPPQSRLSTSPAALHDASPSRSRRLSCTPRFISNGVKRDVQTKK
APTLFFSESTVNSFQFKHFPPPLPPRQTPNVVDLVDDAPPTSTCPPRDKL
SEIARHPSPSPLGQSAVDAYPPVPKKDSKQPRNRHRNQLKSLLNPVKTVV
KPPSIMLRSMLPPPGYSQQRKRQQMETINVEDESPSLPLPKQKQQTSQTQ
QTVVLTSCSPSSPLTLNNTAKPQQSEEAREVPKFARKRPRQTSQLAQSSQ
RRSVRLQDKSTLDPAHSTPMHPATPGFTTGEKRLPDAHITPTSVATKRPR
NSTPSDSDDTVTVVKSTGTKRARQKLFLCHEQTPYDHKRAISLLHSQNSR
YIVLSFLGMCDKDLRNLLDYDIPDVSSGGRHIELGNNRLRCISACLFRRL
KDMQVISLIVSSNKLTQIHQSIATCSELKTLDLSRNYLKSLPVQICDLSN
LLCLNVSDNKLTKLPSALSLLRKLKILNVARNNLESLPEDITEAGNALTA
LDISGNKGFQFFPRICKNWRNLEDLILTNTEVFMYLTKRERKLRAPVLIE
ELAGKSLDNLKNRTRRRKPPVRYKGAPDVSAAAVTQI*

spliced messenger RNA

>Gchil2931.t1 ID=Gchil2931.t1|Name=Gchil2931.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2064bp|location=Sequence derived from alignment at tig00000106_pilon:324218..326281+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATTCCGCCCCCTTCTCCTTTCCCAAGCCTCCCGCCGCGGGCGCGTC
CGACCCGCCCACGCGTGCGTCCTCAAACTCGTATCTGGGTGGTGACTTCT
TCAAGGAGTCGCCCATGCTCAAGCCCGCCCGCGCCCCGACCCCGCCCACT
TTTTTGACGCGTTCTTCCTCCCGTCAGTTGTCGCTGCACCCGTCCACTGG
TCGCGTGCCCGAACGCCTTTCCTCCGGCCCTTCCAGCTCTTCCAGCCCTt
ccggtccgtccggtccttccggtccgtccggtccTTCGGCCTTTCAGCCG
CGCTGCCGCGGCCAGCGCCACCCCCCGCAGAGCAGGCTATCTACCTCTCC
CGCCGCTCTACACGATGCTTCTCCTTCGCGCTCCCGCCGCCTCAGCTGCA
CCCCGCGCTTCATATCAAACGGTGTCAAACGGGACGTGCAAACCAAAAAG
GCTCCAACGTTGTTCTTTTCCGAATCTACTGTCAACTCCTTTCAGTTTAA
ACACTTTCCTCCGCCTCTTCCGCCCAGGCAGACGCCAAACGTTGTCGACT
TGGTCGACGATGCCCCTCCAACTTCCACGTGCCCCCCCCGCGACAAACTC
TCCGAAATTGCACGCCACCCTTCCCCATCCCCGTTGGGCCAATCTGCTGT
CGACGCTTACCCTCCAGTGCCCAAAAAGGATTCTAAACAACCAAGGAATC
GCCATCGCAACCAACTCAAGTCCTTGCTCAATCCAGTCAAAACTGTCGTA
AAACCCCCTTCCATAATGCTGCGCTCCATGCTTCCGCCACCTGGCTATTC
ACAACAACGAAAACGTCAGCAAATGGAAACCATTAATGTGGAGGACGAGT
CGCCATCACTTCCGCTCCCTAAACAGAAACAACAAACCTCTCAAACCCAG
CAAACCGTCGTCCTCACCTCTTGTTCTCCATCATCTCCGCTCACCCTAAA
TAACACCGCAAAGCCACAACAGTCAGAGGAGGCCAGGGAGGTCCCAAAAT
TTGCTAGGAAGCGACCACGTCAAACCTCTCAGCTCGCACAGTCTAGCCAA
AGGCGTTCCGTTCGGCTACAGGATAAAAGCACGCTAGACCCTGCCCATTC
CACCCCCATGCATCCTGCTACACCAGGTTTTACCACCGGCGAGAAACGTT
TGCCTGATGCACATATAACCCCTACGTCTGTGGCCACCAAGCGTCCGCGC
AATTCCACCCCATCGGATAGCGATGATACTGTGACTGTTGTCAAATCCAC
AGGCACCAAGCGCGCTCGCCAAAAATTGTTCTTGTGTCATGAGCAAACTC
CGTATGACCACAAACGAGCCATATCTCTTCTGCACAGTCAGAACTCAAGG
TATATTGTGCTCTCCTTTTTGGGTATGTGCGACAAAGACCTTCGGAACCT
GCTCGATTATGACATTCCAGACGTCTCGTCTGGTGGTCGTCATATTGAAC
TTGGTAATAACCGCCTACGCTGTATTTCTGCATGTCTCTTTCGCCGCCTC
AAAGATATGCAGGTCATATCTCTCATTGTATCATCTAACAAACTAACCCA
AATCCACCAATCCATAGCAACTTGCTCTGAACTGAAAACTCTGGATCTCA
GTCGCAATTACCTCAAGAGCCTCCCTGTGCAAATCTGTGATTTGTCAAAT
TTGTTGTGCCTTAACGTCTCCGATAACAAACTCACGAAACTACCTTCAGC
CCTTTCTCTACTTAGAAAGCTGAAAATTTTAAACGTCGCTAGAAACAATC
TGGAATCTCTGCCAGAGGATATTACTGAAGCTGGGAATGCGTTGACAGCG
CTCGACATTTCTGGTAATAAGGGCTTTCAATTTTTCCCCAGGATTTGTAA
GAACTGGCGTAACCTGGAAGACTTGATCTTGACAAATACTGAGGTGTTCA
TGTATCTTACAAAGAGGGAGCGCAAGTTGCGAGCACCGGTGCTCATAGAG
GAATTGGCTGGAAAGTCTTTGGACAATTTGAAGAATAGAACAAGGAGGAG
GAAACCGCCTGTGCGTTATAAAGGAGCGCCAGATGTTTCAGCAGCAGCCG
TCACACAGATTTGA

protein sequence of Gchil2931.t1

>Gchil2931.t1 ID=Gchil2931.t1|Name=Gchil2931.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=688bp
MNSAPFSFPKPPAAGASDPPTRASSNSYLGGDFFKESPMLKPARAPTPPT
FLTRSSSRQLSLHPSTGRVPERLSSGPSSSSSPSGPSGPSGPSGPSAFQP
RCRGQRHPPQSRLSTSPAALHDASPSRSRRLSCTPRFISNGVKRDVQTKK
APTLFFSESTVNSFQFKHFPPPLPPRQTPNVVDLVDDAPPTSTCPPRDKL
SEIARHPSPSPLGQSAVDAYPPVPKKDSKQPRNRHRNQLKSLLNPVKTVV
KPPSIMLRSMLPPPGYSQQRKRQQMETINVEDESPSLPLPKQKQQTSQTQ
QTVVLTSCSPSSPLTLNNTAKPQQSEEAREVPKFARKRPRQTSQLAQSSQ
RRSVRLQDKSTLDPAHSTPMHPATPGFTTGEKRLPDAHITPTSVATKRPR
NSTPSDSDDTVTVVKSTGTKRARQKLFLCHEQTPYDHKRAISLLHSQNSR
YIVLSFLGMCDKDLRNLLDYDIPDVSSGGRHIELGNNRLRCISACLFRRL
KDMQVISLIVSSNKLTQIHQSIATCSELKTLDLSRNYLKSLPVQICDLSN
LLCLNVSDNKLTKLPSALSLLRKLKILNVARNNLESLPEDITEAGNALTA
LDISGNKGFQFFPRICKNWRNLEDLILTNTEVFMYLTKRERKLRAPVLIE
ELAGKSLDNLKNRTRRRKPPVRYKGAPDVSAAAVTQI*

mRNA from alignment at tig00000106_pilon:324218..326281+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2931.t1 ID=Gchil2931.t1|Name=Gchil2931.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2064bp|location=Sequence derived from alignment at tig00000106_pilon:324218..326281+ (Gracilaria chilensis NLEC103_M9 male)
ATGAATTCCGCCCCCTTCTCCTTTCCCAAGCCTCCCGCCGCGGGCGCGTC
CGACCCGCCCACGCGTGCGTCCTCAAACTCGTATCTGGGTGGTGACTTCT
TCAAGGAGTCGCCCATGCTCAAGCCCGCCCGCGCCCCGACCCCGCCCACT
TTTTTGACGCGTTCTTCCTCCCGTCAGTTGTCGCTGCACCCGTCCACTGG
TCGCGTGCCCGAACGCCTTTCCTCCGGCCCTTCCAGCTCTTCCAGCCCTt
ccggtccgtccggtccttccggtccgtccggtccTTCGGCCTTTCAGCCG
CGCTGCCGCGGCCAGCGCCACCCCCCGCAGAGCAGGCTATCTACCTCTCC
CGCCGCTCTACACGATGCTTCTCCTTCGCGCTCCCGCCGCCTCAGCTGCA
CCCCGCGCTTCATATCAAACGGTGTCAAACGGGACGTGCAAACCAAAAAG
GCTCCAACGTTGTTCTTTTCCGAATCTACTGTCAACTCCTTTCAGTTTAA
ACACTTTCCTCCGCCTCTTCCGCCCAGGCAGACGCCAAACGTTGTCGACT
TGGTCGACGATGCCCCTCCAACTTCCACGTGCCCCCCCCGCGACAAACTC
TCCGAAATTGCACGCCACCCTTCCCCATCCCCGTTGGGCCAATCTGCTGT
CGACGCTTACCCTCCAGTGCCCAAAAAGGATTCTAAACAACCAAGGAATC
GCCATCGCAACCAACTCAAGTCCTTGCTCAATCCAGTCAAAACTGTCGTA
AAACCCCCTTCCATAATGCTGCGCTCCATGCTTCCGCCACCTGGCTATTC
ACAACAACGAAAACGTCAGCAAATGGAAACCATTAATGTGGAGGACGAGT
CGCCATCACTTCCGCTCCCTAAACAGAAACAACAAACCTCTCAAACCCAG
CAAACCGTCGTCCTCACCTCTTGTTCTCCATCATCTCCGCTCACCCTAAA
TAACACCGCAAAGCCACAACAGTCAGAGGAGGCCAGGGAGGTCCCAAAAT
TTGCTAGGAAGCGACCACGTCAAACCTCTCAGCTCGCACAGTCTAGCCAA
AGGCGTTCCGTTCGGCTACAGGATAAAAGCACGCTAGACCCTGCCCATTC
CACCCCCATGCATCCTGCTACACCAGGTTTTACCACCGGCGAGAAACGTT
TGCCTGATGCACATATAACCCCTACGTCTGTGGCCACCAAGCGTCCGCGC
AATTCCACCCCATCGGATAGCGATGATACTGTGACTGTTGTCAAATCCAC
AGGCACCAAGCGCGCTCGCCAAAAATTGTTCTTGTGTCATGAGCAAACTC
CGTATGACCACAAACGAGCCATATCTCTTCTGCACAGTCAGAACTCAAGG
TATATTGTGCTCTCCTTTTTGGGTATGTGCGACAAAGACCTTCGGAACCT
GCTCGATTATGACATTCCAGACGTCTCGTCTGGTGGTCGTCATATTGAAC
TTGGTAATAACCGCCTACGCTGTATTTCTGCATGTCTCTTTCGCCGCCTC
AAAGATATGCAGGTCATATCTCTCATTGTATCATCTAACAAACTAACCCA
AATCCACCAATCCATAGCAACTTGCTCTGAACTGAAAACTCTGGATCTCA
GTCGCAATTACCTCAAGAGCCTCCCTGTGCAAATCTGTGATTTGTCAAAT
TTGTTGTGCCTTAACGTCTCCGATAACAAACTCACGAAACTACCTTCAGC
CCTTTCTCTACTTAGAAAGCTGAAAATTTTAAACGTCGCTAGAAACAATC
TGGAATCTCTGCCAGAGGATATTACTGAAGCTGGGAATGCGTTGACAGCG
CTCGACATTTCTGGTAATAAGGGCTTTCAATTTTTCCCCAGGATTTGTAA
GAACTGGCGTAACCTGGAAGACTTGATCTTGACAAATACTGAGGTGTTCA
TGTATCTTACAAAGAGGGAGCGCAAGTTGCGAGCACCGGTGCTCATAGAG
GAATTGGCTGGAAAGTCTTTGGACAATTTGAAGAATAGAACAAGGAGGAG
GAAACCGCCTGTGCGTTATAAAGGAGCGCCAGATGTTTCAGCAGCAGCCG
TCACACAGATTTGA

Coding sequence (CDS) from alignment at tig00000106_pilon:324218..326281+

>Gchil2931.t1 ID=Gchil2931.t1|Name=Gchil2931.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2064bp|location=Sequence derived from alignment at tig00000106_pilon:324218..326281+ (Gracilaria chilensis NLEC103_M9 male)
ATGAATTCCGCCCCCTTCTCCTTTCCCAAGCCTCCCGCCGCGGGCGCGTC
CGACCCGCCCACGCGTGCGTCCTCAAACTCGTATCTGGGTGGTGACTTCT
TCAAGGAGTCGCCCATGCTCAAGCCCGCCCGCGCCCCGACCCCGCCCACT
TTTTTGACGCGTTCTTCCTCCCGTCAGTTGTCGCTGCACCCGTCCACTGG
TCGCGTGCCCGAACGCCTTTCCTCCGGCCCTTCCAGCTCTTCCAGCCCTt
ccggtccgtccggtccttccggtccgtccggtccTTCGGCCTTTCAGCCG
CGCTGCCGCGGCCAGCGCCACCCCCCGCAGAGCAGGCTATCTACCTCTCC
CGCCGCTCTACACGATGCTTCTCCTTCGCGCTCCCGCCGCCTCAGCTGCA
CCCCGCGCTTCATATCAAACGGTGTCAAACGGGACGTGCAAACCAAAAAG
GCTCCAACGTTGTTCTTTTCCGAATCTACTGTCAACTCCTTTCAGTTTAA
ACACTTTCCTCCGCCTCTTCCGCCCAGGCAGACGCCAAACGTTGTCGACT
TGGTCGACGATGCCCCTCCAACTTCCACGTGCCCCCCCCGCGACAAACTC
TCCGAAATTGCACGCCACCCTTCCCCATCCCCGTTGGGCCAATCTGCTGT
CGACGCTTACCCTCCAGTGCCCAAAAAGGATTCTAAACAACCAAGGAATC
GCCATCGCAACCAACTCAAGTCCTTGCTCAATCCAGTCAAAACTGTCGTA
AAACCCCCTTCCATAATGCTGCGCTCCATGCTTCCGCCACCTGGCTATTC
ACAACAACGAAAACGTCAGCAAATGGAAACCATTAATGTGGAGGACGAGT
CGCCATCACTTCCGCTCCCTAAACAGAAACAACAAACCTCTCAAACCCAG
CAAACCGTCGTCCTCACCTCTTGTTCTCCATCATCTCCGCTCACCCTAAA
TAACACCGCAAAGCCACAACAGTCAGAGGAGGCCAGGGAGGTCCCAAAAT
TTGCTAGGAAGCGACCACGTCAAACCTCTCAGCTCGCACAGTCTAGCCAA
AGGCGTTCCGTTCGGCTACAGGATAAAAGCACGCTAGACCCTGCCCATTC
CACCCCCATGCATCCTGCTACACCAGGTTTTACCACCGGCGAGAAACGTT
TGCCTGATGCACATATAACCCCTACGTCTGTGGCCACCAAGCGTCCGCGC
AATTCCACCCCATCGGATAGCGATGATACTGTGACTGTTGTCAAATCCAC
AGGCACCAAGCGCGCTCGCCAAAAATTGTTCTTGTGTCATGAGCAAACTC
CGTATGACCACAAACGAGCCATATCTCTTCTGCACAGTCAGAACTCAAGG
TATATTGTGCTCTCCTTTTTGGGTATGTGCGACAAAGACCTTCGGAACCT
GCTCGATTATGACATTCCAGACGTCTCGTCTGGTGGTCGTCATATTGAAC
TTGGTAATAACCGCCTACGCTGTATTTCTGCATGTCTCTTTCGCCGCCTC
AAAGATATGCAGGTCATATCTCTCATTGTATCATCTAACAAACTAACCCA
AATCCACCAATCCATAGCAACTTGCTCTGAACTGAAAACTCTGGATCTCA
GTCGCAATTACCTCAAGAGCCTCCCTGTGCAAATCTGTGATTTGTCAAAT
TTGTTGTGCCTTAACGTCTCCGATAACAAACTCACGAAACTACCTTCAGC
CCTTTCTCTACTTAGAAAGCTGAAAATTTTAAACGTCGCTAGAAACAATC
TGGAATCTCTGCCAGAGGATATTACTGAAGCTGGGAATGCGTTGACAGCG
CTCGACATTTCTGGTAATAAGGGCTTTCAATTTTTCCCCAGGATTTGTAA
GAACTGGCGTAACCTGGAAGACTTGATCTTGACAAATACTGAGGTGTTCA
TGTATCTTACAAAGAGGGAGCGCAAGTTGCGAGCACCGGTGCTCATAGAG
GAATTGGCTGGAAAGTCTTTGGACAATTTGAAGAATAGAACAAGGAGGAG
GAAACCGCCTGTGCGTTATAAAGGAGCGCCAGATGTTTCAGCAGCAGCCG
TCACACAGATTTGA