Gchil2928.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2928.t1
Unique NameGchil2928.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length447
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:316037..317377 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7G7B8
PFAMsMMR_HSR1
Max annot lvl2759|Eukaryota
KEGG koko:K03978
Evalue2.5e-72
EggNOG OGsCOG0218@1|root,KOG2486@2759|Eukaryota
DescriptionGTP binding
COG categoryV
BRITEko00000,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2928Gchil2928Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 316037..317377 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2928.t1.stop1Gchil2928.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 316037..316039 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2928.t1.CDS1Gchil2928.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 316037..317377 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2928.t1.exon1Gchil2928.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 316037..317377 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2928.t1.start1Gchil2928.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 317375..317377 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2928.t1Gchil2928.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 316037..317377 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2928.t1 ID=Gchil2928.t1|Name=Gchil2928.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=447bp
MSATPSSTFSTSSPEQVSLKSQISELARRKAARKLHNLIIDAENDENVSN
RPDASMYSSAIRSQLKLGRSDLALDLYYVRKKAQESRPETLPGDIPLTTT
LLRMTLRDDLKRKERGSAFVSLFEDLKKECSSVVEEPENHRQGMRKIMTT
LLSTVQTFLEKGETQVAGKLLELARGVAMCGKLAAVETNVFNTTIRMLGK
SKLLDNVFDILDMMRMTHVQPDNETFEFLANAAVRQVRFITGAVSMETLP
DPLGAEVAFIGRSNVGKSSLVNMICNRKALAYVSGRPGKTQQFNYFLVNE
RSPESQFYIVDLPGVGYAKVPLPVKEEWLRFMRTYLKSRTSLSLVFHLID
GRHGALRDDEELMEEIANHAGQLEYVVVLTKMDKLDRQKAKREILESIRR
SLVRNRCSADTPIVLTSSSTRLGRDEMWRHMQNALKLLGRRQPQNL*
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spliced messenger RNA

>Gchil2928.t1 ID=Gchil2928.t1|Name=Gchil2928.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1341bp|location=Sequence derived from alignment at tig00000106_pilon:316037..317377- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGCGACTCCATCTTCGACATTCTCTACTTCTTCACCTGAACAAGT
CTCCCTAAAGTCCCAGATTTCTGAACTTGCACGAAGAAAAGCCGCGCGCA
AGCTTCACAACCTGATAATTGATGCCGAGAACGACGAAAATGTTTCCAAT
CGTCCGGACGCATCGATGTATAGCTCTGCTATTCGCTCTCAGCTTAAGCT
TGGACGTTCCGATTTAGCTTTGGATCTCTACTACGTCCGAAAAAAAGCAC
AAGAGTCTCGTCCTGAGACTCTCCCCGGCGATATACCACTGACTACTACA
TTGCTCCGCATGACGCTTCGAGATGATTTAAAACGAAAAGAACGAGGGTC
TGCCTTCGTGAGTCTATTTGAAGATCTGAAGAAAGAGTGTTCAAGTGTGG
TAGAAGAACCGGAAAATCATCGCCAAGGAATGAGAAAGATAATGACAACC
CTCCTGTCTACTGTTCAAACTTTTCTGGAGAAGGGCGAGACTCAGGTAGC
GGGCAAGCTTTTGGAATTGGCACGAGGTGTGGCGATGTGTGGAAAATTGG
CTGCAGTGGAAACAAATGTATTTAATACAACGATACGAATGCTTGGAAAG
AGCAAACTGTTAGACAACGTGTTTGATATTTTGGACATGATGAGAATGAC
GCACGTGCAACCAGATAATGAGACTTTCGAGTTTCTAGCGAACGCAGCTG
TGCGGCAAGTTCGATTTATCACAGGGGCAGTGTCCATGGAGACTCTACCT
GACCCGCTTGGAGCTGAAGTTGCCTTTATCGGGAGATCAAACGTCGGGAA
AAGTTCGCTGGTGAACATGATTTGCAATCGGAAAGCGTTGGCGTACGTAA
GCGGACGCCCCGGTAAGACTCAACAATTCAACTATTTTCTGGTCAACGAG
AGGAGTCCCGAGTCGCAGTTTTACATTGTTGATCTTCCCGGAGTGGGATA
TGCCAAGGTCCCATTACCAGTCAAGGAAGAATGGCTGCGTTTCATGAGAA
CGTATCTTAAAAGTCGCACCAGCCTAAGTCTAGTTTTCCATCTGATTGAC
GGAAGACATGGTGCTCTGAGAGACGACGAAGAGCTCATGGAAGAAATTGC
AAATCATGCAGGGCAACTCGAATACGTCGTTGTCTTGACGAAGATGGACA
AGCTGGATAGGCAGAAGGCAAAGCGGGAGATACTGGAATCTATCAGGCGT
TCTCTCGTCCGGAACCGATGTTCAGCAGACACTCCTATCGTTCTAACGTC
GTCCTCGACTCGTCTCGGTCGAGATGAGATGTGGAGACATATGCAAAACG
CACTGAAGTTGCTAGGGCGTAGACAGCCCCAGAATCTTTAA
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protein sequence of Gchil2928.t1

>Gchil2928.t1 ID=Gchil2928.t1|Name=Gchil2928.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=447bp
MSATPSSTFSTSSPEQVSLKSQISELARRKAARKLHNLIIDAENDENVSN
RPDASMYSSAIRSQLKLGRSDLALDLYYVRKKAQESRPETLPGDIPLTTT
LLRMTLRDDLKRKERGSAFVSLFEDLKKECSSVVEEPENHRQGMRKIMTT
LLSTVQTFLEKGETQVAGKLLELARGVAMCGKLAAVETNVFNTTIRMLGK
SKLLDNVFDILDMMRMTHVQPDNETFEFLANAAVRQVRFITGAVSMETLP
DPLGAEVAFIGRSNVGKSSLVNMICNRKALAYVSGRPGKTQQFNYFLVNE
RSPESQFYIVDLPGVGYAKVPLPVKEEWLRFMRTYLKSRTSLSLVFHLID
GRHGALRDDEELMEEIANHAGQLEYVVVLTKMDKLDRQKAKREILESIRR
SLVRNRCSADTPIVLTSSSTRLGRDEMWRHMQNALKLLGRRQPQNL*
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mRNA from alignment at tig00000106_pilon:316037..317377-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2928.t1 ID=Gchil2928.t1|Name=Gchil2928.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1341bp|location=Sequence derived from alignment at tig00000106_pilon:316037..317377- (Gracilaria chilensis NLEC103_M9 male)
ATGTCAGCGACTCCATCTTCGACATTCTCTACTTCTTCACCTGAACAAGT
CTCCCTAAAGTCCCAGATTTCTGAACTTGCACGAAGAAAAGCCGCGCGCA
AGCTTCACAACCTGATAATTGATGCCGAGAACGACGAAAATGTTTCCAAT
CGTCCGGACGCATCGATGTATAGCTCTGCTATTCGCTCTCAGCTTAAGCT
TGGACGTTCCGATTTAGCTTTGGATCTCTACTACGTCCGAAAAAAAGCAC
AAGAGTCTCGTCCTGAGACTCTCCCCGGCGATATACCACTGACTACTACA
TTGCTCCGCATGACGCTTCGAGATGATTTAAAACGAAAAGAACGAGGGTC
TGCCTTCGTGAGTCTATTTGAAGATCTGAAGAAAGAGTGTTCAAGTGTGG
TAGAAGAACCGGAAAATCATCGCCAAGGAATGAGAAAGATAATGACAACC
CTCCTGTCTACTGTTCAAACTTTTCTGGAGAAGGGCGAGACTCAGGTAGC
GGGCAAGCTTTTGGAATTGGCACGAGGTGTGGCGATGTGTGGAAAATTGG
CTGCAGTGGAAACAAATGTATTTAATACAACGATACGAATGCTTGGAAAG
AGCAAACTGTTAGACAACGTGTTTGATATTTTGGACATGATGAGAATGAC
GCACGTGCAACCAGATAATGAGACTTTCGAGTTTCTAGCGAACGCAGCTG
TGCGGCAAGTTCGATTTATCACAGGGGCAGTGTCCATGGAGACTCTACCT
GACCCGCTTGGAGCTGAAGTTGCCTTTATCGGGAGATCAAACGTCGGGAA
AAGTTCGCTGGTGAACATGATTTGCAATCGGAAAGCGTTGGCGTACGTAA
GCGGACGCCCCGGTAAGACTCAACAATTCAACTATTTTCTGGTCAACGAG
AGGAGTCCCGAGTCGCAGTTTTACATTGTTGATCTTCCCGGAGTGGGATA
TGCCAAGGTCCCATTACCAGTCAAGGAAGAATGGCTGCGTTTCATGAGAA
CGTATCTTAAAAGTCGCACCAGCCTAAGTCTAGTTTTCCATCTGATTGAC
GGAAGACATGGTGCTCTGAGAGACGACGAAGAGCTCATGGAAGAAATTGC
AAATCATGCAGGGCAACTCGAATACGTCGTTGTCTTGACGAAGATGGACA
AGCTGGATAGGCAGAAGGCAAAGCGGGAGATACTGGAATCTATCAGGCGT
TCTCTCGTCCGGAACCGATGTTCAGCAGACACTCCTATCGTTCTAACGTC
GTCCTCGACTCGTCTCGGTCGAGATGAGATGTGGAGACATATGCAAAACG
CACTGAAGTTGCTAGGGCGTAGACAGCCCCAGAATCTTTAA
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Coding sequence (CDS) from alignment at tig00000106_pilon:316037..317377-

>Gchil2928.t1 ID=Gchil2928.t1|Name=Gchil2928.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1341bp|location=Sequence derived from alignment at tig00000106_pilon:316037..317377- (Gracilaria chilensis NLEC103_M9 male)
ATGTCAGCGACTCCATCTTCGACATTCTCTACTTCTTCACCTGAACAAGT
CTCCCTAAAGTCCCAGATTTCTGAACTTGCACGAAGAAAAGCCGCGCGCA
AGCTTCACAACCTGATAATTGATGCCGAGAACGACGAAAATGTTTCCAAT
CGTCCGGACGCATCGATGTATAGCTCTGCTATTCGCTCTCAGCTTAAGCT
TGGACGTTCCGATTTAGCTTTGGATCTCTACTACGTCCGAAAAAAAGCAC
AAGAGTCTCGTCCTGAGACTCTCCCCGGCGATATACCACTGACTACTACA
TTGCTCCGCATGACGCTTCGAGATGATTTAAAACGAAAAGAACGAGGGTC
TGCCTTCGTGAGTCTATTTGAAGATCTGAAGAAAGAGTGTTCAAGTGTGG
TAGAAGAACCGGAAAATCATCGCCAAGGAATGAGAAAGATAATGACAACC
CTCCTGTCTACTGTTCAAACTTTTCTGGAGAAGGGCGAGACTCAGGTAGC
GGGCAAGCTTTTGGAATTGGCACGAGGTGTGGCGATGTGTGGAAAATTGG
CTGCAGTGGAAACAAATGTATTTAATACAACGATACGAATGCTTGGAAAG
AGCAAACTGTTAGACAACGTGTTTGATATTTTGGACATGATGAGAATGAC
GCACGTGCAACCAGATAATGAGACTTTCGAGTTTCTAGCGAACGCAGCTG
TGCGGCAAGTTCGATTTATCACAGGGGCAGTGTCCATGGAGACTCTACCT
GACCCGCTTGGAGCTGAAGTTGCCTTTATCGGGAGATCAAACGTCGGGAA
AAGTTCGCTGGTGAACATGATTTGCAATCGGAAAGCGTTGGCGTACGTAA
GCGGACGCCCCGGTAAGACTCAACAATTCAACTATTTTCTGGTCAACGAG
AGGAGTCCCGAGTCGCAGTTTTACATTGTTGATCTTCCCGGAGTGGGATA
TGCCAAGGTCCCATTACCAGTCAAGGAAGAATGGCTGCGTTTCATGAGAA
CGTATCTTAAAAGTCGCACCAGCCTAAGTCTAGTTTTCCATCTGATTGAC
GGAAGACATGGTGCTCTGAGAGACGACGAAGAGCTCATGGAAGAAATTGC
AAATCATGCAGGGCAACTCGAATACGTCGTTGTCTTGACGAAGATGGACA
AGCTGGATAGGCAGAAGGCAAAGCGGGAGATACTGGAATCTATCAGGCGT
TCTCTCGTCCGGAACCGATGTTCAGCAGACACTCCTATCGTTCTAACGTC
GTCCTCGACTCGTCTCGGTCGAGATGAGATGTGGAGACATATGCAAAACG
CACTGAAGTTGCTAGGGCGTAGACAGCCCCAGAATCTTTAA
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