Gchil2923.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2923.t1
Unique NameGchil2923.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length290
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:305303..306434 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702968.1
Preferred namebem46
PFAMsHydrolase_4,Peptidase_S9
Max annot lvl2759|Eukaryota
KEGG koko:K06889
GOsGO:0000322,GO:0000323,GO:0000324,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005773,GO:0005783,GO:0005886,GO:0007275,GO:0008150,GO:0012505,GO:0016020,GO:0016787,GO:0016788,GO:0019866,GO:0022622,GO:0031090,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0048364,GO:0048731,GO:0048856,GO:0071944,GO:0099402
Evalue2.19e-95
EggNOG OGsCOG1073@1|root,KOG4391@2759|Eukaryota
Descriptionprotein depalmitoylation
COG categoryO
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2923Gchil2923Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 305303..306434 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2923.t1Gchil2923.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 305303..306434 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2923.t1.start1Gchil2923.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 305303..305305 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2923.t1.CDS1Gchil2923.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 305303..305586 +
Gchil2923.t1.CDS2Gchil2923.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 305674..306072 +
Gchil2923.t1.CDS3Gchil2923.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 306168..306276 +
Gchil2923.t1.CDS4Gchil2923.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 306357..306434 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2923.t1.exon1Gchil2923.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 305303..305586 +
Gchil2923.t1.exon2Gchil2923.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 305674..306072 +
Gchil2923.t1.exon3Gchil2923.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 306168..306276 +
Gchil2923.t1.exon4Gchil2923.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 306357..306434 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2923.t1.intron1Gchil2923.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000106_pilon 305587..305673 +
Gchil2923.t1.intron2Gchil2923.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000106_pilon 306073..306167 +
Gchil2923.t1.intron3Gchil2923.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00000106_pilon 306277..306356 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2923.t1.stop1Gchil2923.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 306432..306434 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2923.t1 ID=Gchil2923.t1|Name=Gchil2923.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=290bp
MTLNLAQIFVVAGATISGSVLAALYVFQEKLVYHPTIPTREYEKNPQDYG
MDYIDVDVLTEDRVRIHGWLIKQGRPKEAPTLLYFHGNAGNIGHRLPDVR
YYHSDGFNVFMVSYRGYGRSDGYPSEKGMKLDAAAALEYVRDRSDLVDTN
RIYVFGRSIGGACAIALASSSTAKNTIRGVIVENTFTSTNELVDILLPPL
RPFKAFNRNRWDSLSIINEIQVPILFLSGMQDALVPPEHMKKLRAAARKA
PFSTMHIVENGGHNDTWWQGGGQYRREIREFLRRIEEGS*
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spliced messenger RNA

>Gchil2923.t1 ID=Gchil2923.t1|Name=Gchil2923.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=870bp|location=Sequence derived from alignment at tig00000106_pilon:305303..306434+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCTCAACTTGGCCCAGATTTTCGTAGTGGCTGGAGCAACTATTAG
TGGCTCTGTTCTCGCTGCTCTCTACGTTTTTCAAGAGAAGCTTGTATATC
ACCCCACGATCCCGACTCGAGAATATGAGAAGAATCCACAAGACTATGGA
ATGGACTACATTGATGTCGATGTCCTGACAGAGGATCGCGTTCGAATTCA
CGGATGGCTCATCAAACAAGGTCGTCCAAAAGAAGCGCCTACTCTTCTCT
ACTTTCACGGCAACGCCGGAAATATTGGGCATAGACTTCCCGATGTTCGT
TACTATCATTCCGACGGATTCAATGTTTTTATGGTCTCGTATCGTGGTTA
TGGCCGTTCGGATGGCTATCCTTCAGAGAAAGGAATGAAACTTGATGCAG
CGGCTGCCCTGGAATATGTTCGAGACCGGAGCGACCTCGTAGACACAAAT
CGCATCTACGTCTTTGGCAGATCCATAGGTGGCGCATGTGCTATTGCACT
CGCCTCGAGCTCGACTGCAAAGAACACAATTCGCGGTGTGATTGTCGAAA
ACACTTTCACGTCAACAAATGAGCTTGTTGACATATTACTGCCACCACTG
CGACCGTTCAAAGCCTTCAATAGAAACAGATGGGACTCATTGAGCATCAT
CAACGAAATTCAGGTACCGATTCTATTTCTAAGCGGTATGCAGGATGCGT
TGGTTCCCCCGGAACACATGAAGAAGCTCCGCGCTGCGGCGCGCAAGGCG
CCCTTTTCTACTATGCACATTGTCGAGAATGGTGGGCACAACGATACATG
GTGGCAAGGGGGTGGCCAATACCGCAGGGAAATCCGTGAATTCTTGAGAC
GAATAGAAGAAGGATCGTAG
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protein sequence of Gchil2923.t1

>Gchil2923.t1 ID=Gchil2923.t1|Name=Gchil2923.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=290bp
MTLNLAQIFVVAGATISGSVLAALYVFQEKLVYHPTIPTREYEKNPQDYG
MDYIDVDVLTEDRVRIHGWLIKQGRPKEAPTLLYFHGNAGNIGHRLPDVR
YYHSDGFNVFMVSYRGYGRSDGYPSEKGMKLDAAAALEYVRDRSDLVDTN
RIYVFGRSIGGACAIALASSSTAKNTIRGVIVENTFTSTNELVDILLPPL
RPFKAFNRNRWDSLSIINEIQVPILFLSGMQDALVPPEHMKKLRAAARKA
PFSTMHIVENGGHNDTWWQGGGQYRREIREFLRRIEEGS*
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mRNA from alignment at tig00000106_pilon:305303..306434+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2923.t1 ID=Gchil2923.t1|Name=Gchil2923.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1132bp|location=Sequence derived from alignment at tig00000106_pilon:305303..306434+ (Gracilaria chilensis NLEC103_M9 male)
ATGACGCTCAACTTGGCCCAGATTTTCGTAGTGGCTGGAGCAACTATTAG
TGGCTCTGTTCTCGCTGCTCTCTACGTTTTTCAAGAGAAGCTTGTATATC
ACCCCACGATCCCGACTCGAGAATATGAGAAGAATCCACAAGACTATGGA
ATGGACTACATTGATGTCGATGTCCTGACAGAGGATCGCGTTCGAATTCA
CGGATGGCTCATCAAACAAGGTCGTCCAAAAGAAGCGCCTACTCTTCTCT
ACTTTCACGGCAACGCCGGAAATATTGGGCATAGGTCAGTTATTATTCCT
TACCAATCGTCATCTACAGATTTGCGTATGTTTTTATGAATCTCACACGA
ATAGACGTTTGAATATCAAAGACTTCCCGATGTTCGTTACTATCATTCCG
ACGGATTCAATGTTTTTATGGTCTCGTATCGTGGTTATGGCCGTTCGGAT
GGCTATCCTTCAGAGAAAGGAATGAAACTTGATGCAGCGGCTGCCCTGGA
ATATGTTCGAGACCGGAGCGACCTCGTAGACACAAATCGCATCTACGTCT
TTGGCAGATCCATAGGTGGCGCATGTGCTATTGCACTCGCCTCGAGCTCG
ACTGCAAAGAACACAATTCGCGGTGTGATTGTCGAAAACACTTTCACGTC
AACAAATGAGCTTGTTGACATATTACTGCCACCACTGCGACCGTTCAAAG
CCTTCAATAGAAACAGATGGGACTCATTGAGCATCATCAACGAAATTCAG
GTACCGATTCTATTTCTAAGGTAAGACATGTCTTGAGATGAACGTCTGTT
GAGTATCTACGCCTCAAAAATCCACTCCTAACAAACCGATATGCTGTGAT
ATCTGTTGATGACAGCGGTATGCAGGATGCGTTGGTTCCCCCGGAACACA
TGAAGAAGCTCCGCGCTGCGGCGCGCAAGGCGCCCTTTTCTACTATGCAC
ATTGTCGAGAATGGTGGGCACAACGTAAGTAGACTCGCATATTAACCTCG
TTCTCAACTTGCTCTGGCGAAGACCTAACGAGTTCTCACTCTTCTGATCC
GTAGGATACATGGTGGCAAGGGGGTGGCCAATACCGCAGGGAAATCCGTG
AATTCTTGAGACGAATAGAAGAAGGATCGTAG
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Coding sequence (CDS) from alignment at tig00000106_pilon:305303..306434+

>Gchil2923.t1 ID=Gchil2923.t1|Name=Gchil2923.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=870bp|location=Sequence derived from alignment at tig00000106_pilon:305303..306434+ (Gracilaria chilensis NLEC103_M9 male)
ATGACGCTCAACTTGGCCCAGATTTTCGTAGTGGCTGGAGCAACTATTAG
TGGCTCTGTTCTCGCTGCTCTCTACGTTTTTCAAGAGAAGCTTGTATATC
ACCCCACGATCCCGACTCGAGAATATGAGAAGAATCCACAAGACTATGGA
ATGGACTACATTGATGTCGATGTCCTGACAGAGGATCGCGTTCGAATTCA
CGGATGGCTCATCAAACAAGGTCGTCCAAAAGAAGCGCCTACTCTTCTCT
ACTTTCACGGCAACGCCGGAAATATTGGGCATAGACTTCCCGATGTTCGT
TACTATCATTCCGACGGATTCAATGTTTTTATGGTCTCGTATCGTGGTTA
TGGCCGTTCGGATGGCTATCCTTCAGAGAAAGGAATGAAACTTGATGCAG
CGGCTGCCCTGGAATATGTTCGAGACCGGAGCGACCTCGTAGACACAAAT
CGCATCTACGTCTTTGGCAGATCCATAGGTGGCGCATGTGCTATTGCACT
CGCCTCGAGCTCGACTGCAAAGAACACAATTCGCGGTGTGATTGTCGAAA
ACACTTTCACGTCAACAAATGAGCTTGTTGACATATTACTGCCACCACTG
CGACCGTTCAAAGCCTTCAATAGAAACAGATGGGACTCATTGAGCATCAT
CAACGAAATTCAGGTACCGATTCTATTTCTAAGCGGTATGCAGGATGCGT
TGGTTCCCCCGGAACACATGAAGAAGCTCCGCGCTGCGGCGCGCAAGGCG
CCCTTTTCTACTATGCACATTGTCGAGAATGGTGGGCACAACGATACATG
GTGGCAAGGGGGTGGCCAATACCGCAGGGAAATCCGTGAATTCTTGAGAC
GAATAGAAGAAGGATCGTAG
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