Gchil2920.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2920.t1
Unique Name	Gchil2920.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	279

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000106_pilon	contig	tig00000106_pilon:265051..265887 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	642492.Clole_3977
PFAMs	Glyco_hydro_16,RicinB_lectin_2
Max annot lvl	186801\|Clostridia
Evalue	2.44e-39
EggNOG OGs	COG2273@1\|root,COG2273@2\|Bacteria,1UY13@1239\|Firmicutes,25BTY@186801\|Clostridia
Description	Glycosyl hydrolases family 16
COG category	G

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2920	Gchil2920	Gracilaria chilensis NLEC103_M9 male	gene	tig00000106_pilon 265051..265887 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2920.t1.start1	Gchil2920.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000106_pilon 265051..265053 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2920.t1.CDS1	Gchil2920.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000106_pilon 265051..265887 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2920.t1.exon1	Gchil2920.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000106_pilon 265051..265887 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2920.t1.stop1	Gchil2920.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000106_pilon 265885..265887 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2920.t1	Gchil2920.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000106_pilon 265051..265887 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000106_pilon:265051..265887+
coding sequence from alignment at tig00000106_pilon:265051..265887+

mRNA sequence

>Gchil2920.t1 ID=Gchil2920.t1|Name=Gchil2920.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=279bp
MGARCIIVALGACVWYAHASKASSSSAIGDARREQCIVPDHCYFLERFQE
RNGERWEVEHDWANELPFNGGWNRDNVRFDEQNAQLVLSVDNKPTSGKPF
SAAQVATRKWHGYGCYEVRMQPAAQSGVVTAFFSLTGPYDQAPGGGTQHN
EVDIEFIWRPGPTRVVLQTNYFTDGRGGHEQLVELPADAHRAMHNYAFRW
NSSGVEWLVDGVSVRWASSMTPKLRDSPHKVFFNMWPVHDNVADWAGRFS
FSRRVFAFVDGVRFSSGERCAIANNFDP*

spliced messenger RNA

>Gchil2920.t1 ID=Gchil2920.t1|Name=Gchil2920.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=837bp|location=Sequence derived from alignment at tig00000106_pilon:265051..265887+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGCACGGTGTATCATTGTGGCACTCGGCGCATGCGTGTGGTACGC
GCACGCCTCCAAGGCGTCATCGTCATCAGCAATTGGGGACGCACGGCGTG
AGCAGTGCATAGTTCCGGACCATTGCTACTTTCTGGAGCGTTTCCAAGAG
CGAAACGGCGAGCGGTGGGAGGTGGAGCACGACTGGGCAAACGAGCTTCC
GTTCAACGGCGGTTGGAACCGTGACAATGTGCGCTTCGACGAGCAAAATG
CACAGCTAGTGCTGTCTGTGGACAACAAGCCCACGAGCGGCAAGCCGTTC
TCCGCGGCGCAGGTTGCCACACGCAAGTGGCACGGATACGGCTGCTACGA
GGTGCGCATGCAACCAGCAGCACAGTCAGGCGTGGTGACGGCGTTCTTCT
CGCTAACCGGACCGTACGACCAGGCGCCCGGCGGTGGCACACAGCACAAC
GAGGTGGACATCGAGTTCATTTGGCGCCCGGGCCCGACGCGAGTCGTGCT
GCAAACCAACTACTTCACAGACGGACGCGGCGGGCACGAACAGCTAGTGG
AGCTGCCAGCCGACGCGCACCGCGCCATGCACAACTACGCGTTTCGGTGG
AACAGCTCAGGCGTGGAGTGGCTTGTGGACGGCGTTAGCGTGCGTTGGGC
GTCTTCGATGACGCCCAAATTACGCGACAGTCCACATAAAGTGTTCTTCA
ACATGTGGCCCGTGCACGACAACGTGGCGGACTGGGCGGGGCGCTTTTCG
TTCTCGCGACGCGTGTTTGCGTTTGTGGACGGCGTGCGCTTCAGCAGCGG
CGAGCGCTGTGCCATTGCCAACAACTTCGACCCGTAA

protein sequence of Gchil2920.t1

>Gchil2920.t1 ID=Gchil2920.t1|Name=Gchil2920.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=279bp
MGARCIIVALGACVWYAHASKASSSSAIGDARREQCIVPDHCYFLERFQE
RNGERWEVEHDWANELPFNGGWNRDNVRFDEQNAQLVLSVDNKPTSGKPF
SAAQVATRKWHGYGCYEVRMQPAAQSGVVTAFFSLTGPYDQAPGGGTQHN
EVDIEFIWRPGPTRVVLQTNYFTDGRGGHEQLVELPADAHRAMHNYAFRW
NSSGVEWLVDGVSVRWASSMTPKLRDSPHKVFFNMWPVHDNVADWAGRFS
FSRRVFAFVDGVRFSSGERCAIANNFDP*

mRNA from alignment at tig00000106_pilon:265051..265887+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2920.t1 ID=Gchil2920.t1|Name=Gchil2920.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=837bp|location=Sequence derived from alignment at tig00000106_pilon:265051..265887+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGAGCACGGTGTATCATTGTGGCACTCGGCGCATGCGTGTGGTACGC
GCACGCCTCCAAGGCGTCATCGTCATCAGCAATTGGGGACGCACGGCGTG
AGCAGTGCATAGTTCCGGACCATTGCTACTTTCTGGAGCGTTTCCAAGAG
CGAAACGGCGAGCGGTGGGAGGTGGAGCACGACTGGGCAAACGAGCTTCC
GTTCAACGGCGGTTGGAACCGTGACAATGTGCGCTTCGACGAGCAAAATG
CACAGCTAGTGCTGTCTGTGGACAACAAGCCCACGAGCGGCAAGCCGTTC
TCCGCGGCGCAGGTTGCCACACGCAAGTGGCACGGATACGGCTGCTACGA
GGTGCGCATGCAACCAGCAGCACAGTCAGGCGTGGTGACGGCGTTCTTCT
CGCTAACCGGACCGTACGACCAGGCGCCCGGCGGTGGCACACAGCACAAC
GAGGTGGACATCGAGTTCATTTGGCGCCCGGGCCCGACGCGAGTCGTGCT
GCAAACCAACTACTTCACAGACGGACGCGGCGGGCACGAACAGCTAGTGG
AGCTGCCAGCCGACGCGCACCGCGCCATGCACAACTACGCGTTTCGGTGG
AACAGCTCAGGCGTGGAGTGGCTTGTGGACGGCGTTAGCGTGCGTTGGGC
GTCTTCGATGACGCCCAAATTACGCGACAGTCCACATAAAGTGTTCTTCA
ACATGTGGCCCGTGCACGACAACGTGGCGGACTGGGCGGGGCGCTTTTCG
TTCTCGCGACGCGTGTTTGCGTTTGTGGACGGCGTGCGCTTCAGCAGCGG
CGAGCGCTGTGCCATTGCCAACAACTTCGACCCGTAA

Coding sequence (CDS) from alignment at tig00000106_pilon:265051..265887+

>Gchil2920.t1 ID=Gchil2920.t1|Name=Gchil2920.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=837bp|location=Sequence derived from alignment at tig00000106_pilon:265051..265887+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGAGCACGGTGTATCATTGTGGCACTCGGCGCATGCGTGTGGTACGC
GCACGCCTCCAAGGCGTCATCGTCATCAGCAATTGGGGACGCACGGCGTG
AGCAGTGCATAGTTCCGGACCATTGCTACTTTCTGGAGCGTTTCCAAGAG
CGAAACGGCGAGCGGTGGGAGGTGGAGCACGACTGGGCAAACGAGCTTCC
GTTCAACGGCGGTTGGAACCGTGACAATGTGCGCTTCGACGAGCAAAATG
CACAGCTAGTGCTGTCTGTGGACAACAAGCCCACGAGCGGCAAGCCGTTC
TCCGCGGCGCAGGTTGCCACACGCAAGTGGCACGGATACGGCTGCTACGA
GGTGCGCATGCAACCAGCAGCACAGTCAGGCGTGGTGACGGCGTTCTTCT
CGCTAACCGGACCGTACGACCAGGCGCCCGGCGGTGGCACACAGCACAAC
GAGGTGGACATCGAGTTCATTTGGCGCCCGGGCCCGACGCGAGTCGTGCT
GCAAACCAACTACTTCACAGACGGACGCGGCGGGCACGAACAGCTAGTGG
AGCTGCCAGCCGACGCGCACCGCGCCATGCACAACTACGCGTTTCGGTGG
AACAGCTCAGGCGTGGAGTGGCTTGTGGACGGCGTTAGCGTGCGTTGGGC
GTCTTCGATGACGCCCAAATTACGCGACAGTCCACATAAAGTGTTCTTCA
ACATGTGGCCCGTGCACGACAACGTGGCGGACTGGGCGGGGCGCTTTTCG
TTCTCGCGACGCGTGTTTGCGTTTGTGGACGGCGTGCGCTTCAGCAGCGG
CGAGCGCTGTGCCATTGCCAACAACTTCGACCCGTAA