Gchil2916.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2916.t1
Unique Name	Gchil2916.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	266

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000106_pilon	contig	tig00000106_pilon:257672..258469 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	6500.XP_005102037.1
Preferred name	NDUFAF5
PFAMs	Methyltransf_11,Methyltransf_23
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K18162
KEGG Pathway	ko04714,map04714
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006464,GO:0006807,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0009987,GO:0010257,GO:0016020,GO:0016043,GO:0018193,GO:0018195,GO:0019538,GO:0019866,GO:0019898,GO:0022607,GO:0030961,GO:0031090,GO:0031312,GO:0031314,GO:0031966,GO:0031967,GO:0031975,GO:0032981,GO:0033108,GO:0034622,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0065003,GO:0071704,GO:0071840,GO:1901564
Evalue	5.78e-36
EggNOG OGs	COG0500@1\|root,KOG2940@2759\|Eukaryota,38S4I@33154\|Opisthokonta,3BCAZ@33208\|Metazoa,3CUJX@33213\|Bilateria
Description	peptidyl-arginine hydroxylation
COG category	Q
BRITE	ko00000,ko00001,ko01000,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2916	Gchil2916	Gracilaria chilensis NLEC103_M9 male	gene	tig00000106_pilon 257672..258469 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2916.t1.start1	Gchil2916.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000106_pilon 257672..257674 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2916.t1.CDS1	Gchil2916.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000106_pilon 257672..258469 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2916.t1.exon1	Gchil2916.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000106_pilon 257672..258469 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2916.t1.stop1	Gchil2916.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000106_pilon 258467..258469 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2916.t1	Gchil2916.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000106_pilon 257672..258469 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000106_pilon:257672..258469+
coding sequence from alignment at tig00000106_pilon:257672..258469+

mRNA sequence

>Gchil2916.t1 ID=Gchil2916.t1|Name=Gchil2916.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=266bp
MAREVVERLHDIRRDFPLALDLFCGHAHVLRALQARHSTKIERLLQTDVH
QAVVARAASHADGIISHHQDAFVFREGDHPSKLRVHDDTLHAVLSVGALH
WVNDLPALLRAASSKLRADGLVLGALLGGDSLYELRASLHEAEDELLARA
AARTSPTVRVGDAARLLADARLLAPAVDVDRVVVSYADMWSVMRHVRAMG
EGNALRARHHCAPRRVLDRAAAIYAERFPAPLNNNNNNNNNNNDINNNVG
VAATFDLIYFIGWKR*

spliced messenger RNA

>Gchil2916.t1 ID=Gchil2916.t1|Name=Gchil2916.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=798bp|location=Sequence derived from alignment at tig00000106_pilon:257672..258469+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCGCGAAGTGGTGGAGCGTCTTCACGACATTCGTCGCGACTTTCC
ACTCGCGCTCGACCTCTTCTGCGGCCACGCGCACGTGCTTCGCGCCCTCC
AGGCGCGTCACAGCACCAAGATCGAGCGCTTGCTACAGACGGACGTACAC
CAAGCCGTCGTGGCTCGCGCAGCATCGCATGCAGACGGCATTATTAGTCA
TCACCAAGACGCGTTTGTGTTTCGTGAGGGTGACCATCCCTCAAAACTAC
GCGTGCACGACGACACGTTACATGCAGTGTTATCGGTGGGCGCGTTACAT
TGGGTGAATGATCTACCCGCGCTGTTACGCGCGGCAAGCAGCAAACTTCG
CGCAGACGGTTTGGTGTTGGGCGCTTTGTTGGGCGGCGATTCGTTGTATG
AACTGCGCGCTAGTCTTCACGAGGCTGAGGACGAGTTATTGGCGCGCGCT
GCGGCGCGTACTTCGCCTACGGTGCGCGTGGGCGACGCGGCGAGATTGCT
GGCAGACGCTCGCTTGTTGGCTCCCGCCGTGGACGTCGACCGCGTCGTCG
TGTCGTACGCCGACATGTGGAGTGTCATGCGCCATGTGCGCGCCATGGGC
GAGGGCAACGCGCTACGCGCGCGTCACCACTGTGCGCCGCGTCGCGTACT
TGATCGCGCCGCCGCCATCTACGCCGAGCGCTTCCCCGCGCCGCTcaaca
acaacaacaacaacaacaacaacaacaacgacatcaacaacaacGTCGGC
GTTGCCGCCACCTTCGATCTCATCTACTTCATCGGCTGGAAGCGCTGA

protein sequence of Gchil2916.t1

>Gchil2916.t1 ID=Gchil2916.t1|Name=Gchil2916.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=266bp
MAREVVERLHDIRRDFPLALDLFCGHAHVLRALQARHSTKIERLLQTDVH
QAVVARAASHADGIISHHQDAFVFREGDHPSKLRVHDDTLHAVLSVGALH
WVNDLPALLRAASSKLRADGLVLGALLGGDSLYELRASLHEAEDELLARA
AARTSPTVRVGDAARLLADARLLAPAVDVDRVVVSYADMWSVMRHVRAMG
EGNALRARHHCAPRRVLDRAAAIYAERFPAPLNNNNNNNNNNNDINNNVG
VAATFDLIYFIGWKR*

mRNA from alignment at tig00000106_pilon:257672..258469+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2916.t1 ID=Gchil2916.t1|Name=Gchil2916.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=798bp|location=Sequence derived from alignment at tig00000106_pilon:257672..258469+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCGCGAAGTGGTGGAGCGTCTTCACGACATTCGTCGCGACTTTCC
ACTCGCGCTCGACCTCTTCTGCGGCCACGCGCACGTGCTTCGCGCCCTCC
AGGCGCGTCACAGCACCAAGATCGAGCGCTTGCTACAGACGGACGTACAC
CAAGCCGTCGTGGCTCGCGCAGCATCGCATGCAGACGGCATTATTAGTCA
TCACCAAGACGCGTTTGTGTTTCGTGAGGGTGACCATCCCTCAAAACTAC
GCGTGCACGACGACACGTTACATGCAGTGTTATCGGTGGGCGCGTTACAT
TGGGTGAATGATCTACCCGCGCTGTTACGCGCGGCAAGCAGCAAACTTCG
CGCAGACGGTTTGGTGTTGGGCGCTTTGTTGGGCGGCGATTCGTTGTATG
AACTGCGCGCTAGTCTTCACGAGGCTGAGGACGAGTTATTGGCGCGCGCT
GCGGCGCGTACTTCGCCTACGGTGCGCGTGGGCGACGCGGCGAGATTGCT
GGCAGACGCTCGCTTGTTGGCTCCCGCCGTGGACGTCGACCGCGTCGTCG
TGTCGTACGCCGACATGTGGAGTGTCATGCGCCATGTGCGCGCCATGGGC
GAGGGCAACGCGCTACGCGCGCGTCACCACTGTGCGCCGCGTCGCGTACT
TGATCGCGCCGCCGCCATCTACGCCGAGCGCTTCCCCGCGCCGCTcaaca
acaacaacaacaacaacaacaacaacaacgacatcaacaacaacGTCGGC
GTTGCCGCCACCTTCGATCTCATCTACTTCATCGGCTGGAAGCGCTGA

Coding sequence (CDS) from alignment at tig00000106_pilon:257672..258469+

>Gchil2916.t1 ID=Gchil2916.t1|Name=Gchil2916.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=798bp|location=Sequence derived from alignment at tig00000106_pilon:257672..258469+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCGCGAAGTGGTGGAGCGTCTTCACGACATTCGTCGCGACTTTCC
ACTCGCGCTCGACCTCTTCTGCGGCCACGCGCACGTGCTTCGCGCCCTCC
AGGCGCGTCACAGCACCAAGATCGAGCGCTTGCTACAGACGGACGTACAC
CAAGCCGTCGTGGCTCGCGCAGCATCGCATGCAGACGGCATTATTAGTCA
TCACCAAGACGCGTTTGTGTTTCGTGAGGGTGACCATCCCTCAAAACTAC
GCGTGCACGACGACACGTTACATGCAGTGTTATCGGTGGGCGCGTTACAT
TGGGTGAATGATCTACCCGCGCTGTTACGCGCGGCAAGCAGCAAACTTCG
CGCAGACGGTTTGGTGTTGGGCGCTTTGTTGGGCGGCGATTCGTTGTATG
AACTGCGCGCTAGTCTTCACGAGGCTGAGGACGAGTTATTGGCGCGCGCT
GCGGCGCGTACTTCGCCTACGGTGCGCGTGGGCGACGCGGCGAGATTGCT
GGCAGACGCTCGCTTGTTGGCTCCCGCCGTGGACGTCGACCGCGTCGTCG
TGTCGTACGCCGACATGTGGAGTGTCATGCGCCATGTGCGCGCCATGGGC
GAGGGCAACGCGCTACGCGCGCGTCACCACTGTGCGCCGCGTCGCGTACT
TGATCGCGCCGCCGCCATCTACGCCGAGCGCTTCCCCGCGCCGCTcaaca
acaacaacaacaacaacaacaacaacaacgacatcaacaacaacGTCGGC
GTTGCCGCCACCTTCGATCTCATCTACTTCATCGGCTGGAAGCGCTGA