Gchil2907.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2907.t1
Unique Name	Gchil2907.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	394

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000106_pilon	contig	tig00000106_pilon:177936..179117 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1348583.ATLH01000008_gene702
PFAMs	Lactonase
Max annot lvl	976\|Bacteroidetes
KEGG rclass	RC00537
KEGG ko	ko:K07404
KEGG Reaction	R02035
KEGG Pathway	ko00030,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map01100,map01110,map01120,map01130,map01200
KEGG Module	M00004,M00006,M00008
Evalue	1.32e-15
EggNOG OGs	COG2706@1\|root,COG2706@2\|Bacteria,4NE87@976\|Bacteroidetes,1I0Q4@117743\|Flavobacteriia,1F9FD@104264\|Cellulophaga
EC	3.1.1.31
Description	Lactonase, 7-bladed beta-propeller
COG category	G
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2907	Gchil2907	Gracilaria chilensis NLEC103_M9 male	gene	tig00000106_pilon 177936..179117 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2907.t1.start1	Gchil2907.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000106_pilon 177936..177938 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2907.t1.CDS1	Gchil2907.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000106_pilon 177936..179117 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2907.t1.exon1	Gchil2907.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000106_pilon 177936..179117 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2907.t1.stop1	Gchil2907.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000106_pilon 179115..179117 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2907.t1	Gchil2907.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000106_pilon 177936..179117 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000106_pilon:177936..179117+
coding sequence from alignment at tig00000106_pilon:177936..179117+

mRNA sequence

>Gchil2907.t1 ID=Gchil2907.t1|Name=Gchil2907.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=394bp
MNTVARAVTLFALLELSVGFYPPGCPSTFSLALGSYTNQAESKGEGVYIV
DYEKDELSLTQVLNTSITNENPSYVAVKEPFLYVANENFSPLFQYNGSVT
RILLSKDRQPISSTFAKATGFFTTHVSVHSGSIVLGANFLSSFDTYISRG
DTFTRADSFIVPDELASEIATNMTLGPMFGQPHPHIVLPYGEGVVVCDAG
SNLVWYFGLNFCTGKLSLISKVPFRITDGPRHAVKHTKSDMLYVLNEVSV
SIGVLKPSRDGLSLRYMIDVLDNKPDDVTLAAIRTTRDGRFLYVSVRYPG
TTDGAVVGYRLQRRTGDILYKIGMWSTFGVHPRDFNLIEGVRFKGRCTSF
IAAVHRDSDSLVLIEREKKWGTLRPYPAMTLNVSTPTSVVPLW*

spliced messenger RNA

>Gchil2907.t1 ID=Gchil2907.t1|Name=Gchil2907.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1182bp|location=Sequence derived from alignment at tig00000106_pilon:177936..179117+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACACCGTCGCACGTGCCGTAACCTTATTCGCTTTGCTTGAACTATC
TGTCGGCTTCTATCCCCCAGGATGTCCTTCGACCTTCAGCCTTGCTCTGG
GAAGCTATACGAATCAAGCGGAATCGAAGGGTGAAGGTGTTTATATTGTC
GATTATGAAAAAGACGAGCTGAGTCTAACTCAAGTACTAAACACTTCCAT
CACGAATGAAAATCCGTCTTATGTGGCTGTGAAAGAACCGTTTCTCTACG
TCGCCAACGAGAACTTCAGCCCGCTCTTTCAGTACAATGGATCAGTAACA
AGGATTCTTTTGTCGAAGGATAGACAGCCAATTTCATCTACGTTCGCAAA
AGCGACAGGTTTTTTCACGACTCATGTCAGTGTACATTCAGGAAGCATCG
TACTGGGTGCCAACTTCCTCAGCTCTTTTGACACATACATCAGCCGAGGA
GACACTTTCACGCGTGCTGATTCCTTTATCGTACCTGATGAACTTGCTTC
GGAAATAGCAACAAATATGACTTTGGGTCCTATGTTCGGCCAACCCCATC
CACATATTGTACTTCCCTACGGAGAAGGTGTAGTCGTTTGTGATGCAGGG
TCGAATCTAGTGTGGTACTTCGGTTTGAATTTCTGCACTGGAAAGCTTTC
GCTGATCAGCAAGGTACCATTCCGAATCACAGATGGACCTCGCCATGCTG
TAAAACACACCAAGTCCGATATGCTTTATGTTCTGAACGAAGTTTCCGTG
TCCATTGGAGTATTGAAGCCATCAAGAGACGGGTTGTCTCTCAGGTACAT
GATAGATGTTCTTGACAACAAACCCGATGACGTAACCCTTGCAGCAATAC
GTACGACAAGAGATGGACGCTTTTTATACGTTTCAGTGAGGTATCCTGGT
ACCACTGACGGAGCGGTTGTGGGATATAGACTTCAACGTCGTACTGGTGA
TATCTTGTACAAGATCGGAATGTGGAGCACGTTTGGAGTACATCCAAGAG
ATTTTAATCTCATCGAAGGCGTAAGGTTCAAGGGAAGATGTACGAGTTTT
ATTGCTGCGGTTCACCGGGATTCTGATAGTCTTGTTCTCATCGAAAGAGA
GAAAAAATGGGGGACTTTGAGGCCATACCCGGCAATGACTCTGAATGTAT
CGACTCCGACTTCAGTGGTTCCGTTATGGTGA

protein sequence of Gchil2907.t1

>Gchil2907.t1 ID=Gchil2907.t1|Name=Gchil2907.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=394bp
MNTVARAVTLFALLELSVGFYPPGCPSTFSLALGSYTNQAESKGEGVYIV
DYEKDELSLTQVLNTSITNENPSYVAVKEPFLYVANENFSPLFQYNGSVT
RILLSKDRQPISSTFAKATGFFTTHVSVHSGSIVLGANFLSSFDTYISRG
DTFTRADSFIVPDELASEIATNMTLGPMFGQPHPHIVLPYGEGVVVCDAG
SNLVWYFGLNFCTGKLSLISKVPFRITDGPRHAVKHTKSDMLYVLNEVSV
SIGVLKPSRDGLSLRYMIDVLDNKPDDVTLAAIRTTRDGRFLYVSVRYPG
TTDGAVVGYRLQRRTGDILYKIGMWSTFGVHPRDFNLIEGVRFKGRCTSF
IAAVHRDSDSLVLIEREKKWGTLRPYPAMTLNVSTPTSVVPLW*

mRNA from alignment at tig00000106_pilon:177936..179117+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2907.t1 ID=Gchil2907.t1|Name=Gchil2907.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1182bp|location=Sequence derived from alignment at tig00000106_pilon:177936..179117+ (Gracilaria chilensis NLEC103_M9 male)
ATGAACACCGTCGCACGTGCCGTAACCTTATTCGCTTTGCTTGAACTATC
TGTCGGCTTCTATCCCCCAGGATGTCCTTCGACCTTCAGCCTTGCTCTGG
GAAGCTATACGAATCAAGCGGAATCGAAGGGTGAAGGTGTTTATATTGTC
GATTATGAAAAAGACGAGCTGAGTCTAACTCAAGTACTAAACACTTCCAT
CACGAATGAAAATCCGTCTTATGTGGCTGTGAAAGAACCGTTTCTCTACG
TCGCCAACGAGAACTTCAGCCCGCTCTTTCAGTACAATGGATCAGTAACA
AGGATTCTTTTGTCGAAGGATAGACAGCCAATTTCATCTACGTTCGCAAA
AGCGACAGGTTTTTTCACGACTCATGTCAGTGTACATTCAGGAAGCATCG
TACTGGGTGCCAACTTCCTCAGCTCTTTTGACACATACATCAGCCGAGGA
GACACTTTCACGCGTGCTGATTCCTTTATCGTACCTGATGAACTTGCTTC
GGAAATAGCAACAAATATGACTTTGGGTCCTATGTTCGGCCAACCCCATC
CACATATTGTACTTCCCTACGGAGAAGGTGTAGTCGTTTGTGATGCAGGG
TCGAATCTAGTGTGGTACTTCGGTTTGAATTTCTGCACTGGAAAGCTTTC
GCTGATCAGCAAGGTACCATTCCGAATCACAGATGGACCTCGCCATGCTG
TAAAACACACCAAGTCCGATATGCTTTATGTTCTGAACGAAGTTTCCGTG
TCCATTGGAGTATTGAAGCCATCAAGAGACGGGTTGTCTCTCAGGTACAT
GATAGATGTTCTTGACAACAAACCCGATGACGTAACCCTTGCAGCAATAC
GTACGACAAGAGATGGACGCTTTTTATACGTTTCAGTGAGGTATCCTGGT
ACCACTGACGGAGCGGTTGTGGGATATAGACTTCAACGTCGTACTGGTGA
TATCTTGTACAAGATCGGAATGTGGAGCACGTTTGGAGTACATCCAAGAG
ATTTTAATCTCATCGAAGGCGTAAGGTTCAAGGGAAGATGTACGAGTTTT
ATTGCTGCGGTTCACCGGGATTCTGATAGTCTTGTTCTCATCGAAAGAGA
GAAAAAATGGGGGACTTTGAGGCCATACCCGGCAATGACTCTGAATGTAT
CGACTCCGACTTCAGTGGTTCCGTTATGGTGA

Coding sequence (CDS) from alignment at tig00000106_pilon:177936..179117+

>Gchil2907.t1 ID=Gchil2907.t1|Name=Gchil2907.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1182bp|location=Sequence derived from alignment at tig00000106_pilon:177936..179117+ (Gracilaria chilensis NLEC103_M9 male)
ATGAACACCGTCGCACGTGCCGTAACCTTATTCGCTTTGCTTGAACTATC
TGTCGGCTTCTATCCCCCAGGATGTCCTTCGACCTTCAGCCTTGCTCTGG
GAAGCTATACGAATCAAGCGGAATCGAAGGGTGAAGGTGTTTATATTGTC
GATTATGAAAAAGACGAGCTGAGTCTAACTCAAGTACTAAACACTTCCAT
CACGAATGAAAATCCGTCTTATGTGGCTGTGAAAGAACCGTTTCTCTACG
TCGCCAACGAGAACTTCAGCCCGCTCTTTCAGTACAATGGATCAGTAACA
AGGATTCTTTTGTCGAAGGATAGACAGCCAATTTCATCTACGTTCGCAAA
AGCGACAGGTTTTTTCACGACTCATGTCAGTGTACATTCAGGAAGCATCG
TACTGGGTGCCAACTTCCTCAGCTCTTTTGACACATACATCAGCCGAGGA
GACACTTTCACGCGTGCTGATTCCTTTATCGTACCTGATGAACTTGCTTC
GGAAATAGCAACAAATATGACTTTGGGTCCTATGTTCGGCCAACCCCATC
CACATATTGTACTTCCCTACGGAGAAGGTGTAGTCGTTTGTGATGCAGGG
TCGAATCTAGTGTGGTACTTCGGTTTGAATTTCTGCACTGGAAAGCTTTC
GCTGATCAGCAAGGTACCATTCCGAATCACAGATGGACCTCGCCATGCTG
TAAAACACACCAAGTCCGATATGCTTTATGTTCTGAACGAAGTTTCCGTG
TCCATTGGAGTATTGAAGCCATCAAGAGACGGGTTGTCTCTCAGGTACAT
GATAGATGTTCTTGACAACAAACCCGATGACGTAACCCTTGCAGCAATAC
GTACGACAAGAGATGGACGCTTTTTATACGTTTCAGTGAGGTATCCTGGT
ACCACTGACGGAGCGGTTGTGGGATATAGACTTCAACGTCGTACTGGTGA
TATCTTGTACAAGATCGGAATGTGGAGCACGTTTGGAGTACATCCAAGAG
ATTTTAATCTCATCGAAGGCGTAAGGTTCAAGGGAAGATGTACGAGTTTT
ATTGCTGCGGTTCACCGGGATTCTGATAGTCTTGTTCTCATCGAAAGAGA
GAAAAAATGGGGGACTTTGAGGCCATACCCGGCAATGACTCTGAATGTAT
CGACTCCGACTTCAGTGGTTCCGTTATGGTGA