Gchil2899.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2899.t1
Unique Name	Gchil2899.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	355

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000106_pilon	contig	tig00000106_pilon:62654..63718 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705718.1
PFAMs	RNase_Zc3h12a
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K18668
Evalue	5.29e-35
EggNOG OGs	2E7Q9@1\|root,2SE9D@2759\|Eukaryota
Description	Zc3h12a-like Ribonuclease NYN domain
COG category	S
BRITE	ko00000,ko01000,ko03019

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2899	Gchil2899	Gracilaria chilensis NLEC103_M9 male	gene	tig00000106_pilon 62654..63718 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2899.t1.start1	Gchil2899.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000106_pilon 62654..62656 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2899.t1.CDS1	Gchil2899.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000106_pilon 62654..63718 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2899.t1.exon1	Gchil2899.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000106_pilon 62654..63718 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2899.t1.stop1	Gchil2899.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000106_pilon 63716..63718 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2899.t1	Gchil2899.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000106_pilon 62654..63718 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000106_pilon:62654..63718+
coding sequence from alignment at tig00000106_pilon:62654..63718+

mRNA sequence

>Gchil2899.t1 ID=Gchil2899.t1|Name=Gchil2899.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=355bp
MADAMDVDTVDFSPHTPKPDVVTPVNPDHIVDAAFALLRTHLYNFIIRQL
TVSVGEEFLSDVAPPPQSSLLHLLRFVLDKWISTFADSKLRHHKPTIERF
IALVKSVCPTDVVLVTSSTTAKEALQIAECLLIDFHPAASARVSALGRAL
HSNSSCTPVHINPKPVATVNVSQKSTPQQQFPAVTPVQHLSQHLANRILP
VILDGSNIAWRHGQSKFSIRGVVLALHYFSERNHPVVLFLPEARLRNTSQ
DSEYALVKSLRGTPNLVLTPDDDYDDAYICHFARANCALIVSNDAFKDHV
YQASAVSEQAAKEWKTWFSACRVSFTFRGDQFLPNPAFNYDRAVQVAMRL
VVPL*

spliced messenger RNA

>Gchil2899.t1 ID=Gchil2899.t1|Name=Gchil2899.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1065bp|location=Sequence derived from alignment at tig00000106_pilon:62654..63718+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGACGCCATGGACGTTGACACAGTCGACTTTTCGCCTCACACCCC
TAAACCAGACGTCGTCACACCCGTCAATCCTGACCACATCGTCGATGCTG
CCTTTGCTCTCCTTCGCACCCACCTGTACAATTTCATCATTCGCCAACTC
ACTGTTTCGGTGGGCGAGGAGTTTCTCTCCGACGTAGCCCCACCTCCCCA
GTCTTCTCTTTTGCATTTGTTGCGTTTCGTTCTTGACAAATGGATTTCCA
CGTTTGCCGATTCTAAACTGCGTCATCACAAGCCCACTATTGAGCGTTTT
ATTGCGCTTGTCAAATCCGTCTGTCCTACGGACGTTGTTCTTGTGACCTC
TTCCACTACTGCAAAAGAAGCGCTTCAAATAGCAGAATGTTTGCTCATCG
ACTTTCACCCTGCTGCTTCGGCCCGCGTTTCTGCCTTGGGAAGAGCGCTG
CATTCAAATTCTTCATGTACACCTGTTCATATCAATCCCAAGCCTGTTGC
AACAGTCAATGTTTCTCAAAAATCAACCCCACAACAACAGTTTCCCGCCG
TAACTCCCGTGCAGCATCTCTCTCAGCATCTAGCAAACCGAATCCTTCCA
GTCATACTTGATGGATCCAATATTGCCTGGCGTCACGGCCAATCTAAATT
CTCAATACGTGGTGTCGTCCTAGCTTTGCACTACTTTTCAGAACGAAACC
ACCCTGTAGTTCTCTTTCTTCCCGAAGCTCGATTGCGAAACACTTCACAA
GATAGCGAATATGCTCTTGTAAAATCATTACGCGGTACTCCAAATCTCGT
CCTGACGCCCGATGATGACTATGACGATGCCTATATTTGTCATTTTGCAC
GAGCGAATTGTGCACTTATTGTCAGCAATGATGCATTCAAGGATCATGTG
TATCAGGCGTCCGCGGTGTCAGAGCAGGCTGCAAAGGAATGGAAGACGTG
GTTTTCCGCTTGTCGAGTTTCGTTCACATTTCGAGGTGATCAATTCCTGC
CGAATCCGGCGTTTAATTACGACCGAGCGGTTCAAGTTGCTATGCGTCTT
GTTGTTCCGCTCTGA

protein sequence of Gchil2899.t1

>Gchil2899.t1 ID=Gchil2899.t1|Name=Gchil2899.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=355bp
MADAMDVDTVDFSPHTPKPDVVTPVNPDHIVDAAFALLRTHLYNFIIRQL
TVSVGEEFLSDVAPPPQSSLLHLLRFVLDKWISTFADSKLRHHKPTIERF
IALVKSVCPTDVVLVTSSTTAKEALQIAECLLIDFHPAASARVSALGRAL
HSNSSCTPVHINPKPVATVNVSQKSTPQQQFPAVTPVQHLSQHLANRILP
VILDGSNIAWRHGQSKFSIRGVVLALHYFSERNHPVVLFLPEARLRNTSQ
DSEYALVKSLRGTPNLVLTPDDDYDDAYICHFARANCALIVSNDAFKDHV
YQASAVSEQAAKEWKTWFSACRVSFTFRGDQFLPNPAFNYDRAVQVAMRL
VVPL*

mRNA from alignment at tig00000106_pilon:62654..63718+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2899.t1 ID=Gchil2899.t1|Name=Gchil2899.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1065bp|location=Sequence derived from alignment at tig00000106_pilon:62654..63718+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGACGCCATGGACGTTGACACAGTCGACTTTTCGCCTCACACCCC
TAAACCAGACGTCGTCACACCCGTCAATCCTGACCACATCGTCGATGCTG
CCTTTGCTCTCCTTCGCACCCACCTGTACAATTTCATCATTCGCCAACTC
ACTGTTTCGGTGGGCGAGGAGTTTCTCTCCGACGTAGCCCCACCTCCCCA
GTCTTCTCTTTTGCATTTGTTGCGTTTCGTTCTTGACAAATGGATTTCCA
CGTTTGCCGATTCTAAACTGCGTCATCACAAGCCCACTATTGAGCGTTTT
ATTGCGCTTGTCAAATCCGTCTGTCCTACGGACGTTGTTCTTGTGACCTC
TTCCACTACTGCAAAAGAAGCGCTTCAAATAGCAGAATGTTTGCTCATCG
ACTTTCACCCTGCTGCTTCGGCCCGCGTTTCTGCCTTGGGAAGAGCGCTG
CATTCAAATTCTTCATGTACACCTGTTCATATCAATCCCAAGCCTGTTGC
AACAGTCAATGTTTCTCAAAAATCAACCCCACAACAACAGTTTCCCGCCG
TAACTCCCGTGCAGCATCTCTCTCAGCATCTAGCAAACCGAATCCTTCCA
GTCATACTTGATGGATCCAATATTGCCTGGCGTCACGGCCAATCTAAATT
CTCAATACGTGGTGTCGTCCTAGCTTTGCACTACTTTTCAGAACGAAACC
ACCCTGTAGTTCTCTTTCTTCCCGAAGCTCGATTGCGAAACACTTCACAA
GATAGCGAATATGCTCTTGTAAAATCATTACGCGGTACTCCAAATCTCGT
CCTGACGCCCGATGATGACTATGACGATGCCTATATTTGTCATTTTGCAC
GAGCGAATTGTGCACTTATTGTCAGCAATGATGCATTCAAGGATCATGTG
TATCAGGCGTCCGCGGTGTCAGAGCAGGCTGCAAAGGAATGGAAGACGTG
GTTTTCCGCTTGTCGAGTTTCGTTCACATTTCGAGGTGATCAATTCCTGC
CGAATCCGGCGTTTAATTACGACCGAGCGGTTCAAGTTGCTATGCGTCTT
GTTGTTCCGCTCTGA

Coding sequence (CDS) from alignment at tig00000106_pilon:62654..63718+

>Gchil2899.t1 ID=Gchil2899.t1|Name=Gchil2899.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1065bp|location=Sequence derived from alignment at tig00000106_pilon:62654..63718+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGACGCCATGGACGTTGACACAGTCGACTTTTCGCCTCACACCCC
TAAACCAGACGTCGTCACACCCGTCAATCCTGACCACATCGTCGATGCTG
CCTTTGCTCTCCTTCGCACCCACCTGTACAATTTCATCATTCGCCAACTC
ACTGTTTCGGTGGGCGAGGAGTTTCTCTCCGACGTAGCCCCACCTCCCCA
GTCTTCTCTTTTGCATTTGTTGCGTTTCGTTCTTGACAAATGGATTTCCA
CGTTTGCCGATTCTAAACTGCGTCATCACAAGCCCACTATTGAGCGTTTT
ATTGCGCTTGTCAAATCCGTCTGTCCTACGGACGTTGTTCTTGTGACCTC
TTCCACTACTGCAAAAGAAGCGCTTCAAATAGCAGAATGTTTGCTCATCG
ACTTTCACCCTGCTGCTTCGGCCCGCGTTTCTGCCTTGGGAAGAGCGCTG
CATTCAAATTCTTCATGTACACCTGTTCATATCAATCCCAAGCCTGTTGC
AACAGTCAATGTTTCTCAAAAATCAACCCCACAACAACAGTTTCCCGCCG
TAACTCCCGTGCAGCATCTCTCTCAGCATCTAGCAAACCGAATCCTTCCA
GTCATACTTGATGGATCCAATATTGCCTGGCGTCACGGCCAATCTAAATT
CTCAATACGTGGTGTCGTCCTAGCTTTGCACTACTTTTCAGAACGAAACC
ACCCTGTAGTTCTCTTTCTTCCCGAAGCTCGATTGCGAAACACTTCACAA
GATAGCGAATATGCTCTTGTAAAATCATTACGCGGTACTCCAAATCTCGT
CCTGACGCCCGATGATGACTATGACGATGCCTATATTTGTCATTTTGCAC
GAGCGAATTGTGCACTTATTGTCAGCAATGATGCATTCAAGGATCATGTG
TATCAGGCGTCCGCGGTGTCAGAGCAGGCTGCAAAGGAATGGAAGACGTG
GTTTTCCGCTTGTCGAGTTTCGTTCACATTTCGAGGTGATCAATTCCTGC
CGAATCCGGCGTTTAATTACGACCGAGCGGTTCAAGTTGCTATGCGTCTT
GTTGTTCCGCTCTGA