Gchil2898.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2898.t1
Unique NameGchil2898.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length830
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:59642..62131 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705783.1
PFAMsExo_endo_phos,RhoGAP
Max annot lvl2759|Eukaryota
KEGG rclassRC00078
KEGG koko:K01099,ko:K20279
KEGG ReactionR04404,R09827
KEGG Pathwayko00562,ko01100,ko04070,map00562,map01100,map04070
Evalue3.55e-103
EggNOG OGsCOG5411@1|root,KOG0565@2759|Eukaryota
EC3.1.3.36
Descriptionphosphatidylinositol dephosphorylation
COG categoryT
BRITEko00000,ko00001,ko01000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2898Gchil2898Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 59642..62131 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2898.t1.stop1Gchil2898.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 59642..59644 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2898.t1.CDS1Gchil2898.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 59642..62131 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2898.t1.exon1Gchil2898.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 59642..62131 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2898.t1.start1Gchil2898.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 62129..62131 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2898.t1Gchil2898.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 59642..62131 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2898.t1 ID=Gchil2898.t1|Name=Gchil2898.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=830bp
MNAEALNAALASKRSRWYDEYISERRHEFTTDKELNMFAGTWNVNGRSPQ
QNLNLDPWLFPSQQSVRRPFDVYMLGLQEVQSLTGMDAVRSDTIRGVEWR
KTIHQLLDDDYDIVAEKQLVGIMILVFVRKNHSAFLSDVKISTAATGFLN
AVGNKGAVAVRFKLYDRTIACVSCHLTAHTGNVERRNQDFRDVVRKAVFN
QPDLLDDPPSVSTSSLPESALSESRPSWNRYSSDSRNLRSAPIAYPPNTS
TNSAAGAWLENMKYVRAIAASAIAELGNGSTTTLNHVSMSSGILAHDVVF
WLGDLNYRIDAPLERVMEWIRDKNWMALRNADELQYQMKQNEIFKGFKEG
LIQFPPTYKLERFSDKYATDENGDVKRTPAYTDRILWKPGTDEKGNELQV
RLKCYDCSKVHSSDHRPVYAHFGMRFGVENALRKKKIEAEVHAVLARQIE
RYLPKVLIDPCPVPMGKVVFDDLKNSVVLLRNMSEHGAAHVRIEAPKHPP
EWLRFDSSRWQNVVIPPGKSVELELSARVGHENGLATRVCKEGCILKTEL
TVQIEPGRERRTIEISGHYSPTTLGLSLEMLSMLSDPVRSLKYPKHLDFG
FSDDRRSFDNELEDRSHPDALPLAVPKEIWLLVDALHRVHEGDTETYMHR
FPDLFLQKGNDAQIDDILSLIDNGKSIPDDFDGHDVAGCLLKVLSNLEDT
VIPRSFYRRVLEVGMREDPLAVYGTVGLLPPLNGNIFWYIIGFLCQHRAF
KKETNEAVQIAKLFGDILLPRSVSTVQNESRGRTSFILTAIKFCQRLSPP
RHKTVIDLKRPTSHPRKLRARQSVLLRSD*
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spliced messenger RNA

>Gchil2898.t1 ID=Gchil2898.t1|Name=Gchil2898.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2490bp|location=Sequence derived from alignment at tig00000106_pilon:59642..62131- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGCTGAAGCGCTCAATGCCGCGCTGGCCAGTAAACGCAGCAGATG
GTACGATGAGTATATTTCCGAACGTCGTCATGAATTCACAACCGACAAAG
AGCTTAACATGTTTGCCGGAACATGGAACGTAAACGGTCGCTCGCCTCAA
CAAAACTTAAACCTCGACCCCTGGTTATTTCCGTCACAGCAATCTGTCAG
ACGTCCCTTTGATGTTTATATGCTTGGTCTGCAAGAAGTGCAGTCCTTAA
CAGGCATGGATGCAGTTCGTTCAGACACTATCAGAGGCGTCGAATGGCGA
AAAACAATTCATCAACTACTAGATGACGACTACGATATAGTTGCGGAGAA
ACAGCTCGTCGGCATTATGATTTTAGTATTTGTGCGAAAGAACCATTCCG
CTTTCCTTTCCGACGTCAAGATATCAACCGCTGCTACTGGCTTTCTAAAT
GCCGTCGGTAACAAAGGTGCAGTAGCCGTTCGTTTTAAGCTGTATGACCG
AACCATTGCATGCGTATCTTGTCATTTGACGGCACACACGGGCAACGTAG
AGCGCCGCAATCAGGATTTTAGAGATGTGGTCAGAAAAGCCGTTTTCAAT
CAACCGGATTTACTCGACGATCCTCCTTCCGTGTCCACATCATCGTTACC
AGAATCCGCTTTGTCAGAATCACGGCCAAGTTGGAACAGGTATTCTTCCG
ATAGCAGGAACTTGCGCTCGGCGCCCATCGCGTATCCCCCTAACACGAGC
ACCAACAGCGCTGCCGGCGCATGGCTCGAGAACATGAAATACGTTCGTGC
CATCGCCGCATCCGCTATTGCAGAGCTAGGAAACGGTTCGACCACTACTT
TGAACCACGTTTCCATGTCATCCGGAATTCTTGCCCATGACGTTGTTTTC
TGGCTGGGTGACTTGAACTATAGAATTGATGCCCCTCTGGAGCGAGTAAT
GGAGTGGATCAGAGATAAAAATTGGATGGCCTTGCGAAATGCGGACGAGC
TCCAGTATCAAATGAAACAAAATGAAATCTTCAAAGGTTTCAAAGAAGGA
CTCATACAATTCCCACCAACCTACAAGCTCGAAAGATTCAGCGATAAGTA
CGCCACTGATGAAAACGGCGATGTGAAACGGACTCCAGCGTACACAGATC
GCATTTTGTGGAAGCCCGGAACAGATGAAAAAGGAAATGAACTCCAGGTG
AGGCTTAAATGTTATGATTGCTCAAAGGTGCATTCATCCGATCATCGTCC
GGTGTACGCTCATTTTGGAATGAGGTTCGGAGTGGAAAATGCTCTGCGGA
AGAAGAAAATCGAAGCCGAGGTACACGCAGTCTTAGCCCGCCAGATAGAG
AGATATTTGCCGAAAGTGCTCATTGATCCGTGCCCTGTTCCAATGGGCAA
AGTTGTGTTCGATGATCTAAAAAATTCCGTAGTCCTGCTGAGAAACATGT
CAGAACATGGGGCTGCGCATGTCCGGATTGAAGCACCAAAGCACCCACCT
GAATGGCTACGTTTTGATTCGTCTCGGTGGCAAAACGTTGTTATACCCCC
CGGCAAATCCGTGGAACTGGAATTATCTGCTCGAGTTGGCCATGAAAACG
GTCTGGCAACTCGAGTTTGCAAAGAGGGCTGTATATTAAAAACAGAGCTC
ACGGTGCAGATCGAGCCTGGGCGGGAGCGTAGAACGATAGAAATAAGTGG
GCATTACTCGCCTACGACGCTCGGTCTTTCTCTTGAAATGTTGTCAATGC
TCTCGGATCCTGTTCGCTCTTTGAAGTATCCAAAGCATTTGGATTTCGGC
TTCTCAGACGACCGGCGGTCCTTTGACAATGAACTAGAGGATAGAAGCCA
TCCTGACGCCCTTCCGTTGGCAGTACCGAAAGAAATCTGGCTGCTTGTAG
ATGCATTACATAGAGTCCACGAAGGTGACACAGAGACATACATGCACCGC
TTCCCCGATTTGTTTCTGCAGAAAGGAAATGACGCGCAGATAGATGACAT
TTTGTCTCTAATCGACAACGGGAAATCTATTCCAGATGATTTCGATGGTC
ATGATGTGGCAGGATGCCTGTTGAAAGTTTTGAGCAACCTGGAAGACACA
GTCATTCCCCGGTCATTTTACCGCCGAGTACTTGAGGTAGGCATGAGAGA
GGATCCACTGGCGGTTTATGGGACTGTGGGATTGTTACCGCCATTGAATG
GAAACATCTTTTGGTATATTATTGGTTTTCTTTGTCAGCATCGAGCCTTT
AAGAAGGAAACAAATGAGGCGGTACAAATCGCAAAACTTTTCGGTGATAT
ACTTCTCCCACGTTCAGTTTCCACTGTGCAAAACGAATCACGGGGAAGAA
CATCCTTCATTCTAACCGCGATTAAATTCTGCCAAAGACTAAGCCCACCG
AGACATAAAACCGTTATTGATCTCAAACGACCAACATCTCATCCAAGGAA
ACTTAGAGCGAGGCAGTCTGTATTGTTACGATCTGATTAA
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protein sequence of Gchil2898.t1

>Gchil2898.t1 ID=Gchil2898.t1|Name=Gchil2898.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=830bp
MNAEALNAALASKRSRWYDEYISERRHEFTTDKELNMFAGTWNVNGRSPQ
QNLNLDPWLFPSQQSVRRPFDVYMLGLQEVQSLTGMDAVRSDTIRGVEWR
KTIHQLLDDDYDIVAEKQLVGIMILVFVRKNHSAFLSDVKISTAATGFLN
AVGNKGAVAVRFKLYDRTIACVSCHLTAHTGNVERRNQDFRDVVRKAVFN
QPDLLDDPPSVSTSSLPESALSESRPSWNRYSSDSRNLRSAPIAYPPNTS
TNSAAGAWLENMKYVRAIAASAIAELGNGSTTTLNHVSMSSGILAHDVVF
WLGDLNYRIDAPLERVMEWIRDKNWMALRNADELQYQMKQNEIFKGFKEG
LIQFPPTYKLERFSDKYATDENGDVKRTPAYTDRILWKPGTDEKGNELQV
RLKCYDCSKVHSSDHRPVYAHFGMRFGVENALRKKKIEAEVHAVLARQIE
RYLPKVLIDPCPVPMGKVVFDDLKNSVVLLRNMSEHGAAHVRIEAPKHPP
EWLRFDSSRWQNVVIPPGKSVELELSARVGHENGLATRVCKEGCILKTEL
TVQIEPGRERRTIEISGHYSPTTLGLSLEMLSMLSDPVRSLKYPKHLDFG
FSDDRRSFDNELEDRSHPDALPLAVPKEIWLLVDALHRVHEGDTETYMHR
FPDLFLQKGNDAQIDDILSLIDNGKSIPDDFDGHDVAGCLLKVLSNLEDT
VIPRSFYRRVLEVGMREDPLAVYGTVGLLPPLNGNIFWYIIGFLCQHRAF
KKETNEAVQIAKLFGDILLPRSVSTVQNESRGRTSFILTAIKFCQRLSPP
RHKTVIDLKRPTSHPRKLRARQSVLLRSD*
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mRNA from alignment at tig00000106_pilon:59642..62131-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2898.t1 ID=Gchil2898.t1|Name=Gchil2898.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2490bp|location=Sequence derived from alignment at tig00000106_pilon:59642..62131- (Gracilaria chilensis NLEC103_M9 male)
ATGAACGCTGAAGCGCTCAATGCCGCGCTGGCCAGTAAACGCAGCAGATG GTACGATGAGTATATTTCCGAACGTCGTCATGAATTCACAACCGACAAAG AGCTTAACATGTTTGCCGGAACATGGAACGTAAACGGTCGCTCGCCTCAA CAAAACTTAAACCTCGACCCCTGGTTATTTCCGTCACAGCAATCTGTCAG ACGTCCCTTTGATGTTTATATGCTTGGTCTGCAAGAAGTGCAGTCCTTAA CAGGCATGGATGCAGTTCGTTCAGACACTATCAGAGGCGTCGAATGGCGA AAAACAATTCATCAACTACTAGATGACGACTACGATATAGTTGCGGAGAA ACAGCTCGTCGGCATTATGATTTTAGTATTTGTGCGAAAGAACCATTCCG CTTTCCTTTCCGACGTCAAGATATCAACCGCTGCTACTGGCTTTCTAAAT GCCGTCGGTAACAAAGGTGCAGTAGCCGTTCGTTTTAAGCTGTATGACCG AACCATTGCATGCGTATCTTGTCATTTGACGGCACACACGGGCAACGTAG AGCGCCGCAATCAGGATTTTAGAGATGTGGTCAGAAAAGCCGTTTTCAAT CAACCGGATTTACTCGACGATCCTCCTTCCGTGTCCACATCATCGTTACC AGAATCCGCTTTGTCAGAATCACGGCCAAGTTGGAACAGGTATTCTTCCG ATAGCAGGAACTTGCGCTCGGCGCCCATCGCGTATCCCCCTAACACGAGC ACCAACAGCGCTGCCGGCGCATGGCTCGAGAACATGAAATACGTTCGTGC CATCGCCGCATCCGCTATTGCAGAGCTAGGAAACGGTTCGACCACTACTT TGAACCACGTTTCCATGTCATCCGGAATTCTTGCCCATGACGTTGTTTTC TGGCTGGGTGACTTGAACTATAGAATTGATGCCCCTCTGGAGCGAGTAAT GGAGTGGATCAGAGATAAAAATTGGATGGCCTTGCGAAATGCGGACGAGC TCCAGTATCAAATGAAACAAAATGAAATCTTCAAAGGTTTCAAAGAAGGA CTCATACAATTCCCACCAACCTACAAGCTCGAAAGATTCAGCGATAAGTA CGCCACTGATGAAAACGGCGATGTGAAACGGACTCCAGCGTACACAGATC GCATTTTGTGGAAGCCCGGAACAGATGAAAAAGGAAATGAACTCCAGGTG AGGCTTAAATGTTATGATTGCTCAAAGGTGCATTCATCCGATCATCGTCC GGTGTACGCTCATTTTGGAATGAGGTTCGGAGTGGAAAATGCTCTGCGGA AGAAGAAAATCGAAGCCGAGGTACACGCAGTCTTAGCCCGCCAGATAGAG AGATATTTGCCGAAAGTGCTCATTGATCCGTGCCCTGTTCCAATGGGCAA AGTTGTGTTCGATGATCTAAAAAATTCCGTAGTCCTGCTGAGAAACATGT CAGAACATGGGGCTGCGCATGTCCGGATTGAAGCACCAAAGCACCCACCT GAATGGCTACGTTTTGATTCGTCTCGGTGGCAAAACGTTGTTATACCCCC CGGCAAATCCGTGGAACTGGAATTATCTGCTCGAGTTGGCCATGAAAACG GTCTGGCAACTCGAGTTTGCAAAGAGGGCTGTATATTAAAAACAGAGCTC ACGGTGCAGATCGAGCCTGGGCGGGAGCGTAGAACGATAGAAATAAGTGG GCATTACTCGCCTACGACGCTCGGTCTTTCTCTTGAAATGTTGTCAATGC TCTCGGATCCTGTTCGCTCTTTGAAGTATCCAAAGCATTTGGATTTCGGC TTCTCAGACGACCGGCGGTCCTTTGACAATGAACTAGAGGATAGAAGCCA TCCTGACGCCCTTCCGTTGGCAGTACCGAAAGAAATCTGGCTGCTTGTAG ATGCATTACATAGAGTCCACGAAGGTGACACAGAGACATACATGCACCGC TTCCCCGATTTGTTTCTGCAGAAAGGAAATGACGCGCAGATAGATGACAT TTTGTCTCTAATCGACAACGGGAAATCTATTCCAGATGATTTCGATGGTC ATGATGTGGCAGGATGCCTGTTGAAAGTTTTGAGCAACCTGGAAGACACA GTCATTCCCCGGTCATTTTACCGCCGAGTACTTGAGGTAGGCATGAGAGA GGATCCACTGGCGGTTTATGGGACTGTGGGATTGTTACCGCCATTGAATG GAAACATCTTTTGGTATATTATTGGTTTTCTTTGTCAGCATCGAGCCTTT AAGAAGGAAACAAATGAGGCGGTACAAATCGCAAAACTTTTCGGTGATAT ACTTCTCCCACGTTCAGTTTCCACTGTGCAAAACGAATCACGGGGAAGAA CATCCTTCATTCTAACCGCGATTAAATTCTGCCAAAGACTAAGCCCACCG AGACATAAAACCGTTATTGATCTCAAACGACCAACATCTCATCCAAGGAA ACTTAGAGCGAGGCAGTCTGTATTGTTACGATCTGATTAA
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Coding sequence (CDS) from alignment at tig00000106_pilon:59642..62131-

>Gchil2898.t1 ID=Gchil2898.t1|Name=Gchil2898.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2490bp|location=Sequence derived from alignment at tig00000106_pilon:59642..62131- (Gracilaria chilensis NLEC103_M9 male)
ATGAACGCTGAAGCGCTCAATGCCGCGCTGGCCAGTAAACGCAGCAGATG
GTACGATGAGTATATTTCCGAACGTCGTCATGAATTCACAACCGACAAAG
AGCTTAACATGTTTGCCGGAACATGGAACGTAAACGGTCGCTCGCCTCAA
CAAAACTTAAACCTCGACCCCTGGTTATTTCCGTCACAGCAATCTGTCAG
ACGTCCCTTTGATGTTTATATGCTTGGTCTGCAAGAAGTGCAGTCCTTAA
CAGGCATGGATGCAGTTCGTTCAGACACTATCAGAGGCGTCGAATGGCGA
AAAACAATTCATCAACTACTAGATGACGACTACGATATAGTTGCGGAGAA
ACAGCTCGTCGGCATTATGATTTTAGTATTTGTGCGAAAGAACCATTCCG
CTTTCCTTTCCGACGTCAAGATATCAACCGCTGCTACTGGCTTTCTAAAT
GCCGTCGGTAACAAAGGTGCAGTAGCCGTTCGTTTTAAGCTGTATGACCG
AACCATTGCATGCGTATCTTGTCATTTGACGGCACACACGGGCAACGTAG
AGCGCCGCAATCAGGATTTTAGAGATGTGGTCAGAAAAGCCGTTTTCAAT
CAACCGGATTTACTCGACGATCCTCCTTCCGTGTCCACATCATCGTTACC
AGAATCCGCTTTGTCAGAATCACGGCCAAGTTGGAACAGGTATTCTTCCG
ATAGCAGGAACTTGCGCTCGGCGCCCATCGCGTATCCCCCTAACACGAGC
ACCAACAGCGCTGCCGGCGCATGGCTCGAGAACATGAAATACGTTCGTGC
CATCGCCGCATCCGCTATTGCAGAGCTAGGAAACGGTTCGACCACTACTT
TGAACCACGTTTCCATGTCATCCGGAATTCTTGCCCATGACGTTGTTTTC
TGGCTGGGTGACTTGAACTATAGAATTGATGCCCCTCTGGAGCGAGTAAT
GGAGTGGATCAGAGATAAAAATTGGATGGCCTTGCGAAATGCGGACGAGC
TCCAGTATCAAATGAAACAAAATGAAATCTTCAAAGGTTTCAAAGAAGGA
CTCATACAATTCCCACCAACCTACAAGCTCGAAAGATTCAGCGATAAGTA
CGCCACTGATGAAAACGGCGATGTGAAACGGACTCCAGCGTACACAGATC
GCATTTTGTGGAAGCCCGGAACAGATGAAAAAGGAAATGAACTCCAGGTG
AGGCTTAAATGTTATGATTGCTCAAAGGTGCATTCATCCGATCATCGTCC
GGTGTACGCTCATTTTGGAATGAGGTTCGGAGTGGAAAATGCTCTGCGGA
AGAAGAAAATCGAAGCCGAGGTACACGCAGTCTTAGCCCGCCAGATAGAG
AGATATTTGCCGAAAGTGCTCATTGATCCGTGCCCTGTTCCAATGGGCAA
AGTTGTGTTCGATGATCTAAAAAATTCCGTAGTCCTGCTGAGAAACATGT
CAGAACATGGGGCTGCGCATGTCCGGATTGAAGCACCAAAGCACCCACCT
GAATGGCTACGTTTTGATTCGTCTCGGTGGCAAAACGTTGTTATACCCCC
CGGCAAATCCGTGGAACTGGAATTATCTGCTCGAGTTGGCCATGAAAACG
GTCTGGCAACTCGAGTTTGCAAAGAGGGCTGTATATTAAAAACAGAGCTC
ACGGTGCAGATCGAGCCTGGGCGGGAGCGTAGAACGATAGAAATAAGTGG
GCATTACTCGCCTACGACGCTCGGTCTTTCTCTTGAAATGTTGTCAATGC
TCTCGGATCCTGTTCGCTCTTTGAAGTATCCAAAGCATTTGGATTTCGGC
TTCTCAGACGACCGGCGGTCCTTTGACAATGAACTAGAGGATAGAAGCCA
TCCTGACGCCCTTCCGTTGGCAGTACCGAAAGAAATCTGGCTGCTTGTAG
ATGCATTACATAGAGTCCACGAAGGTGACACAGAGACATACATGCACCGC
TTCCCCGATTTGTTTCTGCAGAAAGGAAATGACGCGCAGATAGATGACAT
TTTGTCTCTAATCGACAACGGGAAATCTATTCCAGATGATTTCGATGGTC
ATGATGTGGCAGGATGCCTGTTGAAAGTTTTGAGCAACCTGGAAGACACA
GTCATTCCCCGGTCATTTTACCGCCGAGTACTTGAGGTAGGCATGAGAGA
GGATCCACTGGCGGTTTATGGGACTGTGGGATTGTTACCGCCATTGAATG
GAAACATCTTTTGGTATATTATTGGTTTTCTTTGTCAGCATCGAGCCTTT
AAGAAGGAAACAAATGAGGCGGTACAAATCGCAAAACTTTTCGGTGATAT
ACTTCTCCCACGTTCAGTTTCCACTGTGCAAAACGAATCACGGGGAAGAA
CATCCTTCATTCTAACCGCGATTAAATTCTGCCAAAGACTAAGCCCACCG
AGACATAAAACCGTTATTGATCTCAAACGACCAACATCTCATCCAAGGAA
ACTTAGAGCGAGGCAGTCTGTATTGTTACGATCTGATTAA
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