Gchil2897.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2897.t1
Unique NameGchil2897.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length307
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:58411..59331 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMR389CT
PFAMsTsaE
Max annot lvl2759|Eukaryota
KEGG koko:K06925
Evalue5.37e-27
EggNOG OGsCOG0802@1|root,2S3MQ@2759|Eukaryota
DescriptionThreonylcarbamoyl adenosine biosynthesis protein TsaE
COG categoryS
BRITEko00000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2897Gchil2897Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 58411..59331 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2897.t1.start1Gchil2897.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 58411..58413 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2897.t1.CDS1Gchil2897.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 58411..59331 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2897.t1.exon1Gchil2897.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 58411..59331 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2897.t1.stop1Gchil2897.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 59329..59331 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2897.t1Gchil2897.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 58411..59331 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2897.t1 ID=Gchil2897.t1|Name=Gchil2897.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=307bp
MFEERLAWSFSTTSVFVRRSHCKARDEFASTLVNKLGLFKNDVHSHTQRV
SNLWPHFTLPRLLTLGFNQKSSRLLPFEEVNAITRHRRFSTATSIPISQI
NAPRVNYRLWLPTGIHTYKLGRLLGQDCRAGDVILLFGDLGVGKTALARG
YIHSAHSDESLEITSPTYLLLNSYPTPREHAHLGIPEILHMDLWRLEDAS
HRPIVDFKTAFDQAACLIEWPDRLHSITPRTRLEIHMSYINDAPGVEPSE
DDPWGFGIEDSDNLRQQCGRYVSLRPHGRKWSERVKTLIDDFTCVDEANR
VTLVND*
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spliced messenger RNA

>Gchil2897.t1 ID=Gchil2897.t1|Name=Gchil2897.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=921bp|location=Sequence derived from alignment at tig00000106_pilon:58411..59331+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTGAAGAACGCCTAGCTTGGAGTTTTTCAACGACATCGGTGTTTGT
GAGGCGAAGCCACTGCAAGGCTCGTGATGAATTCGCGTCTACGCTGGTCA
ACAAGCTCGGGCTGTTCAAGAACGACGTTCACTCCCATACTCAAAGGGTG
TCTAACCTATGGCCCCATTTCACGCTCCCGCGATTACTGACCTTAGGGTT
TAACCAAAAAAGCTCCCGACTGCTACCATTCGAGGAAGTAAATGCTATAA
CACGACACCGTCGCTTCAGCACAGCGACCTCCATACCGATCAGTCAGATT
AACGCCCCCCGTGTGAATTATAGATTGTGGCTGCCAACTGGGATTCATAC
ATACAAGCTTGGGCGTTTGCTTGGTCAAGATTGCAGAGCAGGTGATGTCA
TTCTTCTGTTCGGTGATTTGGGGGTGGGAAAGACGGCATTGGCGCGGGGA
TATATTCATTCTGCCCATTCCGACGAAAGTTTAGAGATAACCTCTCCTAC
GTATCTGCTACTTAACAGTTACCCGACCCCTCGCGAACATGCTCATCTGG
GAATTCCAGAAATCTTGCACATGGATTTATGGCGTCTAGAAGATGCGTCC
CACCGGCCTATCGTTGACTTCAAGACTGCATTCGATCAAGCTGCATGTTT
AATCGAGTGGCCTGATCGTTTACATTCTATCACACCCCGCACGCGTCTCG
AAATACATATGTCGTACATCAATGACGCCCCAGGTGTCGAGCCCTCAGAA
GATGATCCGTGGGGTTTTGGAATTGAGGATTCAGACAATTTGCGACAACA
ATGTGGGCGATATGTTTCACTTAGACCACATGGAAGGAAATGGTCTGAAA
GAGTGAAAACCCTGATTGACGACTTCACTTGCGTGGATGAAGCCAACCGC
GTTACTCTTGTTAACGATTGA
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protein sequence of Gchil2897.t1

>Gchil2897.t1 ID=Gchil2897.t1|Name=Gchil2897.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=307bp
MFEERLAWSFSTTSVFVRRSHCKARDEFASTLVNKLGLFKNDVHSHTQRV
SNLWPHFTLPRLLTLGFNQKSSRLLPFEEVNAITRHRRFSTATSIPISQI
NAPRVNYRLWLPTGIHTYKLGRLLGQDCRAGDVILLFGDLGVGKTALARG
YIHSAHSDESLEITSPTYLLLNSYPTPREHAHLGIPEILHMDLWRLEDAS
HRPIVDFKTAFDQAACLIEWPDRLHSITPRTRLEIHMSYINDAPGVEPSE
DDPWGFGIEDSDNLRQQCGRYVSLRPHGRKWSERVKTLIDDFTCVDEANR
VTLVND*
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mRNA from alignment at tig00000106_pilon:58411..59331+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2897.t1 ID=Gchil2897.t1|Name=Gchil2897.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=921bp|location=Sequence derived from alignment at tig00000106_pilon:58411..59331+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTTGAAGAACGCCTAGCTTGGAGTTTTTCAACGACATCGGTGTTTGT
GAGGCGAAGCCACTGCAAGGCTCGTGATGAATTCGCGTCTACGCTGGTCA
ACAAGCTCGGGCTGTTCAAGAACGACGTTCACTCCCATACTCAAAGGGTG
TCTAACCTATGGCCCCATTTCACGCTCCCGCGATTACTGACCTTAGGGTT
TAACCAAAAAAGCTCCCGACTGCTACCATTCGAGGAAGTAAATGCTATAA
CACGACACCGTCGCTTCAGCACAGCGACCTCCATACCGATCAGTCAGATT
AACGCCCCCCGTGTGAATTATAGATTGTGGCTGCCAACTGGGATTCATAC
ATACAAGCTTGGGCGTTTGCTTGGTCAAGATTGCAGAGCAGGTGATGTCA
TTCTTCTGTTCGGTGATTTGGGGGTGGGAAAGACGGCATTGGCGCGGGGA
TATATTCATTCTGCCCATTCCGACGAAAGTTTAGAGATAACCTCTCCTAC
GTATCTGCTACTTAACAGTTACCCGACCCCTCGCGAACATGCTCATCTGG
GAATTCCAGAAATCTTGCACATGGATTTATGGCGTCTAGAAGATGCGTCC
CACCGGCCTATCGTTGACTTCAAGACTGCATTCGATCAAGCTGCATGTTT
AATCGAGTGGCCTGATCGTTTACATTCTATCACACCCCGCACGCGTCTCG
AAATACATATGTCGTACATCAATGACGCCCCAGGTGTCGAGCCCTCAGAA
GATGATCCGTGGGGTTTTGGAATTGAGGATTCAGACAATTTGCGACAACA
ATGTGGGCGATATGTTTCACTTAGACCACATGGAAGGAAATGGTCTGAAA
GAGTGAAAACCCTGATTGACGACTTCACTTGCGTGGATGAAGCCAACCGC
GTTACTCTTGTTAACGATTGA
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Coding sequence (CDS) from alignment at tig00000106_pilon:58411..59331+

>Gchil2897.t1 ID=Gchil2897.t1|Name=Gchil2897.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=921bp|location=Sequence derived from alignment at tig00000106_pilon:58411..59331+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTTGAAGAACGCCTAGCTTGGAGTTTTTCAACGACATCGGTGTTTGT
GAGGCGAAGCCACTGCAAGGCTCGTGATGAATTCGCGTCTACGCTGGTCA
ACAAGCTCGGGCTGTTCAAGAACGACGTTCACTCCCATACTCAAAGGGTG
TCTAACCTATGGCCCCATTTCACGCTCCCGCGATTACTGACCTTAGGGTT
TAACCAAAAAAGCTCCCGACTGCTACCATTCGAGGAAGTAAATGCTATAA
CACGACACCGTCGCTTCAGCACAGCGACCTCCATACCGATCAGTCAGATT
AACGCCCCCCGTGTGAATTATAGATTGTGGCTGCCAACTGGGATTCATAC
ATACAAGCTTGGGCGTTTGCTTGGTCAAGATTGCAGAGCAGGTGATGTCA
TTCTTCTGTTCGGTGATTTGGGGGTGGGAAAGACGGCATTGGCGCGGGGA
TATATTCATTCTGCCCATTCCGACGAAAGTTTAGAGATAACCTCTCCTAC
GTATCTGCTACTTAACAGTTACCCGACCCCTCGCGAACATGCTCATCTGG
GAATTCCAGAAATCTTGCACATGGATTTATGGCGTCTAGAAGATGCGTCC
CACCGGCCTATCGTTGACTTCAAGACTGCATTCGATCAAGCTGCATGTTT
AATCGAGTGGCCTGATCGTTTACATTCTATCACACCCCGCACGCGTCTCG
AAATACATATGTCGTACATCAATGACGCCCCAGGTGTCGAGCCCTCAGAA
GATGATCCGTGGGGTTTTGGAATTGAGGATTCAGACAATTTGCGACAACA
ATGTGGGCGATATGTTTCACTTAGACCACATGGAAGGAAATGGTCTGAAA
GAGTGAAAACCCTGATTGACGACTTCACTTGCGTGGATGAAGCCAACCGC
GTTACTCTTGTTAACGATTGA
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