Gchil2895.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2895.t1
Unique Name	Gchil2895.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	678

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000106_pilon	contig	tig00000106_pilon:51924..53957 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	34740.HMEL002788-PA
Preferred name	CRNKL1
PFAMs	HAT
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K12869
KEGG Pathway	ko03040,map03040
KEGG Module	M00355
GOs	GO:0000245,GO:0000375,GO:0000377,GO:0000381,GO:0000398,GO:0000974,GO:0001655,GO:0001742,GO:0002009,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006928,GO:0007272,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007438,GO:0007442,GO:0007443,GO:0008150,GO:0008152,GO:0008347,GO:0008366,GO:0008380,GO:0009653,GO:0009719,GO:0009790,GO:0009888,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0016043,GO:0016070,GO:0016071,GO:0016477,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0021537,GO:0021543,GO:0021987,GO:0022008,GO:0022607,GO:0022613,GO:0022618,GO:0030154,GO:0030900,GO:0031323,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034097,GO:0034622,GO:0034641,GO:0035239,GO:0035295,GO:0040011,GO:0042063,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0048024,GO:0048468,GO:0048513,GO:0048546,GO:0048565,GO:0048598,GO:0048619,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0050684,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051179,GO:0051252,GO:0051674,GO:0051716,GO:0055123,GO:0060255,GO:0060322,GO:0060429,GO:0060562,GO:0061326,GO:0061333,GO:0061525,GO:0065003,GO:0065007,GO:0070013,GO:0070848,GO:0070887,GO:0071007,GO:0071010,GO:0071011,GO:0071012,GO:0071013,GO:0071014,GO:0071310,GO:0071345,GO:0071363,GO:0071495,GO:0071704,GO:0071826,GO:0071840,GO:0072001,GO:0072002,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902494,GO:1903311,GO:1990089,GO:1990090,GO:1990416,GO:1990823,GO:1990830,GO:1990904
Evalue	5.12e-85
EggNOG OGs	KOG1915@1\|root,KOG1915@2759\|Eukaryota,38FN1@33154\|Opisthokonta,3BEIY@33208\|Metazoa,3CVXY@33213\|Bilateria,41U4R@6656\|Arthropoda,3SID8@50557\|Insecta,441B7@7088\|Lepidoptera
Description	HAT (Half-A-TPR) repeat
COG category	D
BRITE	ko00000,ko00001,ko00002,ko03036,ko03041

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2895	Gchil2895	Gracilaria chilensis NLEC103_M9 male	gene	tig00000106_pilon 51924..53957 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2895.t1.start1	Gchil2895.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000106_pilon 51924..51926 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2895.t1.CDS1	Gchil2895.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000106_pilon 51924..53957 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2895.t1.exon1	Gchil2895.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000106_pilon 51924..53957 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2895.t1.stop1	Gchil2895.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000106_pilon 53955..53957 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2895.t1	Gchil2895.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000106_pilon 51924..53957 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000106_pilon:51924..53957+
coding sequence from alignment at tig00000106_pilon:51924..53957+

mRNA sequence

>Gchil2895.t1 ID=Gchil2895.t1|Name=Gchil2895.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=678bp
MDQVPSHARAQNAIRVKSKAPATIQITAEQLLREAWERKEPAVPIPKQHI
ADAEELLEYQRNERKQYEMRIVRNRSHTSLWMRYAKWEEEQNEIVRARSI
WERAIDNDYRNPVIWLNYAEMEMRHRFINHARNIFDRAVALLPRVDQIWL
KYAHMEEMLGQLSQARLVYDRWMKWLPEATAYFAFIRFELRHGRSEKARM
VYELLINAHPTSHSYIKYAKFEERHEQLAHARHVYERGSERLPSTQITSG
FFLSFAKFEERRKQVKRARAIYLYATTKFSESESPGLHQAFTNFEKQHGD
REALDKLLSSKKRSKYEAALAENPTDYDTWFDLLQLEEFTSSTEHVRKTY
ERAVAHLPPVATKPSWSRYVYLWVSYAIWEELSCDDLQTSINVYKRCMAL
VPKRHRKFSFGKLWIYYAQAEIRNKNVQAARKIFGTGLGVLPHKHVLYES
YIDFEMCLGEFERVREIYENWLTRNPTHEPGFLSFADFELRLGEFERGRL
VLEIATSVDELKSSLGLWKKLADVVKLEDETSAVRRFEGYVISQAHEAVW
LAYIYLMKDLYAADEAIRRVYERSVDALKGEAIAAKENGTQLRKQAFDMA
HMWLSWETERSDETEDKSAHVAQAKNAIPRRVKKIRKTEGGDEEFWEIVF
SQEETAVGGIGNLLEAARQWKKQQEKG*

spliced messenger RNA

>Gchil2895.t1 ID=Gchil2895.t1|Name=Gchil2895.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2034bp|location=Sequence derived from alignment at tig00000106_pilon:51924..53957+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCAAGTTCCATCCCACGCACGAGCTCAAAATGCAATTCGAGTAAA
AAGCAAGGCTCCGGCCACAATTCAGATTACAGCCGAGCAGCTTCTTCGAG
AAGCTTGGGAACGCAAAGAGCCAGCCGTTCCGATCCCGAAACAGCACATC
GCCGACGCCGAAGAGCTTCTCGAATATCAAAGAAATGAGCGAAAGCAGTA
TGAAATGCGAATTGTTCGCAATCGCTCACATACTTCTCTTTGGATGCGCT
ACGCAAAGTGGGAGGAAGAACAAAACGAGATCGTGCGCGCACGTTCCATC
TGGGAGCGAGCTATTGACAACGACTACCGCAACCCCGTGATATGGCTTAA
TTATGCTGAAATGGAAATGCGACACCGCTTTATCAATCATGCAAGAAATA
TATTTGACAGAGCTGTTGCTCTGTTACCCAGAGTGGACCAAATCTGGCTC
AAGTATGCTCATATGGAAGAAATGCTTGGACAACTCAGCCAGGCCCGATT
GGTATACGACCGTTGGATGAAATGGCTTCCCGAAGCCACCGCGTACTTCG
CGTTTATTCGCTTTGAGCTCCGTCATGGTCGTAGCGAAAAGGCTAGAATG
GTGTATGAATTACTTATAAATGCGCATCCGACCTCGCATTCTTACATCAA
ATACGCAAAGTTTGAGGAACGCCATGAGCAATTGGCGCATGCTCGTCATG
TATATGAGCGCGGATCTGAACGACTGCCGTCTACGCAAATAACATCAGGG
TTTTTTCTCTCCTTTGCAAAGTTTGAGGAACGTCGAAAACAGGTAAAACG
GGCCAGAGCCATCTACCTGTACGCGACTACAAAGTTTTCTGAGTCCGAAT
CTCCTGGGTTGCATCAAGCTTTCACCAACTTTGAAAAACAGCATGGAGAT
CGAGAGGCTCTAGACAAATTATTATCGTCGAAGAAGAGAAGCAAGTATGA
GGCTGCCCTGGCCGAAAATCCCACTGATTATGATACATGGTTTGACCTTC
TTCAATTAGAGGAGTTCACCTCATCCACTGAACATGTTCGGAAAACATAT
GAACGGGCTGTTGCACACTTACCCCCCGTTGCTACAAAGCCTTCATGGAG
TCGATACGTTTACCTTTGGGTTTCGTATGCGATTTGGGAAGAGCTCTCTT
GCGATGACTTGCAAACATCTATCAACGTGTACAAAAGATGTATGGCCTTA
GTACCCAAGCGCCATCGGAAGTTTTCATTTGGGAAACTTTGGATTTACTA
CGCGCAAGCCGAAATACGGAACAAGAATGTACAAGCAGCTCGCAAGATCT
TTGGCACAGGTCTTGGTGTACTTCCTCACAAGCATGTTTTATATGAATCA
TACATTGATTTCGAGATGTGTCTTGGAGAGTTCGAGCGTGTTCGAGAGAT
ATATGAGAACTGGCTCACAAGAAATCCAACCCACGAGCCTGGATTTCTCT
CGTTTGCAGACTTCGAACTAAGGCTCGGCGAATTTGAGAGAGGCAGATTG
GTGCTAGAAATTGCAACTTCAGTTGATGAACTGAAATCCTCGTTAGGACT
ATGGAAAAAACTCGCAGATGTTGTGAAACTCGAAGATGAAACTTCAGCTG
TTCGTCGTTTTGAAGGCTACGTTATCAGCCAAGCTCACGAAGCTGTCTGG
CTTGCATATATCTACTTAATGAAAGACCTGTATGCTGCAGATGAAGCTAT
ACGACGAGTCTATGAACGAAGTGTAGATGCTTTGAAAGGAGAAGCTATCG
CTGCAAAGGAGAACGGCACACAACTCAGAAAACAAGCTTTTGATATGGCG
CACATGTGGTTATCCTGGGAAACAGAGCGGTCTGATGAAACCGAAGACAA
GAGTGCTCATGTAGCTCAAGCGAAGAATGCGATTCCAAGAAGAGTGAAGA
AGATACGAAAGACCGAAGGTGGTGATGAAGAGTTTTGGGAAATTGTGTTC
TCACAAGAAGAAACCGCTGTCGGAGGCATTGGGAATCTTCTCGAGGCAGC
TCGGCAATGGAAGAAACAACAAGAAAAGGGATGA

protein sequence of Gchil2895.t1

>Gchil2895.t1 ID=Gchil2895.t1|Name=Gchil2895.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=678bp
MDQVPSHARAQNAIRVKSKAPATIQITAEQLLREAWERKEPAVPIPKQHI
ADAEELLEYQRNERKQYEMRIVRNRSHTSLWMRYAKWEEEQNEIVRARSI
WERAIDNDYRNPVIWLNYAEMEMRHRFINHARNIFDRAVALLPRVDQIWL
KYAHMEEMLGQLSQARLVYDRWMKWLPEATAYFAFIRFELRHGRSEKARM
VYELLINAHPTSHSYIKYAKFEERHEQLAHARHVYERGSERLPSTQITSG
FFLSFAKFEERRKQVKRARAIYLYATTKFSESESPGLHQAFTNFEKQHGD
REALDKLLSSKKRSKYEAALAENPTDYDTWFDLLQLEEFTSSTEHVRKTY
ERAVAHLPPVATKPSWSRYVYLWVSYAIWEELSCDDLQTSINVYKRCMAL
VPKRHRKFSFGKLWIYYAQAEIRNKNVQAARKIFGTGLGVLPHKHVLYES
YIDFEMCLGEFERVREIYENWLTRNPTHEPGFLSFADFELRLGEFERGRL
VLEIATSVDELKSSLGLWKKLADVVKLEDETSAVRRFEGYVISQAHEAVW
LAYIYLMKDLYAADEAIRRVYERSVDALKGEAIAAKENGTQLRKQAFDMA
HMWLSWETERSDETEDKSAHVAQAKNAIPRRVKKIRKTEGGDEEFWEIVF
SQEETAVGGIGNLLEAARQWKKQQEKG*

mRNA from alignment at tig00000106_pilon:51924..53957+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2895.t1 ID=Gchil2895.t1|Name=Gchil2895.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2034bp|location=Sequence derived from alignment at tig00000106_pilon:51924..53957+ (Gracilaria chilensis NLEC103_M9 male)
ATGGACCAAGTTCCATCCCACGCACGAGCTCAAAATGCAATTCGAGTAAA
AAGCAAGGCTCCGGCCACAATTCAGATTACAGCCGAGCAGCTTCTTCGAG
AAGCTTGGGAACGCAAAGAGCCAGCCGTTCCGATCCCGAAACAGCACATC
GCCGACGCCGAAGAGCTTCTCGAATATCAAAGAAATGAGCGAAAGCAGTA
TGAAATGCGAATTGTTCGCAATCGCTCACATACTTCTCTTTGGATGCGCT
ACGCAAAGTGGGAGGAAGAACAAAACGAGATCGTGCGCGCACGTTCCATC
TGGGAGCGAGCTATTGACAACGACTACCGCAACCCCGTGATATGGCTTAA
TTATGCTGAAATGGAAATGCGACACCGCTTTATCAATCATGCAAGAAATA
TATTTGACAGAGCTGTTGCTCTGTTACCCAGAGTGGACCAAATCTGGCTC
AAGTATGCTCATATGGAAGAAATGCTTGGACAACTCAGCCAGGCCCGATT
GGTATACGACCGTTGGATGAAATGGCTTCCCGAAGCCACCGCGTACTTCG
CGTTTATTCGCTTTGAGCTCCGTCATGGTCGTAGCGAAAAGGCTAGAATG
GTGTATGAATTACTTATAAATGCGCATCCGACCTCGCATTCTTACATCAA
ATACGCAAAGTTTGAGGAACGCCATGAGCAATTGGCGCATGCTCGTCATG
TATATGAGCGCGGATCTGAACGACTGCCGTCTACGCAAATAACATCAGGG
TTTTTTCTCTCCTTTGCAAAGTTTGAGGAACGTCGAAAACAGGTAAAACG
GGCCAGAGCCATCTACCTGTACGCGACTACAAAGTTTTCTGAGTCCGAAT
CTCCTGGGTTGCATCAAGCTTTCACCAACTTTGAAAAACAGCATGGAGAT
CGAGAGGCTCTAGACAAATTATTATCGTCGAAGAAGAGAAGCAAGTATGA
GGCTGCCCTGGCCGAAAATCCCACTGATTATGATACATGGTTTGACCTTC
TTCAATTAGAGGAGTTCACCTCATCCACTGAACATGTTCGGAAAACATAT
GAACGGGCTGTTGCACACTTACCCCCCGTTGCTACAAAGCCTTCATGGAG
TCGATACGTTTACCTTTGGGTTTCGTATGCGATTTGGGAAGAGCTCTCTT
GCGATGACTTGCAAACATCTATCAACGTGTACAAAAGATGTATGGCCTTA
GTACCCAAGCGCCATCGGAAGTTTTCATTTGGGAAACTTTGGATTTACTA
CGCGCAAGCCGAAATACGGAACAAGAATGTACAAGCAGCTCGCAAGATCT
TTGGCACAGGTCTTGGTGTACTTCCTCACAAGCATGTTTTATATGAATCA
TACATTGATTTCGAGATGTGTCTTGGAGAGTTCGAGCGTGTTCGAGAGAT
ATATGAGAACTGGCTCACAAGAAATCCAACCCACGAGCCTGGATTTCTCT
CGTTTGCAGACTTCGAACTAAGGCTCGGCGAATTTGAGAGAGGCAGATTG
GTGCTAGAAATTGCAACTTCAGTTGATGAACTGAAATCCTCGTTAGGACT
ATGGAAAAAACTCGCAGATGTTGTGAAACTCGAAGATGAAACTTCAGCTG
TTCGTCGTTTTGAAGGCTACGTTATCAGCCAAGCTCACGAAGCTGTCTGG
CTTGCATATATCTACTTAATGAAAGACCTGTATGCTGCAGATGAAGCTAT
ACGACGAGTCTATGAACGAAGTGTAGATGCTTTGAAAGGAGAAGCTATCG
CTGCAAAGGAGAACGGCACACAACTCAGAAAACAAGCTTTTGATATGGCG
CACATGTGGTTATCCTGGGAAACAGAGCGGTCTGATGAAACCGAAGACAA
GAGTGCTCATGTAGCTCAAGCGAAGAATGCGATTCCAAGAAGAGTGAAGA
AGATACGAAAGACCGAAGGTGGTGATGAAGAGTTTTGGGAAATTGTGTTC
TCACAAGAAGAAACCGCTGTCGGAGGCATTGGGAATCTTCTCGAGGCAGC
TCGGCAATGGAAGAAACAACAAGAAAAGGGATGA

Coding sequence (CDS) from alignment at tig00000106_pilon:51924..53957+

>Gchil2895.t1 ID=Gchil2895.t1|Name=Gchil2895.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2034bp|location=Sequence derived from alignment at tig00000106_pilon:51924..53957+ (Gracilaria chilensis NLEC103_M9 male)
ATGGACCAAGTTCCATCCCACGCACGAGCTCAAAATGCAATTCGAGTAAA
AAGCAAGGCTCCGGCCACAATTCAGATTACAGCCGAGCAGCTTCTTCGAG
AAGCTTGGGAACGCAAAGAGCCAGCCGTTCCGATCCCGAAACAGCACATC
GCCGACGCCGAAGAGCTTCTCGAATATCAAAGAAATGAGCGAAAGCAGTA
TGAAATGCGAATTGTTCGCAATCGCTCACATACTTCTCTTTGGATGCGCT
ACGCAAAGTGGGAGGAAGAACAAAACGAGATCGTGCGCGCACGTTCCATC
TGGGAGCGAGCTATTGACAACGACTACCGCAACCCCGTGATATGGCTTAA
TTATGCTGAAATGGAAATGCGACACCGCTTTATCAATCATGCAAGAAATA
TATTTGACAGAGCTGTTGCTCTGTTACCCAGAGTGGACCAAATCTGGCTC
AAGTATGCTCATATGGAAGAAATGCTTGGACAACTCAGCCAGGCCCGATT
GGTATACGACCGTTGGATGAAATGGCTTCCCGAAGCCACCGCGTACTTCG
CGTTTATTCGCTTTGAGCTCCGTCATGGTCGTAGCGAAAAGGCTAGAATG
GTGTATGAATTACTTATAAATGCGCATCCGACCTCGCATTCTTACATCAA
ATACGCAAAGTTTGAGGAACGCCATGAGCAATTGGCGCATGCTCGTCATG
TATATGAGCGCGGATCTGAACGACTGCCGTCTACGCAAATAACATCAGGG
TTTTTTCTCTCCTTTGCAAAGTTTGAGGAACGTCGAAAACAGGTAAAACG
GGCCAGAGCCATCTACCTGTACGCGACTACAAAGTTTTCTGAGTCCGAAT
CTCCTGGGTTGCATCAAGCTTTCACCAACTTTGAAAAACAGCATGGAGAT
CGAGAGGCTCTAGACAAATTATTATCGTCGAAGAAGAGAAGCAAGTATGA
GGCTGCCCTGGCCGAAAATCCCACTGATTATGATACATGGTTTGACCTTC
TTCAATTAGAGGAGTTCACCTCATCCACTGAACATGTTCGGAAAACATAT
GAACGGGCTGTTGCACACTTACCCCCCGTTGCTACAAAGCCTTCATGGAG
TCGATACGTTTACCTTTGGGTTTCGTATGCGATTTGGGAAGAGCTCTCTT
GCGATGACTTGCAAACATCTATCAACGTGTACAAAAGATGTATGGCCTTA
GTACCCAAGCGCCATCGGAAGTTTTCATTTGGGAAACTTTGGATTTACTA
CGCGCAAGCCGAAATACGGAACAAGAATGTACAAGCAGCTCGCAAGATCT
TTGGCACAGGTCTTGGTGTACTTCCTCACAAGCATGTTTTATATGAATCA
TACATTGATTTCGAGATGTGTCTTGGAGAGTTCGAGCGTGTTCGAGAGAT
ATATGAGAACTGGCTCACAAGAAATCCAACCCACGAGCCTGGATTTCTCT
CGTTTGCAGACTTCGAACTAAGGCTCGGCGAATTTGAGAGAGGCAGATTG
GTGCTAGAAATTGCAACTTCAGTTGATGAACTGAAATCCTCGTTAGGACT
ATGGAAAAAACTCGCAGATGTTGTGAAACTCGAAGATGAAACTTCAGCTG
TTCGTCGTTTTGAAGGCTACGTTATCAGCCAAGCTCACGAAGCTGTCTGG
CTTGCATATATCTACTTAATGAAAGACCTGTATGCTGCAGATGAAGCTAT
ACGACGAGTCTATGAACGAAGTGTAGATGCTTTGAAAGGAGAAGCTATCG
CTGCAAAGGAGAACGGCACACAACTCAGAAAACAAGCTTTTGATATGGCG
CACATGTGGTTATCCTGGGAAACAGAGCGGTCTGATGAAACCGAAGACAA
GAGTGCTCATGTAGCTCAAGCGAAGAATGCGATTCCAAGAAGAGTGAAGA
AGATACGAAAGACCGAAGGTGGTGATGAAGAGTTTTGGGAAATTGTGTTC
TCACAAGAAGAAACCGCTGTCGGAGGCATTGGGAATCTTCTCGAGGCAGC
TCGGCAATGGAAGAAACAACAAGAAAAGGGATGA