Gchil2892.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2892.t1
Unique NameGchil2892.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length485
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:45655..47109 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMK186CT
Preferred nameYIF1B
PFAMsYIF1
Max annot lvl2759|Eukaryota
KEGG koko:K08023,ko:K20362
GOsGO:0000139,GO:0000902,GO:0002790,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005793,GO:0005794,GO:0005798,GO:0006810,GO:0006886,GO:0006888,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0009306,GO:0009653,GO:0009987,GO:0010033,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016192,GO:0023052,GO:0030134,GO:0030135,GO:0030173,GO:0030968,GO:0031090,GO:0031224,GO:0031228,GO:0031300,GO:0031301,GO:0031410,GO:0031982,GO:0031984,GO:0032502,GO:0032940,GO:0032989,GO:0033036,GO:0033554,GO:0034613,GO:0034620,GO:0034976,GO:0035966,GO:0035967,GO:0036498,GO:0042175,GO:0042221,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046903,GO:0046907,GO:0048193,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0065007,GO:0070727,GO:0070887,GO:0071310,GO:0071702,GO:0071705,GO:0071840,GO:0097708,GO:0098588,GO:0098791,GO:0098827
Evalue3.14e-43
EggNOG OGsCOG5197@1|root,KOG3094@2759|Eukaryota
DescriptionER to Golgi vesicle-mediated transport
COG categoryI
BRITEko00000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2892Gchil2892Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 45655..47109 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2892.t1.start1Gchil2892.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 45655..45657 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2892.t1.CDS1Gchil2892.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 45655..47109 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2892.t1.exon1Gchil2892.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 45655..47109 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2892.t1.stop1Gchil2892.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 47107..47109 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2892.t1Gchil2892.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 45655..47109 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2892.t1 ID=Gchil2892.t1|Name=Gchil2892.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=485bp
MYNNSAGHDHDMQRRKRDSSSFFTTPNPPNYHPNAYQTPHETQTPSENSN
FVSMSKPPQPPSHPSYAPQRNMSSTTSAYSNGFAQPINNSPNGVSQPHTS
SETQFYAPTQYTPSPSDAASTPYSFIPQQTYRSSSNQPIPHPPISNDSST
SFVPLTSAPHSTSQSSYFEPPQQQFHPSSMTEQHVQRAPPPVQPHQFRQA
EMSQPQSSHADPLQNGMAFVFAGMQQMASGSAPAANVGAQLFQTLAPGAM
GYGNQLFGQGQERVSSFMKMPKYYFAVNHKYVLKKLILLLAPFRNRTWAR
QRGIDAAQFEVSGSDGATSYLPPRDDVNAPDLYIPVMSFLTYVLLVGFVF
GMQEKFKAEILARYFSRGLGVLTLEVLIIKLGLYLINARPTPWLDVIAYR
GYKFVGVVLTMSTGILVRRLYYPVLLYSATAMGIFLMRSHRRIILPRDMD
SHQAHDLARRNFFLLFLSVLQYPVYWVLVLDPRH*
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spliced messenger RNA

>Gchil2892.t1 ID=Gchil2892.t1|Name=Gchil2892.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1455bp|location=Sequence derived from alignment at tig00000106_pilon:45655..47109+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACAACAACTCAGCCGGCCACGATCACGACATGCAGCGTCGGAAGCG
CGACTCCTCTTCGTTTTTCACCACCCCCAACCCGCCCAACTATCATCCAA
ACGCGTATCAAACCCCTCATGAGACACAAACGCCTTCAGAAAACTCCAAT
TTCGTTTCAATGAGCAAACCGCCGCAGCCGCCGTCTCACCCTTCGTATGC
GCCGCAACGAAATATGTCTTCCACTACGTCTGCTTACTCTAATGGGTTTG
CACAGCCCATTAATAACTCTCCAAACGGTGTTTCGCAGCCGCATACATCG
TCAGAGACCCAGTTCTACGCTCCCACCCAATACACACCGTCGCCGTCTGA
TGCTGCTTCTACTCCCTACTCTTTCATCCCCCAACAAACCTATCGTTCCA
GTTCGAATCAACCCATTCCACACCCTCCGATTTCAAATGACAGCTCCACA
AGTTTCGTACCTCTAACTTCCGCCCCGCATTCGACATCACAGTCTTCATA
CTTTGAACCCCCACAGCAGCAGTTCCATCCATCAAGCATGACAGAGCAGC
ATGTGCAGCGCGCGCCACCCCCAGTTCAACCCCATCAATTTCGTCAAGCT
GAGATGAGCCAGCCGCAATCATCCCATGCTGATCCCTTGCAAAACGGTAT
GGCATTTGTGTTTGCTGGAATGCAACAGATGGCCAGTGGAAGCGCACCAG
CTGCTAATGTTGGTGCTCAACTGTTTCAAACTTTAGCGCCAGGTGCTATG
GGGTACGGAAATCAGCTGTTCGGCCAAGGACAAGAGCGCGTCAGTAGCTT
CATGAAGATGCCAAAGTATTACTTTGCTGTCAATCACAAGTACGTCTTGA
AAAAGCTCATACTACTGCTTGCCCCGTTTAGAAATCGAACTTGGGCAAGA
CAGAGGGGGATTGACGCAGCACAATTTGAGGTGTCGGGCAGTGATGGTGC
TACATCATACCTTCCCCCTCGCGATGATGTCAATGCTCCAGATCTGTACA
TACCTGTGATGTCCTTCCTTACATACGTTCTCTTGGTCGGTTTTGTTTTT
GGTATGCAAGAAAAGTTCAAGGCAGAGATATTAGCTCGCTACTTTTCCAG
AGGTCTTGGTGTCCTTACATTGGAAGTTCTGATCATCAAGCTCGGATTGT
ATCTGATAAATGCCCGCCCAACGCCGTGGTTGGATGTCATTGCGTATAGA
GGTTACAAATTCGTCGGTGTCGTGCTCACAATGTCAACAGGGATACTTGT
GCGAAGATTATATTACCCTGTACTACTTTATTCGGCAACCGCAATGGGCA
TTTTCCTTATGAGATCGCACAGGAGAATCATTCTGCCGCGAGATATGGAT
TCCCATCAAGCTCATGATCTTGCGCGCCGTAATTTTTTCCTATTGTTTCT
AAGCGTACTGCAGTACCCAGTATATTGGGTTCTTGTTCTCGATCCAAGGC
ATTAA
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protein sequence of Gchil2892.t1

>Gchil2892.t1 ID=Gchil2892.t1|Name=Gchil2892.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=485bp
MYNNSAGHDHDMQRRKRDSSSFFTTPNPPNYHPNAYQTPHETQTPSENSN
FVSMSKPPQPPSHPSYAPQRNMSSTTSAYSNGFAQPINNSPNGVSQPHTS
SETQFYAPTQYTPSPSDAASTPYSFIPQQTYRSSSNQPIPHPPISNDSST
SFVPLTSAPHSTSQSSYFEPPQQQFHPSSMTEQHVQRAPPPVQPHQFRQA
EMSQPQSSHADPLQNGMAFVFAGMQQMASGSAPAANVGAQLFQTLAPGAM
GYGNQLFGQGQERVSSFMKMPKYYFAVNHKYVLKKLILLLAPFRNRTWAR
QRGIDAAQFEVSGSDGATSYLPPRDDVNAPDLYIPVMSFLTYVLLVGFVF
GMQEKFKAEILARYFSRGLGVLTLEVLIIKLGLYLINARPTPWLDVIAYR
GYKFVGVVLTMSTGILVRRLYYPVLLYSATAMGIFLMRSHRRIILPRDMD
SHQAHDLARRNFFLLFLSVLQYPVYWVLVLDPRH*
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mRNA from alignment at tig00000106_pilon:45655..47109+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2892.t1 ID=Gchil2892.t1|Name=Gchil2892.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1455bp|location=Sequence derived from alignment at tig00000106_pilon:45655..47109+ (Gracilaria chilensis NLEC103_M9 male)
ATGTACAACAACTCAGCCGGCCACGATCACGACATGCAGCGTCGGAAGCG
CGACTCCTCTTCGTTTTTCACCACCCCCAACCCGCCCAACTATCATCCAA
ACGCGTATCAAACCCCTCATGAGACACAAACGCCTTCAGAAAACTCCAAT
TTCGTTTCAATGAGCAAACCGCCGCAGCCGCCGTCTCACCCTTCGTATGC
GCCGCAACGAAATATGTCTTCCACTACGTCTGCTTACTCTAATGGGTTTG
CACAGCCCATTAATAACTCTCCAAACGGTGTTTCGCAGCCGCATACATCG
TCAGAGACCCAGTTCTACGCTCCCACCCAATACACACCGTCGCCGTCTGA
TGCTGCTTCTACTCCCTACTCTTTCATCCCCCAACAAACCTATCGTTCCA
GTTCGAATCAACCCATTCCACACCCTCCGATTTCAAATGACAGCTCCACA
AGTTTCGTACCTCTAACTTCCGCCCCGCATTCGACATCACAGTCTTCATA
CTTTGAACCCCCACAGCAGCAGTTCCATCCATCAAGCATGACAGAGCAGC
ATGTGCAGCGCGCGCCACCCCCAGTTCAACCCCATCAATTTCGTCAAGCT
GAGATGAGCCAGCCGCAATCATCCCATGCTGATCCCTTGCAAAACGGTAT
GGCATTTGTGTTTGCTGGAATGCAACAGATGGCCAGTGGAAGCGCACCAG
CTGCTAATGTTGGTGCTCAACTGTTTCAAACTTTAGCGCCAGGTGCTATG
GGGTACGGAAATCAGCTGTTCGGCCAAGGACAAGAGCGCGTCAGTAGCTT
CATGAAGATGCCAAAGTATTACTTTGCTGTCAATCACAAGTACGTCTTGA
AAAAGCTCATACTACTGCTTGCCCCGTTTAGAAATCGAACTTGGGCAAGA
CAGAGGGGGATTGACGCAGCACAATTTGAGGTGTCGGGCAGTGATGGTGC
TACATCATACCTTCCCCCTCGCGATGATGTCAATGCTCCAGATCTGTACA
TACCTGTGATGTCCTTCCTTACATACGTTCTCTTGGTCGGTTTTGTTTTT
GGTATGCAAGAAAAGTTCAAGGCAGAGATATTAGCTCGCTACTTTTCCAG
AGGTCTTGGTGTCCTTACATTGGAAGTTCTGATCATCAAGCTCGGATTGT
ATCTGATAAATGCCCGCCCAACGCCGTGGTTGGATGTCATTGCGTATAGA
GGTTACAAATTCGTCGGTGTCGTGCTCACAATGTCAACAGGGATACTTGT
GCGAAGATTATATTACCCTGTACTACTTTATTCGGCAACCGCAATGGGCA
TTTTCCTTATGAGATCGCACAGGAGAATCATTCTGCCGCGAGATATGGAT
TCCCATCAAGCTCATGATCTTGCGCGCCGTAATTTTTTCCTATTGTTTCT
AAGCGTACTGCAGTACCCAGTATATTGGGTTCTTGTTCTCGATCCAAGGC
ATTAA
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Coding sequence (CDS) from alignment at tig00000106_pilon:45655..47109+

>Gchil2892.t1 ID=Gchil2892.t1|Name=Gchil2892.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1455bp|location=Sequence derived from alignment at tig00000106_pilon:45655..47109+ (Gracilaria chilensis NLEC103_M9 male)
ATGTACAACAACTCAGCCGGCCACGATCACGACATGCAGCGTCGGAAGCG
CGACTCCTCTTCGTTTTTCACCACCCCCAACCCGCCCAACTATCATCCAA
ACGCGTATCAAACCCCTCATGAGACACAAACGCCTTCAGAAAACTCCAAT
TTCGTTTCAATGAGCAAACCGCCGCAGCCGCCGTCTCACCCTTCGTATGC
GCCGCAACGAAATATGTCTTCCACTACGTCTGCTTACTCTAATGGGTTTG
CACAGCCCATTAATAACTCTCCAAACGGTGTTTCGCAGCCGCATACATCG
TCAGAGACCCAGTTCTACGCTCCCACCCAATACACACCGTCGCCGTCTGA
TGCTGCTTCTACTCCCTACTCTTTCATCCCCCAACAAACCTATCGTTCCA
GTTCGAATCAACCCATTCCACACCCTCCGATTTCAAATGACAGCTCCACA
AGTTTCGTACCTCTAACTTCCGCCCCGCATTCGACATCACAGTCTTCATA
CTTTGAACCCCCACAGCAGCAGTTCCATCCATCAAGCATGACAGAGCAGC
ATGTGCAGCGCGCGCCACCCCCAGTTCAACCCCATCAATTTCGTCAAGCT
GAGATGAGCCAGCCGCAATCATCCCATGCTGATCCCTTGCAAAACGGTAT
GGCATTTGTGTTTGCTGGAATGCAACAGATGGCCAGTGGAAGCGCACCAG
CTGCTAATGTTGGTGCTCAACTGTTTCAAACTTTAGCGCCAGGTGCTATG
GGGTACGGAAATCAGCTGTTCGGCCAAGGACAAGAGCGCGTCAGTAGCTT
CATGAAGATGCCAAAGTATTACTTTGCTGTCAATCACAAGTACGTCTTGA
AAAAGCTCATACTACTGCTTGCCCCGTTTAGAAATCGAACTTGGGCAAGA
CAGAGGGGGATTGACGCAGCACAATTTGAGGTGTCGGGCAGTGATGGTGC
TACATCATACCTTCCCCCTCGCGATGATGTCAATGCTCCAGATCTGTACA
TACCTGTGATGTCCTTCCTTACATACGTTCTCTTGGTCGGTTTTGTTTTT
GGTATGCAAGAAAAGTTCAAGGCAGAGATATTAGCTCGCTACTTTTCCAG
AGGTCTTGGTGTCCTTACATTGGAAGTTCTGATCATCAAGCTCGGATTGT
ATCTGATAAATGCCCGCCCAACGCCGTGGTTGGATGTCATTGCGTATAGA
GGTTACAAATTCGTCGGTGTCGTGCTCACAATGTCAACAGGGATACTTGT
GCGAAGATTATATTACCCTGTACTACTTTATTCGGCAACCGCAATGGGCA
TTTTCCTTATGAGATCGCACAGGAGAATCATTCTGCCGCGAGATATGGAT
TCCCATCAAGCTCATGATCTTGCGCGCCGTAATTTTTTCCTATTGTTTCT
AAGCGTACTGCAGTACCCAGTATATTGGGTTCTTGTTCTCGATCCAAGGC
ATTAA
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