Gchil2885.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2885.t1
Unique NameGchil2885.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length450
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:24690..26141 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4113.PGSC0003DMT400001564
PFAMsBand_7,Band_7_C
Max annot lvl35493|Streptophyta
Evalue1.12e-38
EggNOG OGsCOG0330@1|root,KOG2620@2759|Eukaryota,37HFS@33090|Viridiplantae,3GF0M@35493|Streptophyta,44EEY@71274|asterids
DescriptionSPFH domain / Band 7 family
COG categoryC
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2885Gchil2885Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 24690..26141 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2885.t1Gchil2885.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 24690..26141 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2885.t1.stop1Gchil2885.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 24690..24692 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2885.t1.CDS1Gchil2885.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 24690..25511 -
Gchil2885.t1.CDS2Gchil2885.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 25614..26141 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2885.t1.exon1Gchil2885.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 24690..25511 -
Gchil2885.t1.exon2Gchil2885.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 25614..26141 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2885.t1.intron1Gchil2885.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000106_pilon 25512..25613 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2885.t1.start1Gchil2885.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 26139..26141 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2885.t1 ID=Gchil2885.t1|Name=Gchil2885.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=450bp
MHLLRLLGRGRFDQRHRRRRAQRRLEEDGNYLAEKARREEEQRNSRRDSA
LGVAADAISEQQSSRNAKYQRVRQQTASGGYVDDDYLHDPVPHPLNSSPV
EYAQPTETHDDEQAASHYQRARRPHSARSRPSEQRNGENEATGEKPQEQQ
DENEEEDGDDLLAGGRGLLKKFANSKKFWDKRKEQQKEEEEGEEDEAIEA
YCAAGPFDSEEIYLGPNPLNLVPPPTKFSVKVPQNDAFIVEKGGRFHRKL
NAGRNTLIPCMDHIAFRYSLKEASMPIAWQQCFTGEKVPIHVNALLFVRV
DDPVSASYEIDNPYHAIIMLVQSSIKRDFNKLSVEQACTERYHLDQVIED
IINTALRAWGVRCTRFEIKQVELPEDLRISLENAAAADRQRREEVRAAET
QCEIMVNRAEAEMQLQMKGAQARQVDMVNQAIGEAHAISERSEAIASAM*
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spliced messenger RNA

>Gchil2885.t1 ID=Gchil2885.t1|Name=Gchil2885.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1350bp|location=Sequence derived from alignment at tig00000106_pilon:24690..26141- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACCTCCTCCGCCTGCTCGGGCGTGGCCGGTTTGATCAGCGTCACCG
TCGCCGCCGAGCGCAGCGTCGTCTCGAAGAAGATGGGAACTATCTAGCCG
AAAAGGCGCGTCGAGAAGAGGAACAACGAAACAGTCGCAGGGATTCTGCG
CTGGGAGTCGCTGCTGATGCCATCTCTGAACAACAATCTTCACGGAATGC
CAAGTACCAGCGTGTTAGACAGCAAACGGCTTCTGGCGGCTATGTGGATG
ATGACTATCTCCACGATCCTGTACCACATCCCCTCAATAGCTCGCCTGTC
GAATATGCTCAGCCCACAGAGACCCATGACGACGAGCAGGCTGCCTCTCA
CTACCAACGCGCACGTCGACCACACTCGGCACGTTCAAGACCGTCTGAGC
AACGAAATGGGGAGAATGAGGCCACTGGCGAAAAGCCCCAAGAGCAACAA
GACGAAAACGAGGAAGAAGACGGAGATGATTTGTTAGCTGGAGGTCGTGG
TCTGCTCAAAAAGTTTGCCAACAGCAAGAAGTTCTGGGATAAGCGAAAAG
AACAGCAGAAGGAAGAGGAGGAAGGAGAGGAAGACGAAGCCATTGAAGCG
TATTGTGCAGCGGGACCTTTTGATTCGGAGGAAATATATCTAGGACCAAA
TCCATTGAATCTTGTTCCGCCGCCGACCAAGTTTAGCGTCAAAGTTCCTC
AGAACGATGCGTTTATCGTTGAGAAGGGCGGTAGGTTTCATCGAAAGCTT
AATGCTGGAAGAAATACACTCATTCCTTGCATGGATCATATTGCGTTCCG
ATACTCGCTCAAAGAGGCTAGCATGCCTATTGCTTGGCAGCAATGTTTCA
CTGGTGAGAAAGTGCCAATTCACGTGAATGCTCTGTTATTTGTTCGGGTG
GATGATCCAGTATCTGCATCGTACGAGATTGACAACCCTTATCATGCCAT
CATCATGCTTGTACAAAGCTCTATCAAGAGAGATTTTAACAAGTTGTCGG
TTGAACAAGCATGTACAGAACGATATCATCTGGACCAAGTTATCGAAGAT
ATTATCAACACAGCTTTGAGAGCGTGGGGTGTTCGTTGCACTCGCTTTGA
AATCAAGCAAGTGGAGCTACCAGAAGATCTTAGAATCTCGCTTGAGAACG
CCGCCGCAGCAGACCGACAACGTCGGGAAGAAGTTCGAGCCGCCGAAACG
CAGTGTGAAATCATGGTGAATCGCGCGGAAGCCGAGATGCAGTTGCAAAT
GAAAGGTGCACAAGCACGACAAGTTGACATGGTGAATCAAGCGATTGGCG
AAGCTCATGCCATCTCTGAACGGAGCGAAGCGATTGCAAGCGCCATGTGA
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protein sequence of Gchil2885.t1

>Gchil2885.t1 ID=Gchil2885.t1|Name=Gchil2885.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=450bp
MHLLRLLGRGRFDQRHRRRRAQRRLEEDGNYLAEKARREEEQRNSRRDSA
LGVAADAISEQQSSRNAKYQRVRQQTASGGYVDDDYLHDPVPHPLNSSPV
EYAQPTETHDDEQAASHYQRARRPHSARSRPSEQRNGENEATGEKPQEQQ
DENEEEDGDDLLAGGRGLLKKFANSKKFWDKRKEQQKEEEEGEEDEAIEA
YCAAGPFDSEEIYLGPNPLNLVPPPTKFSVKVPQNDAFIVEKGGRFHRKL
NAGRNTLIPCMDHIAFRYSLKEASMPIAWQQCFTGEKVPIHVNALLFVRV
DDPVSASYEIDNPYHAIIMLVQSSIKRDFNKLSVEQACTERYHLDQVIED
IINTALRAWGVRCTRFEIKQVELPEDLRISLENAAAADRQRREEVRAAET
QCEIMVNRAEAEMQLQMKGAQARQVDMVNQAIGEAHAISERSEAIASAM*
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mRNA from alignment at tig00000106_pilon:24690..26141-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2885.t1 ID=Gchil2885.t1|Name=Gchil2885.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1452bp|location=Sequence derived from alignment at tig00000106_pilon:24690..26141- (Gracilaria chilensis NLEC103_M9 male)
ATGCACCTCCTCCGCCTGCTCGGGCGTGGCCGGTTTGATCAGCGTCACCG
TCGCCGCCGAGCGCAGCGTCGTCTCGAAGAAGATGGGAACTATCTAGCCG
AAAAGGCGCGTCGAGAAGAGGAACAACGAAACAGTCGCAGGGATTCTGCG
CTGGGAGTCGCTGCTGATGCCATCTCTGAACAACAATCTTCACGGAATGC
CAAGTACCAGCGTGTTAGACAGCAAACGGCTTCTGGCGGCTATGTGGATG
ATGACTATCTCCACGATCCTGTACCACATCCCCTCAATAGCTCGCCTGTC
GAATATGCTCAGCCCACAGAGACCCATGACGACGAGCAGGCTGCCTCTCA
CTACCAACGCGCACGTCGACCACACTCGGCACGTTCAAGACCGTCTGAGC
AACGAAATGGGGAGAATGAGGCCACTGGCGAAAAGCCCCAAGAGCAACAA
GACGAAAACGAGGAAGAAGACGGAGATGATTTGTTAGCTGGAGGTCGTGG
TCTGCTCAAAAAGTTTGCCAACAGCAAGGTGCTTGAGGCTGTCACTGCAA
ACTAACCGAAAAGAAAGAGTAAAATATTTACGACGGCTGCCGCTCTTGCC
GGAACTGCAGCCTTGGCGTTTGTCACTAAGAAGTTCTGGGATAAGCGAAA
AGAACAGCAGAAGGAAGAGGAGGAAGGAGAGGAAGACGAAGCCATTGAAG
CGTATTGTGCAGCGGGACCTTTTGATTCGGAGGAAATATATCTAGGACCA
AATCCATTGAATCTTGTTCCGCCGCCGACCAAGTTTAGCGTCAAAGTTCC
TCAGAACGATGCGTTTATCGTTGAGAAGGGCGGTAGGTTTCATCGAAAGC
TTAATGCTGGAAGAAATACACTCATTCCTTGCATGGATCATATTGCGTTC
CGATACTCGCTCAAAGAGGCTAGCATGCCTATTGCTTGGCAGCAATGTTT
CACTGGTGAGAAAGTGCCAATTCACGTGAATGCTCTGTTATTTGTTCGGG
TGGATGATCCAGTATCTGCATCGTACGAGATTGACAACCCTTATCATGCC
ATCATCATGCTTGTACAAAGCTCTATCAAGAGAGATTTTAACAAGTTGTC
GGTTGAACAAGCATGTACAGAACGATATCATCTGGACCAAGTTATCGAAG
ATATTATCAACACAGCTTTGAGAGCGTGGGGTGTTCGTTGCACTCGCTTT
GAAATCAAGCAAGTGGAGCTACCAGAAGATCTTAGAATCTCGCTTGAGAA
CGCCGCCGCAGCAGACCGACAACGTCGGGAAGAAGTTCGAGCCGCCGAAA
CGCAGTGTGAAATCATGGTGAATCGCGCGGAAGCCGAGATGCAGTTGCAA
ATGAAAGGTGCACAAGCACGACAAGTTGACATGGTGAATCAAGCGATTGG
CGAAGCTCATGCCATCTCTGAACGGAGCGAAGCGATTGCAAGCGCCATGT
GA
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Coding sequence (CDS) from alignment at tig00000106_pilon:24690..26141-

>Gchil2885.t1 ID=Gchil2885.t1|Name=Gchil2885.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1350bp|location=Sequence derived from alignment at tig00000106_pilon:24690..26141- (Gracilaria chilensis NLEC103_M9 male)
ATGCACCTCCTCCGCCTGCTCGGGCGTGGCCGGTTTGATCAGCGTCACCG
TCGCCGCCGAGCGCAGCGTCGTCTCGAAGAAGATGGGAACTATCTAGCCG
AAAAGGCGCGTCGAGAAGAGGAACAACGAAACAGTCGCAGGGATTCTGCG
CTGGGAGTCGCTGCTGATGCCATCTCTGAACAACAATCTTCACGGAATGC
CAAGTACCAGCGTGTTAGACAGCAAACGGCTTCTGGCGGCTATGTGGATG
ATGACTATCTCCACGATCCTGTACCACATCCCCTCAATAGCTCGCCTGTC
GAATATGCTCAGCCCACAGAGACCCATGACGACGAGCAGGCTGCCTCTCA
CTACCAACGCGCACGTCGACCACACTCGGCACGTTCAAGACCGTCTGAGC
AACGAAATGGGGAGAATGAGGCCACTGGCGAAAAGCCCCAAGAGCAACAA
GACGAAAACGAGGAAGAAGACGGAGATGATTTGTTAGCTGGAGGTCGTGG
TCTGCTCAAAAAGTTTGCCAACAGCAAGAAGTTCTGGGATAAGCGAAAAG
AACAGCAGAAGGAAGAGGAGGAAGGAGAGGAAGACGAAGCCATTGAAGCG
TATTGTGCAGCGGGACCTTTTGATTCGGAGGAAATATATCTAGGACCAAA
TCCATTGAATCTTGTTCCGCCGCCGACCAAGTTTAGCGTCAAAGTTCCTC
AGAACGATGCGTTTATCGTTGAGAAGGGCGGTAGGTTTCATCGAAAGCTT
AATGCTGGAAGAAATACACTCATTCCTTGCATGGATCATATTGCGTTCCG
ATACTCGCTCAAAGAGGCTAGCATGCCTATTGCTTGGCAGCAATGTTTCA
CTGGTGAGAAAGTGCCAATTCACGTGAATGCTCTGTTATTTGTTCGGGTG
GATGATCCAGTATCTGCATCGTACGAGATTGACAACCCTTATCATGCCAT
CATCATGCTTGTACAAAGCTCTATCAAGAGAGATTTTAACAAGTTGTCGG
TTGAACAAGCATGTACAGAACGATATCATCTGGACCAAGTTATCGAAGAT
ATTATCAACACAGCTTTGAGAGCGTGGGGTGTTCGTTGCACTCGCTTTGA
AATCAAGCAAGTGGAGCTACCAGAAGATCTTAGAATCTCGCTTGAGAACG
CCGCCGCAGCAGACCGACAACGTCGGGAAGAAGTTCGAGCCGCCGAAACG
CAGTGTGAAATCATGGTGAATCGCGCGGAAGCCGAGATGCAGTTGCAAAT
GAAAGGTGCACAAGCACGACAAGTTGACATGGTGAATCAAGCGATTGGCG
AAGCTCATGCCATCTCTGAACGGAGCGAAGCGATTGCAAGCGCCATGTGA
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