Gchil2882.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2882.t1
Unique Name	Gchil2882.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	551

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004406_pilon	contig	tig00004406_pilon:1060050..1061702 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4577.GRMZM2G088088_P01
PFAMs	Arm,Arm_3,IBB
Max annot lvl	35493\|Streptophyta
GOs	GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005654,GO:0005737,GO:0005829,GO:0006606,GO:0006607,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008139,GO:0008150,GO:0008565,GO:0012505,GO:0015031,GO:0015833,GO:0017038,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034504,GO:0034613,GO:0042277,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0072594
Evalue	1.51e-128
EggNOG OGs	COG5064@1\|root,KOG0166@2759\|Eukaryota,37HJI@33090\|Viridiplantae,3GAGW@35493\|Streptophyta,3KURU@4447\|Liliopsida,3ICU0@38820\|Poales
Description	Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope
COG category	U

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2882	Gchil2882	Gracilaria chilensis NLEC103_M9 male	gene	tig00004406_pilon 1060050..1061702 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2882.t1.start1	Gchil2882.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004406_pilon 1060050..1060052 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2882.t1.CDS1	Gchil2882.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004406_pilon 1060050..1061702 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2882.t1.exon1	Gchil2882.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004406_pilon 1060050..1061702 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2882.t1.stop1	Gchil2882.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004406_pilon 1061700..1061702 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2882.t1	Gchil2882.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004406_pilon 1060050..1061702 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004406_pilon:1060050..1061702+
coding sequence from alignment at tig00004406_pilon:1060050..1061702+

mRNA sequence

>Gchil2882.t1 ID=Gchil2882.t1|Name=Gchil2882.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=551bp
MSDRVTKQDLRKGRFKKAIDRDEARRQREDNLVGIRKSKREESLMKKRRE
RMSVNSTFATPADVDSQSTTDSNAPLALQYAQRLPAMVAGVYSEDPNQQV
QATLDFRRVLSIEKNPPIAEVISHNVVPRFVQFLKNDHNPQLQFEAAWSL
TNIASGTSAHTKVVIDSGAIPIFVYLLNSRYDDVREQAVWALGNIAGDSA
SCRDLVLEAGALHPLLVQLTGDSKVTMLRNATWTLSNFCRGKPPPDFEMV
RPALATLSHVLYYDDEEVLTDACWALSYLSDGNNDKITAVVESGVVKRLV
ELLLHQSVSVQTPALRTVGNIVTGDDMQTQFVINSAALPCLLSLLNSPKK
SIRKEACWTISNITAGNKDQIQAVMDANIIPPLIYTLSHADFDIKKEAAW
AISNATSGGTSQQIKFLVNNGAIEPLCNLLTVHEVRIVGVALEGLENILR
VGQKEKETAGADMNEYARDIESVGGLDKIETLQQHSNQDVYEKAVRILEV
FFMAEEEEEIEGVVPDSAETQFGFGVQNQAPEGGFNFGNPSGFGGPGWGQ
*

spliced messenger RNA

>Gchil2882.t1 ID=Gchil2882.t1|Name=Gchil2882.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1653bp|location=Sequence derived from alignment at tig00004406_pilon:1060050..1061702+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGACCGCGTCACCAAACAGGACCTTCGTAAAGGCCGCTTCAAGAA
GGCCATTGATCGCGATGAGGCCCGCCGCCAGCGCGAGGACAACCTCGTCG
GCATCCGCAAGTCCAAACGCGAGGAAAGCCTCATGAAGAAGCGTCGCGAA
CGCATGAGTGTCAACTCTACATTTGCCACTCCCGCCGATGTCGACTCGCA
GTCCACCACCGATTCCAACGCCCCGCTCGCCCTCCAGTACGCCCAGCGTC
TTCCGGCCATGGTGGCTGGTGTCTATTCGGAAGACCCCAATCAGCAGGTT
CAAGCCACCCTCGACTTTCGCCGCGTGCTCTCCATCGAGAAGAACCCCCC
CATCGCGGAGGTCATTTCCCACAATGTCGTCCCTCGCTTTGTCCAGTTTT
TGAAGAACGATCACAACCCCCAACTACAGTTTGAGGCCGCTTGGTCGCTC
ACAAACATTGCCTCCGGTACCTCGGCACACACTAAAGTCGTCATTGATAG
TGGTGCCATACCCATCTTTGTGTACTTGTTGAACTCACGCTATGATGATG
TTCGTGAGCAGGCTGTGTGGGCCCTTGGCAATATTGCCGGCGACTCGGCC
TCCTGCCGCGATCTTGTGCTGGAGGCGGGCGCCTTGCACCCTCTCCTTGT
ACAGCTCACCGGAGACTCCAAAGTCACCATGTTGAGGAACGCAACCTGGA
CTCTATCCAACTTCTGTCGTGGCAAGCCTCCACCAGACTTTGAGATGGTT
CGACCGGCTCTTGCCACTCTATCTCACGTGCTCTATTATGACGATGAGGA
AGTTCTAACCGACGCTTGTTGGGCCCTGTCCTATCTATCGGACGGAAACA
ATGATAAGATTACCGCCGTTGTGGAAAGTGGTGTCGTCAAGCGTTTGGTC
GAGCTTTTACTCCATCAGAGCGTCTCCGTCCAGACACCGGCGCTTCGCAC
CGTCGGCAACATTGTCACTGGCGACGATATGCAGACTCAGTTTGTCATCA
ACAGCGCTGCTCTTCCATGCCTGCTCAGCCTTCTCAACTCTCCTAAGAAG
TCTATTCGCAAGGAGGCGTGCTGGACTATATCCAACATCACTGCCGGAAA
TAAGGACCAAATTCAGGCCGTTATGGATGCCAATATCATTCCGCCTCTCA
TATACACGCTGTCTCATGCCGACTTTGATATCAAGAAGGAGGCTGCCTGG
GCCATATCCAACGCCACATCCGGGGGAACTTCTCAACAGATCAAGTTCCT
TGTCAATAACGGAGCTATTGAGCCCCTGTGCAACCTGCTTACTGTTCACG
AAGTCAGAATTGTAGGCGTTGCGCTGGAAGGGCTTGAGAATATTCTGCGT
GTGGGACAAAAGGAGAAGGAAACTGCCGGAGCTGACATGAACGAGTATGC
TCGCGACATTGAATCTGTCGGTGGCCTTGACAAGATTGAGACATTGCAGC
AGCACTCGAACCAAGATGTGTATGAGAAGGCCGTCCGGATTTTAGAAGTG
TTCTTCATGGCCGAGGAAGAAGAAGAGATTGAGGGAGTTGTCCCGGACAG
CGCAGAGACACAGTTTGGGTTTGGCGTCCAAAACCAGGCTCCGGAGGGTG
GTTTCAACTTTGGAAACCCGTCGGGCTTTGGCGGCCCTGGATGGGGTCAA
TAG

protein sequence of Gchil2882.t1

>Gchil2882.t1 ID=Gchil2882.t1|Name=Gchil2882.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=551bp
MSDRVTKQDLRKGRFKKAIDRDEARRQREDNLVGIRKSKREESLMKKRRE
RMSVNSTFATPADVDSQSTTDSNAPLALQYAQRLPAMVAGVYSEDPNQQV
QATLDFRRVLSIEKNPPIAEVISHNVVPRFVQFLKNDHNPQLQFEAAWSL
TNIASGTSAHTKVVIDSGAIPIFVYLLNSRYDDVREQAVWALGNIAGDSA
SCRDLVLEAGALHPLLVQLTGDSKVTMLRNATWTLSNFCRGKPPPDFEMV
RPALATLSHVLYYDDEEVLTDACWALSYLSDGNNDKITAVVESGVVKRLV
ELLLHQSVSVQTPALRTVGNIVTGDDMQTQFVINSAALPCLLSLLNSPKK
SIRKEACWTISNITAGNKDQIQAVMDANIIPPLIYTLSHADFDIKKEAAW
AISNATSGGTSQQIKFLVNNGAIEPLCNLLTVHEVRIVGVALEGLENILR
VGQKEKETAGADMNEYARDIESVGGLDKIETLQQHSNQDVYEKAVRILEV
FFMAEEEEEIEGVVPDSAETQFGFGVQNQAPEGGFNFGNPSGFGGPGWGQ
*

mRNA from alignment at tig00004406_pilon:1060050..1061702+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2882.t1 ID=Gchil2882.t1|Name=Gchil2882.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1653bp|location=Sequence derived from alignment at tig00004406_pilon:1060050..1061702+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTGACCGCGTCACCAAACAGGACCTTCGTAAAGGCCGCTTCAAGAA
GGCCATTGATCGCGATGAGGCCCGCCGCCAGCGCGAGGACAACCTCGTCG
GCATCCGCAAGTCCAAACGCGAGGAAAGCCTCATGAAGAAGCGTCGCGAA
CGCATGAGTGTCAACTCTACATTTGCCACTCCCGCCGATGTCGACTCGCA
GTCCACCACCGATTCCAACGCCCCGCTCGCCCTCCAGTACGCCCAGCGTC
TTCCGGCCATGGTGGCTGGTGTCTATTCGGAAGACCCCAATCAGCAGGTT
CAAGCCACCCTCGACTTTCGCCGCGTGCTCTCCATCGAGAAGAACCCCCC
CATCGCGGAGGTCATTTCCCACAATGTCGTCCCTCGCTTTGTCCAGTTTT
TGAAGAACGATCACAACCCCCAACTACAGTTTGAGGCCGCTTGGTCGCTC
ACAAACATTGCCTCCGGTACCTCGGCACACACTAAAGTCGTCATTGATAG
TGGTGCCATACCCATCTTTGTGTACTTGTTGAACTCACGCTATGATGATG
TTCGTGAGCAGGCTGTGTGGGCCCTTGGCAATATTGCCGGCGACTCGGCC
TCCTGCCGCGATCTTGTGCTGGAGGCGGGCGCCTTGCACCCTCTCCTTGT
ACAGCTCACCGGAGACTCCAAAGTCACCATGTTGAGGAACGCAACCTGGA
CTCTATCCAACTTCTGTCGTGGCAAGCCTCCACCAGACTTTGAGATGGTT
CGACCGGCTCTTGCCACTCTATCTCACGTGCTCTATTATGACGATGAGGA
AGTTCTAACCGACGCTTGTTGGGCCCTGTCCTATCTATCGGACGGAAACA
ATGATAAGATTACCGCCGTTGTGGAAAGTGGTGTCGTCAAGCGTTTGGTC
GAGCTTTTACTCCATCAGAGCGTCTCCGTCCAGACACCGGCGCTTCGCAC
CGTCGGCAACATTGTCACTGGCGACGATATGCAGACTCAGTTTGTCATCA
ACAGCGCTGCTCTTCCATGCCTGCTCAGCCTTCTCAACTCTCCTAAGAAG
TCTATTCGCAAGGAGGCGTGCTGGACTATATCCAACATCACTGCCGGAAA
TAAGGACCAAATTCAGGCCGTTATGGATGCCAATATCATTCCGCCTCTCA
TATACACGCTGTCTCATGCCGACTTTGATATCAAGAAGGAGGCTGCCTGG
GCCATATCCAACGCCACATCCGGGGGAACTTCTCAACAGATCAAGTTCCT
TGTCAATAACGGAGCTATTGAGCCCCTGTGCAACCTGCTTACTGTTCACG
AAGTCAGAATTGTAGGCGTTGCGCTGGAAGGGCTTGAGAATATTCTGCGT
GTGGGACAAAAGGAGAAGGAAACTGCCGGAGCTGACATGAACGAGTATGC
TCGCGACATTGAATCTGTCGGTGGCCTTGACAAGATTGAGACATTGCAGC
AGCACTCGAACCAAGATGTGTATGAGAAGGCCGTCCGGATTTTAGAAGTG
TTCTTCATGGCCGAGGAAGAAGAAGAGATTGAGGGAGTTGTCCCGGACAG
CGCAGAGACACAGTTTGGGTTTGGCGTCCAAAACCAGGCTCCGGAGGGTG
GTTTCAACTTTGGAAACCCGTCGGGCTTTGGCGGCCCTGGATGGGGTCAA
TAG

Coding sequence (CDS) from alignment at tig00004406_pilon:1060050..1061702+

>Gchil2882.t1 ID=Gchil2882.t1|Name=Gchil2882.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1653bp|location=Sequence derived from alignment at tig00004406_pilon:1060050..1061702+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTGACCGCGTCACCAAACAGGACCTTCGTAAAGGCCGCTTCAAGAA
GGCCATTGATCGCGATGAGGCCCGCCGCCAGCGCGAGGACAACCTCGTCG
GCATCCGCAAGTCCAAACGCGAGGAAAGCCTCATGAAGAAGCGTCGCGAA
CGCATGAGTGTCAACTCTACATTTGCCACTCCCGCCGATGTCGACTCGCA
GTCCACCACCGATTCCAACGCCCCGCTCGCCCTCCAGTACGCCCAGCGTC
TTCCGGCCATGGTGGCTGGTGTCTATTCGGAAGACCCCAATCAGCAGGTT
CAAGCCACCCTCGACTTTCGCCGCGTGCTCTCCATCGAGAAGAACCCCCC
CATCGCGGAGGTCATTTCCCACAATGTCGTCCCTCGCTTTGTCCAGTTTT
TGAAGAACGATCACAACCCCCAACTACAGTTTGAGGCCGCTTGGTCGCTC
ACAAACATTGCCTCCGGTACCTCGGCACACACTAAAGTCGTCATTGATAG
TGGTGCCATACCCATCTTTGTGTACTTGTTGAACTCACGCTATGATGATG
TTCGTGAGCAGGCTGTGTGGGCCCTTGGCAATATTGCCGGCGACTCGGCC
TCCTGCCGCGATCTTGTGCTGGAGGCGGGCGCCTTGCACCCTCTCCTTGT
ACAGCTCACCGGAGACTCCAAAGTCACCATGTTGAGGAACGCAACCTGGA
CTCTATCCAACTTCTGTCGTGGCAAGCCTCCACCAGACTTTGAGATGGTT
CGACCGGCTCTTGCCACTCTATCTCACGTGCTCTATTATGACGATGAGGA
AGTTCTAACCGACGCTTGTTGGGCCCTGTCCTATCTATCGGACGGAAACA
ATGATAAGATTACCGCCGTTGTGGAAAGTGGTGTCGTCAAGCGTTTGGTC
GAGCTTTTACTCCATCAGAGCGTCTCCGTCCAGACACCGGCGCTTCGCAC
CGTCGGCAACATTGTCACTGGCGACGATATGCAGACTCAGTTTGTCATCA
ACAGCGCTGCTCTTCCATGCCTGCTCAGCCTTCTCAACTCTCCTAAGAAG
TCTATTCGCAAGGAGGCGTGCTGGACTATATCCAACATCACTGCCGGAAA
TAAGGACCAAATTCAGGCCGTTATGGATGCCAATATCATTCCGCCTCTCA
TATACACGCTGTCTCATGCCGACTTTGATATCAAGAAGGAGGCTGCCTGG
GCCATATCCAACGCCACATCCGGGGGAACTTCTCAACAGATCAAGTTCCT
TGTCAATAACGGAGCTATTGAGCCCCTGTGCAACCTGCTTACTGTTCACG
AAGTCAGAATTGTAGGCGTTGCGCTGGAAGGGCTTGAGAATATTCTGCGT
GTGGGACAAAAGGAGAAGGAAACTGCCGGAGCTGACATGAACGAGTATGC
TCGCGACATTGAATCTGTCGGTGGCCTTGACAAGATTGAGACATTGCAGC
AGCACTCGAACCAAGATGTGTATGAGAAGGCCGTCCGGATTTTAGAAGTG
TTCTTCATGGCCGAGGAAGAAGAAGAGATTGAGGGAGTTGTCCCGGACAG
CGCAGAGACACAGTTTGGGTTTGGCGTCCAAAACCAGGCTCCGGAGGGTG
GTTTCAACTTTGGAAACCCGTCGGGCTTTGGCGGCCCTGGATGGGGTCAA
TAG