Gchil2874.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2874.t1
Unique Name	Gchil2874.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	755

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004406_pilon	contig	tig00004406_pilon:1040096..1042360 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	680198.SCAB_1971
Preferred name	pabB
PFAMs	Aminotran_4,Anth_synt_I_N,Chorismate_bind,GATase
Max annot lvl	201174\|Actinobacteria
KEGG rclass	RC00010,RC01418,RC01843,RC02148
KEGG ko	ko:K01665,ko:K03342,ko:K13950
KEGG Reaction	R01716,R05553
KEGG Pathway	ko00790,map00790
Evalue	7.01e-183
EggNOG OGs	COG0147@1\|root,COG0512@1\|root,COG0147@2\|Bacteria,COG0512@2\|Bacteria,2GKJT@201174\|Actinobacteria
EC	2.6.1.85,4.1.3.38
Description	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
COG category	EH
BRITE	ko00000,ko00001,ko01000,ko01007

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2874	Gchil2874	Gracilaria chilensis NLEC103_M9 male	gene	tig00004406_pilon 1040096..1042360 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2874.t1.start1	Gchil2874.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004406_pilon 1040096..1040098 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2874.t1.CDS1	Gchil2874.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004406_pilon 1040096..1042360 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2874.t1.exon1	Gchil2874.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004406_pilon 1040096..1042360 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2874.t1.stop1	Gchil2874.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004406_pilon 1042358..1042360 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2874.t1	Gchil2874.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004406_pilon 1040096..1042360 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004406_pilon:1040096..1042360+
coding sequence from alignment at tig00004406_pilon:1040096..1042360+

mRNA sequence

>Gchil2874.t1 ID=Gchil2874.t1|Name=Gchil2874.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=755bp
MSLRLALIDNYDSYTYILAHLVATANCNNPPQVFRSDAYSTLSDLHSAHG
MFDAFILSPGPGTPVKPRDFSPLQHEIVSGSIPTLAICLGHQGLCHHYGS
EIVHAPHGPRHGVISRVTKSSNECPLLRGIPYSFDVVRYHSLCVKPKSLP
QCLLPTLWTVDGDATVLMGVRHVNKPVFGLQFHPESVATNFGQQMANNFI
KLATVYRTTQPIYRSLTPTPQVCSPTFRTLVRSVDLLVSPLALFKCLYGD
VKQSFWLDSSTNATPSSRCSSPNPGEECTGLVDAHPARYSIMGACNGPFS
ELVTYDVSLHTTTVHQKSKKEILSISVFDYLKKALKNRQAEHNPELPIEM
NGGYVGFFGYEMKSDVDEAIESVHTSHLPDAWFVFADRLLIIDHIHDKLY
FVALARDGYLDDYRDGNTWFENMRSSVSTVLDGNGMFKGPSQGWDKVQSP
LRFIPERSRSQYLSDIRKCLKYIHDGESYEVCLTNRLRATLPHGFKQDPL
ELYSALRLVNPSPFSAFLRLDNDHAVCCSSPERYLQISSSGQVESKPIKG
TLPRGKTVEEDNNLRRQLQQSPKDRSENLMIVDLVRNDLSRMCEVGSVTV
PKLMCVESYATVHQLVSTVRGKLAPSCDPIDCVRGAYPMGSMTGAPKLRT
LEIIDRLEASARGIYSGSIGYLSVSGAVDLNVVIRTAVLNGPQVEIGVGG
AIVAMSSPKEEYEETILKGMAIMKALTLNETGNSDVIVVHEPQECIKVDR
IDES*

spliced messenger RNA

>Gchil2874.t1 ID=Gchil2874.t1|Name=Gchil2874.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2265bp|location=Sequence derived from alignment at tig00004406_pilon:1040096..1042360+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCTACGCCTGGCGCTTATAGACAACTACGATTCGTACACTTACAT
CCTTGCCCATCTTGTAGCAACCGCTAACTGCAACAATCCGCCACAAGTCT
TTCGCAGTGATGCATATTCAACACTTTCAGATCTGCATTCAGCGCATGGA
ATGTTTGATGCTTTCATTCTCTCCCCAGGCCCAGGAACCCCTGTGAAACC
TCGAGACTTTTCACCACTGCAGCATGAGATTGTGTCAGGTAGCATCCCCA
CTTTGGCTATCTGCCTCGGACATCAGGGCCTATGCCATCATTACGGTTCC
GAGATAGTTCACGCCCCGCATGGACCGCGACACGGCGTCATTTCTCGTGT
GACTAAGAGCTCAAATGAATGTCCACTGCTGCGCGGTATTCCATATTCAT
TTGACGTCGTGCGCTATCATAGCCTGTGCGTCAAACCAAAATCGCTTCCG
CAATGTTTACTTCCAACACTTTGGACTGTTGATGGGGACGCAACAGTTCT
TATGGGTGTGCGACATGTCAACAAGCCTGTCTTTGGGCTTCAGTTCCACC
CAGAATCAGTCGCCACAAACTTTGGGCAGCAAATGGCCAACAACTTTATT
AAATTGGCAACCGTTTATCGAACGACTCAACCCATCTACCGTTCGTTGAC
ACCTACACCACAGGTCTGCTCACCAACCTTTCGAACATTGGTCCGCAGTG
TGGATCTTCTCGTTTCGCCGTTGGCTCTTTTCAAATGCTTGTATGGGGAT
GTGAAGCAGTCCTTCTGGCTTGACAGCAGCACAAATGCCACACCTTCTTC
CCGATGCTCTTCTCCCAACCCCGGAGAAGAGTGCACGGGCCTTGTCGATG
CACACCCCGCTCGTTACTCAATAATGGGCGCTTGCAACGGACCGTTCTCA
GAACTTGTAACATACGATGTCTCCTTGCATACCACTACAGTTCACCAGAA
GAGCAAGAAAGAGATCCTTAGTATTTCGGTCTTTGACTACTTGAAGAAAG
CTCTCAAGAACCGCCAAGCTGAACATAATCCGGAGCTCCCAATAGAAATG
AACGGAGGATACGTGGGGTTTTTTGGATATGAGATGAAAAGTGATGTCGA
CGAGGCCATAGAAAGCGTCCACACGTCGCATTTACCAGACGCATGGTTCG
TGTTTGCGGATCGCCTCTTGATTATTGACCATATACATGACAAACTTTAT
TTCGTCGCTTTAGCGAGAGACGGCTATCTAGACGACTACAGAGACGGAAA
CACTTGGTTTGAGAATATGAGATCATCAGTGAGCACGGTGCTCGACGGAA
ACGGTATGTTCAAGGGCCCATCCCAAGGTTGGGATAAAGTGCAATCGCCC
TTGCGATTCATCCCTGAGAGAAGTCGAAGTCAGTACCTCTCAGACATTCG
AAAATGCCTGAAATATATACATGACGGAGAAAGCTATGAAGTCTGTCTCA
CCAACCGTTTGCGAGCAACTTTGCCTCATGGTTTTAAGCAAGACCCCTTG
GAACTATACAGCGCTTTGCGTCTGGTAAATCCTTCGCCATTCTCGGCTTT
CCTTAGACTTGACAATGATCATGCTGTTTGCTGTAGTTCACCTGAGCGAT
ATCTACAAATCTCATCCTCTGGTCAAGTGGAATCGAAGCCCATCAAAGGA
ACCCTTCCAAGAGGGAAAACAGTAGAAGAGGACAACAATCTTCGCCGTCA
ATTGCAACAGTCGCCGAAAGATCGTAGCGAGAATCTCATGATTGTTGACT
TAGTAAGAAATGACCTCAGCAGAATGTGCGAAGTTGGCTCAGTGACGGTA
CCAAAATTGATGTGCGTAGAATCATACGCAACTGTACATCAGCTTGTTAG
CACCGTTCGTGGGAAACTGGCCCCTTCATGCGACCCAATCGATTGTGTTC
GAGGGGCATACCCGATGGGCTCTATGACGGGGGCACCAAAGCTGCGAACC
TTGGAAATCATCGATCGTCTTGAAGCCTCTGCAAGAGGCATATATTCCGG
AAGCATCGGCTACCTTAGTGTGAGCGGGGCTGTGGACTTGAACGTTGTGA
TCCGAACGGCGGTGCTGAATGGCCCACAGGTAGAAATAGGAGTCGGTGGT
GCCATTGTGGCCATGAGTAGCCCAAAAGAAGAATACGAAGAAACAATTTT
GAAAGGAATGGCAATCATGAAGGCGCTAACCCTGAATGAAACTGGGAACA
GTGATGTTATTGTTGTTCACGAACCGCAAGAGTGTATTAAAGTTGATCGC
ATCGACGAAAGCTGA

protein sequence of Gchil2874.t1

>Gchil2874.t1 ID=Gchil2874.t1|Name=Gchil2874.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=755bp
MSLRLALIDNYDSYTYILAHLVATANCNNPPQVFRSDAYSTLSDLHSAHG
MFDAFILSPGPGTPVKPRDFSPLQHEIVSGSIPTLAICLGHQGLCHHYGS
EIVHAPHGPRHGVISRVTKSSNECPLLRGIPYSFDVVRYHSLCVKPKSLP
QCLLPTLWTVDGDATVLMGVRHVNKPVFGLQFHPESVATNFGQQMANNFI
KLATVYRTTQPIYRSLTPTPQVCSPTFRTLVRSVDLLVSPLALFKCLYGD
VKQSFWLDSSTNATPSSRCSSPNPGEECTGLVDAHPARYSIMGACNGPFS
ELVTYDVSLHTTTVHQKSKKEILSISVFDYLKKALKNRQAEHNPELPIEM
NGGYVGFFGYEMKSDVDEAIESVHTSHLPDAWFVFADRLLIIDHIHDKLY
FVALARDGYLDDYRDGNTWFENMRSSVSTVLDGNGMFKGPSQGWDKVQSP
LRFIPERSRSQYLSDIRKCLKYIHDGESYEVCLTNRLRATLPHGFKQDPL
ELYSALRLVNPSPFSAFLRLDNDHAVCCSSPERYLQISSSGQVESKPIKG
TLPRGKTVEEDNNLRRQLQQSPKDRSENLMIVDLVRNDLSRMCEVGSVTV
PKLMCVESYATVHQLVSTVRGKLAPSCDPIDCVRGAYPMGSMTGAPKLRT
LEIIDRLEASARGIYSGSIGYLSVSGAVDLNVVIRTAVLNGPQVEIGVGG
AIVAMSSPKEEYEETILKGMAIMKALTLNETGNSDVIVVHEPQECIKVDR
IDES*

mRNA from alignment at tig00004406_pilon:1040096..1042360+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2874.t1 ID=Gchil2874.t1|Name=Gchil2874.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2265bp|location=Sequence derived from alignment at tig00004406_pilon:1040096..1042360+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCTACGCCTGGCGCTTATAGACAACTACGATTCGTACACTTACAT
CCTTGCCCATCTTGTAGCAACCGCTAACTGCAACAATCCGCCACAAGTCT
TTCGCAGTGATGCATATTCAACACTTTCAGATCTGCATTCAGCGCATGGA
ATGTTTGATGCTTTCATTCTCTCCCCAGGCCCAGGAACCCCTGTGAAACC
TCGAGACTTTTCACCACTGCAGCATGAGATTGTGTCAGGTAGCATCCCCA
CTTTGGCTATCTGCCTCGGACATCAGGGCCTATGCCATCATTACGGTTCC
GAGATAGTTCACGCCCCGCATGGACCGCGACACGGCGTCATTTCTCGTGT
GACTAAGAGCTCAAATGAATGTCCACTGCTGCGCGGTATTCCATATTCAT
TTGACGTCGTGCGCTATCATAGCCTGTGCGTCAAACCAAAATCGCTTCCG
CAATGTTTACTTCCAACACTTTGGACTGTTGATGGGGACGCAACAGTTCT
TATGGGTGTGCGACATGTCAACAAGCCTGTCTTTGGGCTTCAGTTCCACC
CAGAATCAGTCGCCACAAACTTTGGGCAGCAAATGGCCAACAACTTTATT
AAATTGGCAACCGTTTATCGAACGACTCAACCCATCTACCGTTCGTTGAC
ACCTACACCACAGGTCTGCTCACCAACCTTTCGAACATTGGTCCGCAGTG
TGGATCTTCTCGTTTCGCCGTTGGCTCTTTTCAAATGCTTGTATGGGGAT
GTGAAGCAGTCCTTCTGGCTTGACAGCAGCACAAATGCCACACCTTCTTC
CCGATGCTCTTCTCCCAACCCCGGAGAAGAGTGCACGGGCCTTGTCGATG
CACACCCCGCTCGTTACTCAATAATGGGCGCTTGCAACGGACCGTTCTCA
GAACTTGTAACATACGATGTCTCCTTGCATACCACTACAGTTCACCAGAA
GAGCAAGAAAGAGATCCTTAGTATTTCGGTCTTTGACTACTTGAAGAAAG
CTCTCAAGAACCGCCAAGCTGAACATAATCCGGAGCTCCCAATAGAAATG
AACGGAGGATACGTGGGGTTTTTTGGATATGAGATGAAAAGTGATGTCGA
CGAGGCCATAGAAAGCGTCCACACGTCGCATTTACCAGACGCATGGTTCG
TGTTTGCGGATCGCCTCTTGATTATTGACCATATACATGACAAACTTTAT
TTCGTCGCTTTAGCGAGAGACGGCTATCTAGACGACTACAGAGACGGAAA
CACTTGGTTTGAGAATATGAGATCATCAGTGAGCACGGTGCTCGACGGAA
ACGGTATGTTCAAGGGCCCATCCCAAGGTTGGGATAAAGTGCAATCGCCC
TTGCGATTCATCCCTGAGAGAAGTCGAAGTCAGTACCTCTCAGACATTCG
AAAATGCCTGAAATATATACATGACGGAGAAAGCTATGAAGTCTGTCTCA
CCAACCGTTTGCGAGCAACTTTGCCTCATGGTTTTAAGCAAGACCCCTTG
GAACTATACAGCGCTTTGCGTCTGGTAAATCCTTCGCCATTCTCGGCTTT
CCTTAGACTTGACAATGATCATGCTGTTTGCTGTAGTTCACCTGAGCGAT
ATCTACAAATCTCATCCTCTGGTCAAGTGGAATCGAAGCCCATCAAAGGA
ACCCTTCCAAGAGGGAAAACAGTAGAAGAGGACAACAATCTTCGCCGTCA
ATTGCAACAGTCGCCGAAAGATCGTAGCGAGAATCTCATGATTGTTGACT
TAGTAAGAAATGACCTCAGCAGAATGTGCGAAGTTGGCTCAGTGACGGTA
CCAAAATTGATGTGCGTAGAATCATACGCAACTGTACATCAGCTTGTTAG
CACCGTTCGTGGGAAACTGGCCCCTTCATGCGACCCAATCGATTGTGTTC
GAGGGGCATACCCGATGGGCTCTATGACGGGGGCACCAAAGCTGCGAACC
TTGGAAATCATCGATCGTCTTGAAGCCTCTGCAAGAGGCATATATTCCGG
AAGCATCGGCTACCTTAGTGTGAGCGGGGCTGTGGACTTGAACGTTGTGA
TCCGAACGGCGGTGCTGAATGGCCCACAGGTAGAAATAGGAGTCGGTGGT
GCCATTGTGGCCATGAGTAGCCCAAAAGAAGAATACGAAGAAACAATTTT
GAAAGGAATGGCAATCATGAAGGCGCTAACCCTGAATGAAACTGGGAACA
GTGATGTTATTGTTGTTCACGAACCGCAAGAGTGTATTAAAGTTGATCGC
ATCGACGAAAGCTGA

Coding sequence (CDS) from alignment at tig00004406_pilon:1040096..1042360+

>Gchil2874.t1 ID=Gchil2874.t1|Name=Gchil2874.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2265bp|location=Sequence derived from alignment at tig00004406_pilon:1040096..1042360+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCTACGCCTGGCGCTTATAGACAACTACGATTCGTACACTTACAT
CCTTGCCCATCTTGTAGCAACCGCTAACTGCAACAATCCGCCACAAGTCT
TTCGCAGTGATGCATATTCAACACTTTCAGATCTGCATTCAGCGCATGGA
ATGTTTGATGCTTTCATTCTCTCCCCAGGCCCAGGAACCCCTGTGAAACC
TCGAGACTTTTCACCACTGCAGCATGAGATTGTGTCAGGTAGCATCCCCA
CTTTGGCTATCTGCCTCGGACATCAGGGCCTATGCCATCATTACGGTTCC
GAGATAGTTCACGCCCCGCATGGACCGCGACACGGCGTCATTTCTCGTGT
GACTAAGAGCTCAAATGAATGTCCACTGCTGCGCGGTATTCCATATTCAT
TTGACGTCGTGCGCTATCATAGCCTGTGCGTCAAACCAAAATCGCTTCCG
CAATGTTTACTTCCAACACTTTGGACTGTTGATGGGGACGCAACAGTTCT
TATGGGTGTGCGACATGTCAACAAGCCTGTCTTTGGGCTTCAGTTCCACC
CAGAATCAGTCGCCACAAACTTTGGGCAGCAAATGGCCAACAACTTTATT
AAATTGGCAACCGTTTATCGAACGACTCAACCCATCTACCGTTCGTTGAC
ACCTACACCACAGGTCTGCTCACCAACCTTTCGAACATTGGTCCGCAGTG
TGGATCTTCTCGTTTCGCCGTTGGCTCTTTTCAAATGCTTGTATGGGGAT
GTGAAGCAGTCCTTCTGGCTTGACAGCAGCACAAATGCCACACCTTCTTC
CCGATGCTCTTCTCCCAACCCCGGAGAAGAGTGCACGGGCCTTGTCGATG
CACACCCCGCTCGTTACTCAATAATGGGCGCTTGCAACGGACCGTTCTCA
GAACTTGTAACATACGATGTCTCCTTGCATACCACTACAGTTCACCAGAA
GAGCAAGAAAGAGATCCTTAGTATTTCGGTCTTTGACTACTTGAAGAAAG
CTCTCAAGAACCGCCAAGCTGAACATAATCCGGAGCTCCCAATAGAAATG
AACGGAGGATACGTGGGGTTTTTTGGATATGAGATGAAAAGTGATGTCGA
CGAGGCCATAGAAAGCGTCCACACGTCGCATTTACCAGACGCATGGTTCG
TGTTTGCGGATCGCCTCTTGATTATTGACCATATACATGACAAACTTTAT
TTCGTCGCTTTAGCGAGAGACGGCTATCTAGACGACTACAGAGACGGAAA
CACTTGGTTTGAGAATATGAGATCATCAGTGAGCACGGTGCTCGACGGAA
ACGGTATGTTCAAGGGCCCATCCCAAGGTTGGGATAAAGTGCAATCGCCC
TTGCGATTCATCCCTGAGAGAAGTCGAAGTCAGTACCTCTCAGACATTCG
AAAATGCCTGAAATATATACATGACGGAGAAAGCTATGAAGTCTGTCTCA
CCAACCGTTTGCGAGCAACTTTGCCTCATGGTTTTAAGCAAGACCCCTTG
GAACTATACAGCGCTTTGCGTCTGGTAAATCCTTCGCCATTCTCGGCTTT
CCTTAGACTTGACAATGATCATGCTGTTTGCTGTAGTTCACCTGAGCGAT
ATCTACAAATCTCATCCTCTGGTCAAGTGGAATCGAAGCCCATCAAAGGA
ACCCTTCCAAGAGGGAAAACAGTAGAAGAGGACAACAATCTTCGCCGTCA
ATTGCAACAGTCGCCGAAAGATCGTAGCGAGAATCTCATGATTGTTGACT
TAGTAAGAAATGACCTCAGCAGAATGTGCGAAGTTGGCTCAGTGACGGTA
CCAAAATTGATGTGCGTAGAATCATACGCAACTGTACATCAGCTTGTTAG
CACCGTTCGTGGGAAACTGGCCCCTTCATGCGACCCAATCGATTGTGTTC
GAGGGGCATACCCGATGGGCTCTATGACGGGGGCACCAAAGCTGCGAACC
TTGGAAATCATCGATCGTCTTGAAGCCTCTGCAAGAGGCATATATTCCGG
AAGCATCGGCTACCTTAGTGTGAGCGGGGCTGTGGACTTGAACGTTGTGA
TCCGAACGGCGGTGCTGAATGGCCCACAGGTAGAAATAGGAGTCGGTGGT
GCCATTGTGGCCATGAGTAGCCCAAAAGAAGAATACGAAGAAACAATTTT
GAAAGGAATGGCAATCATGAAGGCGCTAACCCTGAATGAAACTGGGAACA
GTGATGTTATTGTTGTTCACGAACCGCAAGAGTGTATTAAAGTTGATCGC
ATCGACGAAAGCTGA