Gchil2873.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2873.t1
Unique NameGchil2873.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length598
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004406_piloncontigtig00004406_pilon:1037612..1039526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog227086.JGI_V11_41236
PFAMsABC_membrane_2,ABC_tran,PWWP
Max annot lvl2759|Eukaryota
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Evalue7.87e-166
EggNOG OGsCOG4178@1|root,KOG0060@2759|Eukaryota
DescriptionATP-binding cassette sub-family D
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2873Gchil2873Gracilaria chilensis NLEC103_M9 malegenetig00004406_pilon 1037612..1039526 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2873.t1Gchil2873.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004406_pilon 1037612..1039526 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2873.t1.stop1Gchil2873.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004406_pilon 1037612..1037614 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2873.t1.CDS1Gchil2873.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 1037612..1039324 -
Gchil2873.t1.CDS2Gchil2873.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 1039446..1039526 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2873.t1.exon1Gchil2873.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 1037612..1039324 -
Gchil2873.t1.exon2Gchil2873.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 1039446..1039526 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2873.t1.intron1Gchil2873.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004406_pilon 1039325..1039445 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2873.t1.start1Gchil2873.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004406_pilon 1039524..1039526 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2873.t1 ID=Gchil2873.t1|Name=Gchil2873.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=598bp
MAPMCYTKSTAESKQKNNTKMLSAECRAEKQARRDFAGVVALTFLQSGVS
VLFSFVSRDFWTALNTKNTELFYHQAEIFFITLVAFTPVVVYYQYFRDRC
ALRWRDWITEKVLNQYCANRNFYTLEAVDNPDQRIAQDLNSFTTESIALV
LTLLVSAIDLVSFSAILFSIYPYLFVVLLVYATTGTYLTAVLGKRLIGLN
YNQIVSEANLRYGLIRMRENAESIAFFNGEQRERVEINRRLKLAIDNMGE
VINLRKQVGFLQTGYKYAVRILPAICVAPRYFSGAIELGSVTQSFSAFSH
ILDDLSLVVNRFDSLSQFGAGIDRLAQFVQALEENIEEEKKTFGTHSERA
PTQGRGHRGGIILNRIPGRTRSLSVQNLTLFTPDDAMPRKLIENLSFTLS
PGERLLVCGPSGNGKSSLLRAIAGLWTNGSGSVTCPDENGLFFLPQKPYC
TLGSLRDNLVYPKDSKTSDIADGALLRALDLVHLAKLPSRMGGLDAVMEW
GEVLSLGEQQRLQFARLFLSGTGMAIIDEGTSALSVQIEKEMYDLVTGMG
ATVVSVGHRPTLLGYHDRILRLRVGLWELDDITQKERDEVVSQPLCS*
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spliced messenger RNA

>Gchil2873.t1 ID=Gchil2873.t1|Name=Gchil2873.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1794bp|location=Sequence derived from alignment at tig00004406_pilon:1037612..1039526- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACCGATGTGTTACACGAAGAGTACCGCTGAATCTAAGCAGAAGAA
TAATACCAAGATGCTCAGTGCAGAATGCAGGGCAGAAAAGCAGGCTAGAC
GAGATTTTGCTGGCGTCGTTGCTCTCACCTTTCTCCAATCTGGTGTCTCA
GTCCTATTCTCTTTTGTGTCGCGGGACTTTTGGACAGCGTTGAACACGAA
AAACACAGAACTCTTCTATCATCAGGCTGAAATCTTTTTTATCACACTAG
TCGCATTTACCCCTGTTGTGGTATACTATCAATACTTTCGTGACAGGTGC
GCACTGCGTTGGCGAGACTGGATAACGGAAAAAGTTCTGAACCAGTATTG
CGCCAATCGTAACTTCTATACACTTGAGGCAGTCGACAATCCTGACCAAC
GTATTGCCCAAGATCTCAACTCCTTTACAACTGAATCAATCGCTCTCGTA
CTGACTTTGCTCGTGTCGGCAATCGACTTGGTTTCGTTTTCTGCTATCTT
GTTTTCCATTTATCCTTATCTGTTTGTTGTTCTTCTCGTGTACGCCACGA
CTGGCACATACCTAACAGCAGTTCTTGGAAAACGCCTTATAGGTCTTAAC
TATAACCAAATTGTTAGCGAAGCTAACTTGCGCTATGGACTTATTCGAAT
GCGAGAGAATGCGGAGAGTATAGCCTTCTTCAACGGTGAGCAAAGGGAAC
GAGTTGAGATCAATCGCCGTTTGAAGTTAGCCATCGATAATATGGGAGAG
GTTATTAATCTTCGAAAGCAAGTAGGATTCCTGCAAACTGGATACAAATA
CGCCGTTCGTATACTACCAGCCATCTGTGTCGCTCCAAGGTACTTTTCGG
GAGCCATAGAGCTAGGAAGCGTGACGCAAAGCTTCAGCGCGTTTTCACAT
ATCCTTGACGATCTTAGTCTTGTTGTCAACCGTTTTGATAGTTTAAGCCA
GTTTGGAGCGGGCATTGACCGGCTCGCTCAATTTGTACAAGCACTTGAAG
AAAACATTGAAGAAGAAAAGAAGACGTTCGGCACCCATTCCGAAAGGGCT
CCTACCCAGGGTCGTGGACATCGTGGTGGCATTATCCTGAACAGGATACC
AGGACGGACAAGATCACTGTCAGTGCAAAACCTCACTTTGTTTACCCCTG
ATGACGCGATGCCGAGAAAACTAATTGAGAACTTATCGTTTACACTCTCG
CCGGGCGAGCGTTTGCTGGTGTGTGGGCCATCGGGCAACGGGAAGTCGTC
TCTTCTCAGAGCTATCGCAGGATTGTGGACTAACGGATCGGGCTCAGTCA
CATGCCCTGATGAAAATGGATTATTCTTTCTTCCACAAAAGCCTTATTGC
ACGTTAGGGTCCTTGCGTGACAACCTAGTTTACCCCAAAGATTCAAAGAC
ATCAGATATAGCAGACGGTGCCCTCCTTCGTGCATTAGATCTCGTTCATT
TGGCCAAGTTGCCGTCGAGAATGGGAGGTTTAGATGCTGTGATGGAATGG
GGGGAGGTACTGAGTTTAGGTGAGCAACAACGACTCCAATTTGCTCGATT
ATTTCTTTCAGGAACAGGAATGGCTATTATCGATGAAGGTACAAGTGCTT
TAAGTGTTCAAATTGAAAAGGAAATGTACGATTTAGTGACAGGAATGGGT
GCAACAGTTGTCAGTGTTGGTCATCGTCCCACATTGTTGGGTTACCATGA
TAGAATCCTGAGGCTTCGTGTCGGTTTGTGGGAGCTGGATGACATCACAC
AGAAAGAACGTGATGAAGTCGTCTCACAACCTCTCTGTTCATGA
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protein sequence of Gchil2873.t1

>Gchil2873.t1 ID=Gchil2873.t1|Name=Gchil2873.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=598bp
MAPMCYTKSTAESKQKNNTKMLSAECRAEKQARRDFAGVVALTFLQSGVS
VLFSFVSRDFWTALNTKNTELFYHQAEIFFITLVAFTPVVVYYQYFRDRC
ALRWRDWITEKVLNQYCANRNFYTLEAVDNPDQRIAQDLNSFTTESIALV
LTLLVSAIDLVSFSAILFSIYPYLFVVLLVYATTGTYLTAVLGKRLIGLN
YNQIVSEANLRYGLIRMRENAESIAFFNGEQRERVEINRRLKLAIDNMGE
VINLRKQVGFLQTGYKYAVRILPAICVAPRYFSGAIELGSVTQSFSAFSH
ILDDLSLVVNRFDSLSQFGAGIDRLAQFVQALEENIEEEKKTFGTHSERA
PTQGRGHRGGIILNRIPGRTRSLSVQNLTLFTPDDAMPRKLIENLSFTLS
PGERLLVCGPSGNGKSSLLRAIAGLWTNGSGSVTCPDENGLFFLPQKPYC
TLGSLRDNLVYPKDSKTSDIADGALLRALDLVHLAKLPSRMGGLDAVMEW
GEVLSLGEQQRLQFARLFLSGTGMAIIDEGTSALSVQIEKEMYDLVTGMG
ATVVSVGHRPTLLGYHDRILRLRVGLWELDDITQKERDEVVSQPLCS*
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mRNA from alignment at tig00004406_pilon:1037612..1039526-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2873.t1 ID=Gchil2873.t1|Name=Gchil2873.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1915bp|location=Sequence derived from alignment at tig00004406_pilon:1037612..1039526- (Gracilaria chilensis NLEC103_M9 male)
ATGGCACCGATGTGTTACACGAAGAGTACCGCTGAATCTAAGCAGAAGAA
TAATACCAAGATGCTCAGTGCAGAATGCAGGGTCCTCTACAGATGCCGTC
AAAAGCGAAACACAAGCGAATGAATCAGACGCAGAGCGGAAACGACGGGA
GGTTGGCCGCCTGTTGTCACTCTTTTCTCGCTTGGCGCTTCCATACTGGA
AGGCAGAAAAGCAGGCTAGACGAGATTTTGCTGGCGTCGTTGCTCTCACC
TTTCTCCAATCTGGTGTCTCAGTCCTATTCTCTTTTGTGTCGCGGGACTT
TTGGACAGCGTTGAACACGAAAAACACAGAACTCTTCTATCATCAGGCTG
AAATCTTTTTTATCACACTAGTCGCATTTACCCCTGTTGTGGTATACTAT
CAATACTTTCGTGACAGGTGCGCACTGCGTTGGCGAGACTGGATAACGGA
AAAAGTTCTGAACCAGTATTGCGCCAATCGTAACTTCTATACACTTGAGG
CAGTCGACAATCCTGACCAACGTATTGCCCAAGATCTCAACTCCTTTACA
ACTGAATCAATCGCTCTCGTACTGACTTTGCTCGTGTCGGCAATCGACTT
GGTTTCGTTTTCTGCTATCTTGTTTTCCATTTATCCTTATCTGTTTGTTG
TTCTTCTCGTGTACGCCACGACTGGCACATACCTAACAGCAGTTCTTGGA
AAACGCCTTATAGGTCTTAACTATAACCAAATTGTTAGCGAAGCTAACTT
GCGCTATGGACTTATTCGAATGCGAGAGAATGCGGAGAGTATAGCCTTCT
TCAACGGTGAGCAAAGGGAACGAGTTGAGATCAATCGCCGTTTGAAGTTA
GCCATCGATAATATGGGAGAGGTTATTAATCTTCGAAAGCAAGTAGGATT
CCTGCAAACTGGATACAAATACGCCGTTCGTATACTACCAGCCATCTGTG
TCGCTCCAAGGTACTTTTCGGGAGCCATAGAGCTAGGAAGCGTGACGCAA
AGCTTCAGCGCGTTTTCACATATCCTTGACGATCTTAGTCTTGTTGTCAA
CCGTTTTGATAGTTTAAGCCAGTTTGGAGCGGGCATTGACCGGCTCGCTC
AATTTGTACAAGCACTTGAAGAAAACATTGAAGAAGAAAAGAAGACGTTC
GGCACCCATTCCGAAAGGGCTCCTACCCAGGGTCGTGGACATCGTGGTGG
CATTATCCTGAACAGGATACCAGGACGGACAAGATCACTGTCAGTGCAAA
ACCTCACTTTGTTTACCCCTGATGACGCGATGCCGAGAAAACTAATTGAG
AACTTATCGTTTACACTCTCGCCGGGCGAGCGTTTGCTGGTGTGTGGGCC
ATCGGGCAACGGGAAGTCGTCTCTTCTCAGAGCTATCGCAGGATTGTGGA
CTAACGGATCGGGCTCAGTCACATGCCCTGATGAAAATGGATTATTCTTT
CTTCCACAAAAGCCTTATTGCACGTTAGGGTCCTTGCGTGACAACCTAGT
TTACCCCAAAGATTCAAAGACATCAGATATAGCAGACGGTGCCCTCCTTC
GTGCATTAGATCTCGTTCATTTGGCCAAGTTGCCGTCGAGAATGGGAGGT
TTAGATGCTGTGATGGAATGGGGGGAGGTACTGAGTTTAGGTGAGCAACA
ACGACTCCAATTTGCTCGATTATTTCTTTCAGGAACAGGAATGGCTATTA
TCGATGAAGGTACAAGTGCTTTAAGTGTTCAAATTGAAAAGGAAATGTAC
GATTTAGTGACAGGAATGGGTGCAACAGTTGTCAGTGTTGGTCATCGTCC
CACATTGTTGGGTTACCATGATAGAATCCTGAGGCTTCGTGTCGGTTTGT
GGGAGCTGGATGACATCACACAGAAAGAACGTGATGAAGTCGTCTCACAA
CCTCTCTGTTCATGA
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Coding sequence (CDS) from alignment at tig00004406_pilon:1037612..1039526-

>Gchil2873.t1 ID=Gchil2873.t1|Name=Gchil2873.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1794bp|location=Sequence derived from alignment at tig00004406_pilon:1037612..1039526- (Gracilaria chilensis NLEC103_M9 male)
ATGGCACCGATGTGTTACACGAAGAGTACCGCTGAATCTAAGCAGAAGAA
TAATACCAAGATGCTCAGTGCAGAATGCAGGGCAGAAAAGCAGGCTAGAC
GAGATTTTGCTGGCGTCGTTGCTCTCACCTTTCTCCAATCTGGTGTCTCA
GTCCTATTCTCTTTTGTGTCGCGGGACTTTTGGACAGCGTTGAACACGAA
AAACACAGAACTCTTCTATCATCAGGCTGAAATCTTTTTTATCACACTAG
TCGCATTTACCCCTGTTGTGGTATACTATCAATACTTTCGTGACAGGTGC
GCACTGCGTTGGCGAGACTGGATAACGGAAAAAGTTCTGAACCAGTATTG
CGCCAATCGTAACTTCTATACACTTGAGGCAGTCGACAATCCTGACCAAC
GTATTGCCCAAGATCTCAACTCCTTTACAACTGAATCAATCGCTCTCGTA
CTGACTTTGCTCGTGTCGGCAATCGACTTGGTTTCGTTTTCTGCTATCTT
GTTTTCCATTTATCCTTATCTGTTTGTTGTTCTTCTCGTGTACGCCACGA
CTGGCACATACCTAACAGCAGTTCTTGGAAAACGCCTTATAGGTCTTAAC
TATAACCAAATTGTTAGCGAAGCTAACTTGCGCTATGGACTTATTCGAAT
GCGAGAGAATGCGGAGAGTATAGCCTTCTTCAACGGTGAGCAAAGGGAAC
GAGTTGAGATCAATCGCCGTTTGAAGTTAGCCATCGATAATATGGGAGAG
GTTATTAATCTTCGAAAGCAAGTAGGATTCCTGCAAACTGGATACAAATA
CGCCGTTCGTATACTACCAGCCATCTGTGTCGCTCCAAGGTACTTTTCGG
GAGCCATAGAGCTAGGAAGCGTGACGCAAAGCTTCAGCGCGTTTTCACAT
ATCCTTGACGATCTTAGTCTTGTTGTCAACCGTTTTGATAGTTTAAGCCA
GTTTGGAGCGGGCATTGACCGGCTCGCTCAATTTGTACAAGCACTTGAAG
AAAACATTGAAGAAGAAAAGAAGACGTTCGGCACCCATTCCGAAAGGGCT
CCTACCCAGGGTCGTGGACATCGTGGTGGCATTATCCTGAACAGGATACC
AGGACGGACAAGATCACTGTCAGTGCAAAACCTCACTTTGTTTACCCCTG
ATGACGCGATGCCGAGAAAACTAATTGAGAACTTATCGTTTACACTCTCG
CCGGGCGAGCGTTTGCTGGTGTGTGGGCCATCGGGCAACGGGAAGTCGTC
TCTTCTCAGAGCTATCGCAGGATTGTGGACTAACGGATCGGGCTCAGTCA
CATGCCCTGATGAAAATGGATTATTCTTTCTTCCACAAAAGCCTTATTGC
ACGTTAGGGTCCTTGCGTGACAACCTAGTTTACCCCAAAGATTCAAAGAC
ATCAGATATAGCAGACGGTGCCCTCCTTCGTGCATTAGATCTCGTTCATT
TGGCCAAGTTGCCGTCGAGAATGGGAGGTTTAGATGCTGTGATGGAATGG
GGGGAGGTACTGAGTTTAGGTGAGCAACAACGACTCCAATTTGCTCGATT
ATTTCTTTCAGGAACAGGAATGGCTATTATCGATGAAGGTACAAGTGCTT
TAAGTGTTCAAATTGAAAAGGAAATGTACGATTTAGTGACAGGAATGGGT
GCAACAGTTGTCAGTGTTGGTCATCGTCCCACATTGTTGGGTTACCATGA
TAGAATCCTGAGGCTTCGTGTCGGTTTGTGGGAGCTGGATGACATCACAC
AGAAAGAACGTGATGAAGTCGTCTCACAACCTCTCTGTTCATGA
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