Gchil2869.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2869.t1
Unique Name	Gchil2869.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	762

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004406_pilon	contig	tig00004406_pilon:1022229..1024514 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2869	Gchil2869	Gracilaria chilensis NLEC103_M9 male	gene	tig00004406_pilon 1022229..1024514 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2869.t1.start1	Gchil2869.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004406_pilon 1022229..1022231 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2869.t1.CDS1	Gchil2869.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004406_pilon 1022229..1024514 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2869.t1.exon1	Gchil2869.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004406_pilon 1022229..1024514 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2869.t1.stop1	Gchil2869.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004406_pilon 1024512..1024514 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2869.t1	Gchil2869.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004406_pilon 1022229..1024514 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004406_pilon:1022229..1024514+
coding sequence from alignment at tig00004406_pilon:1022229..1024514+

mRNA sequence

>Gchil2869.t1 ID=Gchil2869.t1|Name=Gchil2869.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=762bp
MRLFACFTRSNAVDTPPRPHSRPPSERKTRDPIPPDTFVPTSIPELHPEY
AHAEPYRFAARTQSARLLVEKQREAQALSISPRRRLPVEEQTVVVRGPAY
NAQTVALAHPTPPLTTYNASKPSRPVSLKVETPTTADENYIDSDDTTGRD
ENADVNRSTASPRSPHRKSAASNTSLSPSKSKRNIKSTSRKARKSSVIQS
KPNSFRIRSKSSKSFKHSKRRTPTHTRNNSDPSGSVSDVVVSQSVSHVPT
SVTNSSLPSPPDSEFEAAHDSSFIEAHIRPHLDNTPPELLEPIPVPRMSA
AFHAKHLGSPAVSTDSWGPQDSSSQRRYEDVEGDSSSGLVSVPPIGKQKV
VHMANYPSKAPELPSYAPPSPLHTSSPTVANRVRSKRKSKPYVSENPDSH
RAPPVDERVPAADLPIDPFPLSKSRRSIMSNDPAPTREIPRIVHRAARDR
IRSDESFPPPGPSQPLTGAQPQSIMRRASSGKRKTVSFHTAAPTIIEPKL
RAPSHSVPRDALLSREEVQPEVPARLAPALRNTRDSIKVASSSLPRLHDT
YDGLSSQHDEGLASQKSMVRSVSARTLSEKEPISHPNFTRPEAIQTGASR
TSQTNPGTGTSLPVVEDSSTPNDRNMSDFSAGSDESFITRASRRMSTRVV
KDREELREASRRQSRAVAEAMASQIRGIPKSAMLAFSENDIVLADGFEEE
DSSSRTSLRRKSRQVKSVQLPSIQPGVVPKPPPPPPFAPSPRRAKSVRVP
PPPPVSPLSYY*

spliced messenger RNA

>Gchil2869.t1 ID=Gchil2869.t1|Name=Gchil2869.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2286bp|location=Sequence derived from alignment at tig00004406_pilon:1022229..1024514+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTCTCTTTGCCTGCTTCACTCGCTCCAATGCAGTAGATACACCGCC
TCGACCGCATTCCCGACCTCCTTCCGAACGCAAAACTCGAGACCCCATCC
CTCCCGACACCTTCGTCCCCACCTCTATCCCCGAACTGCACCCCGAATAT
GCACATGCTGAGCCGTACCGTTTCGCTGCGAGGACGCAGAGCGCTCGCTT
GCTAGTCGAGAAGCAACGTGAGGCGCAAGCGCTGTCCATATCCCCGCGCC
GTCGACTCCCTGTTGAAGAACAAACCGTCGTTGTCAGAGGCCCTGCGTAC
AACGCCCAAACCGTTGCTCTCGCACATCCCACCCCTCCCCTCACTACATA
CAACGCTTCAAAACCTTCTCGCCCGGTCTCGCTCAAGGTGGAAACCCCGA
CCACTGCAGACGAGAACTATATCGACAGCGACGATACAACAGGCCGCGAC
GAAAACGCCGATGTCAACCGATCCACTGCTTCGCCTCGCTCCCCACATCG
CAAGTCTGCCGCTTCGAACACCTCGTTGAGCCCGTCCAAGTCCAAGCGCA
ACATCAAGTCAACGTCAAGGAAAGCCCGGAAGAGCTCGGTCATACAATCG
AAACCAAATTCCTTCCGTATTCGTTCCAAGTCCAGCAAGTCCTTCAAGCA
TAGCAAACGGAGAACCCCCACTCACACGCGTAACAACTCTGACCCGTCTG
GTTCCGTATCTGATGTCGTCGTATCACAGTCCGTATCCCATGTCCCGACT
TCGGTAACAAATTCGAGCCTCCCATCCCCACCCGATTCAGAGTTTGAGGC
AGCACATGATTCGTCTTTCATTGAAGCTCACATCAGACCGCATCTGGATA
ATACACCCCCGGAGCTACTCGAACCCATCCCCGTCCCCCGAATGAGCGCT
GCATTCCATGCAAAGCACTTAGGGTCTCCCGCTGTTTCAACGGATTCATG
GGGGCCGCAGGATTCATCCTCGCAGCGTCGCTATGAGGACGTTGAAGGCG
ACTCTTCTTCCGGGCTTGTTTCCGTCCCCCCTATCGGAAAACAGAAGGTT
GTGCATATGGCCAATTACCCTTCCAAAGCACCAGAGCTCCCTTCCTATGC
GCCTCCATCTCCCTTACACACGTCCTCTCCCACCGTAGCTAACCGAGTGC
GTTCGAAGAGGAAGAGCAAGCCTTATGTCTCAGAAAATCCAGACTCGCAC
AGAGCGCCACCTGTTGACGAGAGGGTGCCGGCGGCGGACTTGCCGATTGA
TCCGTTCCCTCTATCAAAGTCTAGACGATCCATCATGTCCAATGACCCTG
CTCCAACCAGGGAGATTCCGAGGATAGTACACAGGGCAGCTCGCGACCGT
ATTCGCTCAGATGAGTCGTTTCCACCTCCGGGGCCGTCACAGCCTCTGAC
CGGCGCCCAGCCCCAGAGTATTATGAGACGTGCTTCTTCGGGCAAACGCA
AGACGGTCAGTTTTCACACCGCGGCCCCTACTATAATTGAGCCAAAGTTG
CGCGCTCCCAGCCACTCCGTGCCGCGTGACGCCCTTCTGTCGAGGGAAGA
AGTTCAACCTGAGGTTCCAGCAAGACTCGCACCGGCTCTGCGGAATACTC
GTGACTCGATTAAGGTTGCGTCTTCATCACTACCGCGCCTTCATGACACC
TACGATGGTCTTTCCTCCCAACATGACGAAGGTTTAGCATCCCAGAAATC
TATGGTACGATCGGTCTCAGCGCGAACTCTTTCAGAAAAGGAACCTATCT
CTCACCCGAACTTTACGCGTCCGGAGGCAATTCAAACTGGTGCCTCGCGA
ACGAGCCAAACGAATCCGGGAACCGGCACCTCTTTGCCAGTAGTGGAGGA
TAGTTCGACCCCAAACGACCGAAACATGAGCGACTTCAGTGCGGGCTCTG
ATGAGAGTTTCATCACCCGAGCTTCACGACGGATGTCAACTCGAGTGGTC
AAAGATCGTGAGGAGCTTCGTGAAGCATCCAGACGCCAATCCAGAGCTGT
TGCTGAGGCAATGGCGTCGCAGATTCGAGGCATCCCGAAGAGCGCCATGC
TTGCGTTCTCCGAAAACGACATTGTGTTAGCAGATGGTTTCGAGGAAGAG
GATTCCTCTAGCCGCACCTCGCTCAGGAGAAAGTCGAGGCAGGTGAAGAG
TGTTCAACTCCCTTCGATTCAGCCAGGTGTGGTCCCGAAGCCACCTCCGC
CACCGCCGTTCGCTCCTTCACCGAGACGAGCAAAGAGTGTGAGGGTGCCT
CCTCCTCCACCCGTATCACCGCTGTCCTACTATTAG

protein sequence of Gchil2869.t1

>Gchil2869.t1 ID=Gchil2869.t1|Name=Gchil2869.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=762bp
MRLFACFTRSNAVDTPPRPHSRPPSERKTRDPIPPDTFVPTSIPELHPEY
AHAEPYRFAARTQSARLLVEKQREAQALSISPRRRLPVEEQTVVVRGPAY
NAQTVALAHPTPPLTTYNASKPSRPVSLKVETPTTADENYIDSDDTTGRD
ENADVNRSTASPRSPHRKSAASNTSLSPSKSKRNIKSTSRKARKSSVIQS
KPNSFRIRSKSSKSFKHSKRRTPTHTRNNSDPSGSVSDVVVSQSVSHVPT
SVTNSSLPSPPDSEFEAAHDSSFIEAHIRPHLDNTPPELLEPIPVPRMSA
AFHAKHLGSPAVSTDSWGPQDSSSQRRYEDVEGDSSSGLVSVPPIGKQKV
VHMANYPSKAPELPSYAPPSPLHTSSPTVANRVRSKRKSKPYVSENPDSH
RAPPVDERVPAADLPIDPFPLSKSRRSIMSNDPAPTREIPRIVHRAARDR
IRSDESFPPPGPSQPLTGAQPQSIMRRASSGKRKTVSFHTAAPTIIEPKL
RAPSHSVPRDALLSREEVQPEVPARLAPALRNTRDSIKVASSSLPRLHDT
YDGLSSQHDEGLASQKSMVRSVSARTLSEKEPISHPNFTRPEAIQTGASR
TSQTNPGTGTSLPVVEDSSTPNDRNMSDFSAGSDESFITRASRRMSTRVV
KDREELREASRRQSRAVAEAMASQIRGIPKSAMLAFSENDIVLADGFEEE
DSSSRTSLRRKSRQVKSVQLPSIQPGVVPKPPPPPPFAPSPRRAKSVRVP
PPPPVSPLSYY*

mRNA from alignment at tig00004406_pilon:1022229..1024514+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2869.t1 ID=Gchil2869.t1|Name=Gchil2869.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2286bp|location=Sequence derived from alignment at tig00004406_pilon:1022229..1024514+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGTCTCTTTGCCTGCTTCACTCGCTCCAATGCAGTAGATACACCGCC
TCGACCGCATTCCCGACCTCCTTCCGAACGCAAAACTCGAGACCCCATCC
CTCCCGACACCTTCGTCCCCACCTCTATCCCCGAACTGCACCCCGAATAT
GCACATGCTGAGCCGTACCGTTTCGCTGCGAGGACGCAGAGCGCTCGCTT
GCTAGTCGAGAAGCAACGTGAGGCGCAAGCGCTGTCCATATCCCCGCGCC
GTCGACTCCCTGTTGAAGAACAAACCGTCGTTGTCAGAGGCCCTGCGTAC
AACGCCCAAACCGTTGCTCTCGCACATCCCACCCCTCCCCTCACTACATA
CAACGCTTCAAAACCTTCTCGCCCGGTCTCGCTCAAGGTGGAAACCCCGA
CCACTGCAGACGAGAACTATATCGACAGCGACGATACAACAGGCCGCGAC
GAAAACGCCGATGTCAACCGATCCACTGCTTCGCCTCGCTCCCCACATCG
CAAGTCTGCCGCTTCGAACACCTCGTTGAGCCCGTCCAAGTCCAAGCGCA
ACATCAAGTCAACGTCAAGGAAAGCCCGGAAGAGCTCGGTCATACAATCG
AAACCAAATTCCTTCCGTATTCGTTCCAAGTCCAGCAAGTCCTTCAAGCA
TAGCAAACGGAGAACCCCCACTCACACGCGTAACAACTCTGACCCGTCTG
GTTCCGTATCTGATGTCGTCGTATCACAGTCCGTATCCCATGTCCCGACT
TCGGTAACAAATTCGAGCCTCCCATCCCCACCCGATTCAGAGTTTGAGGC
AGCACATGATTCGTCTTTCATTGAAGCTCACATCAGACCGCATCTGGATA
ATACACCCCCGGAGCTACTCGAACCCATCCCCGTCCCCCGAATGAGCGCT
GCATTCCATGCAAAGCACTTAGGGTCTCCCGCTGTTTCAACGGATTCATG
GGGGCCGCAGGATTCATCCTCGCAGCGTCGCTATGAGGACGTTGAAGGCG
ACTCTTCTTCCGGGCTTGTTTCCGTCCCCCCTATCGGAAAACAGAAGGTT
GTGCATATGGCCAATTACCCTTCCAAAGCACCAGAGCTCCCTTCCTATGC
GCCTCCATCTCCCTTACACACGTCCTCTCCCACCGTAGCTAACCGAGTGC
GTTCGAAGAGGAAGAGCAAGCCTTATGTCTCAGAAAATCCAGACTCGCAC
AGAGCGCCACCTGTTGACGAGAGGGTGCCGGCGGCGGACTTGCCGATTGA
TCCGTTCCCTCTATCAAAGTCTAGACGATCCATCATGTCCAATGACCCTG
CTCCAACCAGGGAGATTCCGAGGATAGTACACAGGGCAGCTCGCGACCGT
ATTCGCTCAGATGAGTCGTTTCCACCTCCGGGGCCGTCACAGCCTCTGAC
CGGCGCCCAGCCCCAGAGTATTATGAGACGTGCTTCTTCGGGCAAACGCA
AGACGGTCAGTTTTCACACCGCGGCCCCTACTATAATTGAGCCAAAGTTG
CGCGCTCCCAGCCACTCCGTGCCGCGTGACGCCCTTCTGTCGAGGGAAGA
AGTTCAACCTGAGGTTCCAGCAAGACTCGCACCGGCTCTGCGGAATACTC
GTGACTCGATTAAGGTTGCGTCTTCATCACTACCGCGCCTTCATGACACC
TACGATGGTCTTTCCTCCCAACATGACGAAGGTTTAGCATCCCAGAAATC
TATGGTACGATCGGTCTCAGCGCGAACTCTTTCAGAAAAGGAACCTATCT
CTCACCCGAACTTTACGCGTCCGGAGGCAATTCAAACTGGTGCCTCGCGA
ACGAGCCAAACGAATCCGGGAACCGGCACCTCTTTGCCAGTAGTGGAGGA
TAGTTCGACCCCAAACGACCGAAACATGAGCGACTTCAGTGCGGGCTCTG
ATGAGAGTTTCATCACCCGAGCTTCACGACGGATGTCAACTCGAGTGGTC
AAAGATCGTGAGGAGCTTCGTGAAGCATCCAGACGCCAATCCAGAGCTGT
TGCTGAGGCAATGGCGTCGCAGATTCGAGGCATCCCGAAGAGCGCCATGC
TTGCGTTCTCCGAAAACGACATTGTGTTAGCAGATGGTTTCGAGGAAGAG
GATTCCTCTAGCCGCACCTCGCTCAGGAGAAAGTCGAGGCAGGTGAAGAG
TGTTCAACTCCCTTCGATTCAGCCAGGTGTGGTCCCGAAGCCACCTCCGC
CACCGCCGTTCGCTCCTTCACCGAGACGAGCAAAGAGTGTGAGGGTGCCT
CCTCCTCCACCCGTATCACCGCTGTCCTACTATTAG

Coding sequence (CDS) from alignment at tig00004406_pilon:1022229..1024514+

>Gchil2869.t1 ID=Gchil2869.t1|Name=Gchil2869.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2286bp|location=Sequence derived from alignment at tig00004406_pilon:1022229..1024514+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGTCTCTTTGCCTGCTTCACTCGCTCCAATGCAGTAGATACACCGCC
TCGACCGCATTCCCGACCTCCTTCCGAACGCAAAACTCGAGACCCCATCC
CTCCCGACACCTTCGTCCCCACCTCTATCCCCGAACTGCACCCCGAATAT
GCACATGCTGAGCCGTACCGTTTCGCTGCGAGGACGCAGAGCGCTCGCTT
GCTAGTCGAGAAGCAACGTGAGGCGCAAGCGCTGTCCATATCCCCGCGCC
GTCGACTCCCTGTTGAAGAACAAACCGTCGTTGTCAGAGGCCCTGCGTAC
AACGCCCAAACCGTTGCTCTCGCACATCCCACCCCTCCCCTCACTACATA
CAACGCTTCAAAACCTTCTCGCCCGGTCTCGCTCAAGGTGGAAACCCCGA
CCACTGCAGACGAGAACTATATCGACAGCGACGATACAACAGGCCGCGAC
GAAAACGCCGATGTCAACCGATCCACTGCTTCGCCTCGCTCCCCACATCG
CAAGTCTGCCGCTTCGAACACCTCGTTGAGCCCGTCCAAGTCCAAGCGCA
ACATCAAGTCAACGTCAAGGAAAGCCCGGAAGAGCTCGGTCATACAATCG
AAACCAAATTCCTTCCGTATTCGTTCCAAGTCCAGCAAGTCCTTCAAGCA
TAGCAAACGGAGAACCCCCACTCACACGCGTAACAACTCTGACCCGTCTG
GTTCCGTATCTGATGTCGTCGTATCACAGTCCGTATCCCATGTCCCGACT
TCGGTAACAAATTCGAGCCTCCCATCCCCACCCGATTCAGAGTTTGAGGC
AGCACATGATTCGTCTTTCATTGAAGCTCACATCAGACCGCATCTGGATA
ATACACCCCCGGAGCTACTCGAACCCATCCCCGTCCCCCGAATGAGCGCT
GCATTCCATGCAAAGCACTTAGGGTCTCCCGCTGTTTCAACGGATTCATG
GGGGCCGCAGGATTCATCCTCGCAGCGTCGCTATGAGGACGTTGAAGGCG
ACTCTTCTTCCGGGCTTGTTTCCGTCCCCCCTATCGGAAAACAGAAGGTT
GTGCATATGGCCAATTACCCTTCCAAAGCACCAGAGCTCCCTTCCTATGC
GCCTCCATCTCCCTTACACACGTCCTCTCCCACCGTAGCTAACCGAGTGC
GTTCGAAGAGGAAGAGCAAGCCTTATGTCTCAGAAAATCCAGACTCGCAC
AGAGCGCCACCTGTTGACGAGAGGGTGCCGGCGGCGGACTTGCCGATTGA
TCCGTTCCCTCTATCAAAGTCTAGACGATCCATCATGTCCAATGACCCTG
CTCCAACCAGGGAGATTCCGAGGATAGTACACAGGGCAGCTCGCGACCGT
ATTCGCTCAGATGAGTCGTTTCCACCTCCGGGGCCGTCACAGCCTCTGAC
CGGCGCCCAGCCCCAGAGTATTATGAGACGTGCTTCTTCGGGCAAACGCA
AGACGGTCAGTTTTCACACCGCGGCCCCTACTATAATTGAGCCAAAGTTG
CGCGCTCCCAGCCACTCCGTGCCGCGTGACGCCCTTCTGTCGAGGGAAGA
AGTTCAACCTGAGGTTCCAGCAAGACTCGCACCGGCTCTGCGGAATACTC
GTGACTCGATTAAGGTTGCGTCTTCATCACTACCGCGCCTTCATGACACC
TACGATGGTCTTTCCTCCCAACATGACGAAGGTTTAGCATCCCAGAAATC
TATGGTACGATCGGTCTCAGCGCGAACTCTTTCAGAAAAGGAACCTATCT
CTCACCCGAACTTTACGCGTCCGGAGGCAATTCAAACTGGTGCCTCGCGA
ACGAGCCAAACGAATCCGGGAACCGGCACCTCTTTGCCAGTAGTGGAGGA
TAGTTCGACCCCAAACGACCGAAACATGAGCGACTTCAGTGCGGGCTCTG
ATGAGAGTTTCATCACCCGAGCTTCACGACGGATGTCAACTCGAGTGGTC
AAAGATCGTGAGGAGCTTCGTGAAGCATCCAGACGCCAATCCAGAGCTGT
TGCTGAGGCAATGGCGTCGCAGATTCGAGGCATCCCGAAGAGCGCCATGC
TTGCGTTCTCCGAAAACGACATTGTGTTAGCAGATGGTTTCGAGGAAGAG
GATTCCTCTAGCCGCACCTCGCTCAGGAGAAAGTCGAGGCAGGTGAAGAG
TGTTCAACTCCCTTCGATTCAGCCAGGTGTGGTCCCGAAGCCACCTCCGC
CACCGCCGTTCGCTCCTTCACCGAGACGAGCAAAGAGTGTGAGGGTGCCT
CCTCCTCCACCCGTATCACCGCTGTCCTACTATTAG