Gchil2868.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2868.t1
Unique NameGchil2868.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length399
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004406_piloncontigtig00004406_pilon:945695..946891 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog9305.ENSSHAP00000003687
Preferred nameCHID1
PFAMsGlyco_hydro_18
Max annot lvl33208|Metazoa
KEGG koko:K17525
GOsGO:0000323,GO:0001817,GO:0001818,GO:0002576,GO:0003674,GO:0003824,GO:0004553,GO:0004568,GO:0005488,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005768,GO:0005770,GO:0005773,GO:0005775,GO:0005794,GO:0005802,GO:0006022,GO:0006026,GO:0006030,GO:0006032,GO:0006040,GO:0006807,GO:0006810,GO:0006887,GO:0006950,GO:0006952,GO:0006954,GO:0008061,GO:0008144,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0012505,GO:0016192,GO:0016787,GO:0016798,GO:0017144,GO:0030246,GO:0031347,GO:0031348,GO:0031410,GO:0031974,GO:0031982,GO:0031984,GO:0032101,GO:0032102,GO:0032940,GO:0042737,GO:0043170,GO:0043202,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044248,GO:0044421,GO:0044422,GO:0044424,GO:0044431,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0046348,GO:0046903,GO:0048519,GO:0048583,GO:0048585,GO:0050727,GO:0050728,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0051239,GO:0051241,GO:0065007,GO:0070013,GO:0070492,GO:0071704,GO:0080134,GO:0097367,GO:0097708,GO:0098791,GO:1900015,GO:1900016,GO:1901071,GO:1901072,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575
Evalue6.43e-52
EggNOG OGsKOG2091@1|root,KOG2091@2759|Eukaryota,38HBY@33154|Opisthokonta,3BGA0@33208|Metazoa,3CRXI@33213|Bilateria,481IA@7711|Chordata,48Z8N@7742|Vertebrata,3J6X7@40674|Mammalia,4K5ZH@9263|Metatheria
DescriptionChitinase domain containing 1
COG categoryG
CAZyGH18
BRITEko00000,ko04091
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2868Gchil2868Gracilaria chilensis NLEC103_M9 malegenetig00004406_pilon 945695..946891 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2868.t1.stop1Gchil2868.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004406_pilon 945695..945697 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2868.t1.CDS1Gchil2868.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 945695..946891 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2868.t1.exon1Gchil2868.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 945695..946891 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2868.t1.start1Gchil2868.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004406_pilon 946889..946891 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2868.t1Gchil2868.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004406_pilon 945695..946891 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2868.t1 ID=Gchil2868.t1|Name=Gchil2868.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=399bp
MRSGTQRHFGPIATEELFESALQQSHDSITSTMAGMAVCASLALLVVFTC
FVNIHATKLSTPIISSLKYSEIVDGNAVTETTPTRKFPLLQIYGFVTPWN
EKGKLVSLSEAEKGRLDVAVPVSWQMHPDGLAGGQDFESYYYQKLSKHGT
RVFPRILFEKWNREQFKALFHDAGKVVEAIADVCKSNGFEGVVLEIFQAL
LATGTLMYHQQDALKLMRTMGEGLRQEQLKTVLVLLPYDRDVAQHGISCS
NLQELTKGYSAVITMTYDYSTPGSGPGPVAPLPWVRRVAKYLSQECELWG
KVLLGLNFYGVDFCNDGEDRHIIGHEVVKLLERHKPEMMWWDEYGEHGFG
YRDGKDHIVVYPSRESIRLRMEVADEMGCGGVAVWDLGQGLNNFFEEF*
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spliced messenger RNA

>Gchil2868.t1 ID=Gchil2868.t1|Name=Gchil2868.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1197bp|location=Sequence derived from alignment at tig00004406_pilon:945695..946891- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGTCAGGAACTCAAAGACATTTTGGTCCGATTGCAACCGAAGAGCT
GTTTGAATCGGCTCTGCAGCAGTCCCATGACAGCATCACAAGCACTATGG
CGGGAATGGCAGTCTGCGCTTCGCTCGCCCTGCTGGTTGTTTTCACTTGC
TTTGTCAACATCCATGCGACAAAATTGTCGACGCCGATCATATCTTCCCT
CAAGTACAGCGAGATTGTGGACGGCAACGCCGTAACGGAGACTACACCGA
CTCGAAAGTTTCCTCTTCTGCAAATATATGGGTTCGTGACTCCATGGAAC
GAAAAGGGAAAGTTGGTGTCGCTGTCTGAGGCGGAAAAAGGGCGCCTAGA
TGTAGCAGTACCAGTGTCATGGCAAATGCACCCCGATGGATTGGCTGGAG
GCCAGGATTTCGAGAGTTACTACTATCAAAAGTTGTCCAAGCATGGAACT
CGGGTGTTTCCTCGCATACTATTCGAAAAGTGGAACCGAGAACAGTTCAA
AGCACTTTTCCATGATGCAGGCAAGGTTGTGGAAGCCATCGCTGATGTTT
GCAAGTCTAATGGGTTTGAAGGAGTGGTACTAGAGATATTTCAAGCTCTT
CTTGCGACAGGGACGTTGATGTACCACCAACAGGATGCCCTCAAGTTGAT
GAGAACGATGGGGGAAGGGTTGCGACAAGAGCAGCTAAAGACGGTGCTTG
TTCTATTGCCGTACGATCGAGACGTGGCGCAACATGGAATATCATGCTCA
AACCTTCAAGAGCTTACCAAAGGATATTCCGCGGTGATCACGATGACATA
TGACTACAGCACACCAGGGTCCGGGCCTGGACCCGTAGCACCCCTTCCGT
GGGTGCGACGCGTTGCAAAATACCTGTCACAAGAGTGTGAACTGTGGGGC
AAGGTGCTGCTCGGGTTGAATTTTTACGGGGTGGACTTTTGCAACGACGG
CGAAGATCGGCATATTATCGGACATGAGGTGGTGAAATTGCTCGAGAGGC
ATAAGCCGGAAATGATGTGGTGGGATGAATACGGAGAACATGGGTTCGGG
TATCGCGATGGGAAGGATCACATAGTTGTGTACCCGTCACGTGAAAGCAT
CAGGTTGAGAATGGAAGTGGCTGATGAAATGGGGTGCGGGGGGGTGGCTG
TGTGGGACTTGGGCCAAGGGCTGAACAACTTTTTCGAAGAGTTTTGA
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protein sequence of Gchil2868.t1

>Gchil2868.t1 ID=Gchil2868.t1|Name=Gchil2868.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=399bp
MRSGTQRHFGPIATEELFESALQQSHDSITSTMAGMAVCASLALLVVFTC
FVNIHATKLSTPIISSLKYSEIVDGNAVTETTPTRKFPLLQIYGFVTPWN
EKGKLVSLSEAEKGRLDVAVPVSWQMHPDGLAGGQDFESYYYQKLSKHGT
RVFPRILFEKWNREQFKALFHDAGKVVEAIADVCKSNGFEGVVLEIFQAL
LATGTLMYHQQDALKLMRTMGEGLRQEQLKTVLVLLPYDRDVAQHGISCS
NLQELTKGYSAVITMTYDYSTPGSGPGPVAPLPWVRRVAKYLSQECELWG
KVLLGLNFYGVDFCNDGEDRHIIGHEVVKLLERHKPEMMWWDEYGEHGFG
YRDGKDHIVVYPSRESIRLRMEVADEMGCGGVAVWDLGQGLNNFFEEF*
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mRNA from alignment at tig00004406_pilon:945695..946891-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2868.t1 ID=Gchil2868.t1|Name=Gchil2868.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1197bp|location=Sequence derived from alignment at tig00004406_pilon:945695..946891- (Gracilaria chilensis NLEC103_M9 male)
ATGAGGTCAGGAACTCAAAGACATTTTGGTCCGATTGCAACCGAAGAGCT
GTTTGAATCGGCTCTGCAGCAGTCCCATGACAGCATCACAAGCACTATGG
CGGGAATGGCAGTCTGCGCTTCGCTCGCCCTGCTGGTTGTTTTCACTTGC
TTTGTCAACATCCATGCGACAAAATTGTCGACGCCGATCATATCTTCCCT
CAAGTACAGCGAGATTGTGGACGGCAACGCCGTAACGGAGACTACACCGA
CTCGAAAGTTTCCTCTTCTGCAAATATATGGGTTCGTGACTCCATGGAAC
GAAAAGGGAAAGTTGGTGTCGCTGTCTGAGGCGGAAAAAGGGCGCCTAGA
TGTAGCAGTACCAGTGTCATGGCAAATGCACCCCGATGGATTGGCTGGAG
GCCAGGATTTCGAGAGTTACTACTATCAAAAGTTGTCCAAGCATGGAACT
CGGGTGTTTCCTCGCATACTATTCGAAAAGTGGAACCGAGAACAGTTCAA
AGCACTTTTCCATGATGCAGGCAAGGTTGTGGAAGCCATCGCTGATGTTT
GCAAGTCTAATGGGTTTGAAGGAGTGGTACTAGAGATATTTCAAGCTCTT
CTTGCGACAGGGACGTTGATGTACCACCAACAGGATGCCCTCAAGTTGAT
GAGAACGATGGGGGAAGGGTTGCGACAAGAGCAGCTAAAGACGGTGCTTG
TTCTATTGCCGTACGATCGAGACGTGGCGCAACATGGAATATCATGCTCA
AACCTTCAAGAGCTTACCAAAGGATATTCCGCGGTGATCACGATGACATA
TGACTACAGCACACCAGGGTCCGGGCCTGGACCCGTAGCACCCCTTCCGT
GGGTGCGACGCGTTGCAAAATACCTGTCACAAGAGTGTGAACTGTGGGGC
AAGGTGCTGCTCGGGTTGAATTTTTACGGGGTGGACTTTTGCAACGACGG
CGAAGATCGGCATATTATCGGACATGAGGTGGTGAAATTGCTCGAGAGGC
ATAAGCCGGAAATGATGTGGTGGGATGAATACGGAGAACATGGGTTCGGG
TATCGCGATGGGAAGGATCACATAGTTGTGTACCCGTCACGTGAAAGCAT
CAGGTTGAGAATGGAAGTGGCTGATGAAATGGGGTGCGGGGGGGTGGCTG
TGTGGGACTTGGGCCAAGGGCTGAACAACTTTTTCGAAGAGTTTTGA
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Coding sequence (CDS) from alignment at tig00004406_pilon:945695..946891-

>Gchil2868.t1 ID=Gchil2868.t1|Name=Gchil2868.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1197bp|location=Sequence derived from alignment at tig00004406_pilon:945695..946891- (Gracilaria chilensis NLEC103_M9 male)
ATGAGGTCAGGAACTCAAAGACATTTTGGTCCGATTGCAACCGAAGAGCT
GTTTGAATCGGCTCTGCAGCAGTCCCATGACAGCATCACAAGCACTATGG
CGGGAATGGCAGTCTGCGCTTCGCTCGCCCTGCTGGTTGTTTTCACTTGC
TTTGTCAACATCCATGCGACAAAATTGTCGACGCCGATCATATCTTCCCT
CAAGTACAGCGAGATTGTGGACGGCAACGCCGTAACGGAGACTACACCGA
CTCGAAAGTTTCCTCTTCTGCAAATATATGGGTTCGTGACTCCATGGAAC
GAAAAGGGAAAGTTGGTGTCGCTGTCTGAGGCGGAAAAAGGGCGCCTAGA
TGTAGCAGTACCAGTGTCATGGCAAATGCACCCCGATGGATTGGCTGGAG
GCCAGGATTTCGAGAGTTACTACTATCAAAAGTTGTCCAAGCATGGAACT
CGGGTGTTTCCTCGCATACTATTCGAAAAGTGGAACCGAGAACAGTTCAA
AGCACTTTTCCATGATGCAGGCAAGGTTGTGGAAGCCATCGCTGATGTTT
GCAAGTCTAATGGGTTTGAAGGAGTGGTACTAGAGATATTTCAAGCTCTT
CTTGCGACAGGGACGTTGATGTACCACCAACAGGATGCCCTCAAGTTGAT
GAGAACGATGGGGGAAGGGTTGCGACAAGAGCAGCTAAAGACGGTGCTTG
TTCTATTGCCGTACGATCGAGACGTGGCGCAACATGGAATATCATGCTCA
AACCTTCAAGAGCTTACCAAAGGATATTCCGCGGTGATCACGATGACATA
TGACTACAGCACACCAGGGTCCGGGCCTGGACCCGTAGCACCCCTTCCGT
GGGTGCGACGCGTTGCAAAATACCTGTCACAAGAGTGTGAACTGTGGGGC
AAGGTGCTGCTCGGGTTGAATTTTTACGGGGTGGACTTTTGCAACGACGG
CGAAGATCGGCATATTATCGGACATGAGGTGGTGAAATTGCTCGAGAGGC
ATAAGCCGGAAATGATGTGGTGGGATGAATACGGAGAACATGGGTTCGGG
TATCGCGATGGGAAGGATCACATAGTTGTGTACCCGTCACGTGAAAGCAT
CAGGTTGAGAATGGAAGTGGCTGATGAAATGGGGTGCGGGGGGGTGGCTG
TGTGGGACTTGGGCCAAGGGCTGAACAACTTTTTCGAAGAGTTTTGA
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