Gchil2867.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2867.t1
Unique NameGchil2867.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length583
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004406_piloncontigtig00004406_pilon:943042..944790 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4555.Si005878m
PFAMsMORN,PIP5K
Max annot lvl35493|Streptophyta
KEGG rclassRC00002,RC00078
KEGG koko:K00889
KEGG ReactionR03469
KEGG Pathwayko00562,ko01100,ko04011,ko04070,ko04072,ko04139,ko04144,ko04666,ko04810,ko05231,map00562,map01100,map04011,map04070,map04072,map04139,map04144,map04666,map04810,map05231
KEGG ModuleM00130
Evalue1.21e-45
EggNOG OGsCOG5253@1|root,KOG0229@2759|Eukaryota,37IC8@33090|Viridiplantae,3G9JS@35493|Streptophyta,3KRHU@4447|Liliopsida,3IPSC@38820|Poales
EC2.7.1.68
DescriptionPhosphatidylinositol phosphate kinases
COG categoryT
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2867Gchil2867Gracilaria chilensis NLEC103_M9 malegenetig00004406_pilon 943042..944790 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2867.t1.stop1Gchil2867.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004406_pilon 943042..943044 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2867.t1.CDS1Gchil2867.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 943042..944790 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2867.t1.exon1Gchil2867.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 943042..944790 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2867.t1.start1Gchil2867.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004406_pilon 944788..944790 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2867.t1Gchil2867.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004406_pilon 943042..944790 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2867.t1 ID=Gchil2867.t1|Name=Gchil2867.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=583bp
MGAATPPDPPPSANSLPLSINGVTSPTTPPSLTDPSHRHARSTPIDLRLP
VDLPGLEHVTSASSVPPSLLPHAEDHLDKPPHSAPPALLQARSNRNTMHS
RRLSGAAALTPSSHFSKPIEMPPEAAKARLEAEAVPANRATLERVQSGNI
DLAQKLSGSTGAMTIKKHVAKFPRIGHGHRKKVKDGQVVFKGHKNWEIVL
SIQFGLKFTSELLDDATDSEPTPEDYEESLAFDFNPNDDRSSIELNSFAR
WVHPAPYVYKLVRQRFGVEENDFLDSTCAESRVRELPTPGKSGALFYITD
DEKYFMKTIQQVEERMLVSMLPSYYRHVASNPRTFLTKYMAHFSVQTRRD
RHIRMVVMASIFNDKVFIDQKYDLKGSTFHRFASEEQLKSENVTLKDQDL
KKPIFFRPEQLDQIMKQLDRDSAYLESHHVMDYSLLVGLSHMLSEEKPYF
RAEFGELEESAPHYVGYQLDDQGRKSGIRVCMGIIDFLQRFRLRKRLEYS
ARILQSCSCTAASVAPPHLYKDRFMSFLREKFLPDPNLDVSTLESTVVCS
TQLANENEDGSGSQDGSGSDKEKSDDNSKPVL*
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spliced messenger RNA

>Gchil2867.t1 ID=Gchil2867.t1|Name=Gchil2867.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1749bp|location=Sequence derived from alignment at tig00004406_pilon:943042..944790- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGGCCGCCACGCCCCCCGACCCTCCACCGTCCGCCAACTCTCTCCC
ACTTTCCATTAACGGCGTCACCTCCCCCACCACCCCACCCTCTCTTACAG
ACCCGTCCCATCGCCATGCACGCTCTACGCCCATTGACCTTCGCCTGCCC
GTAGACCTTCCCGGCTTGGAGCACGTCACTTCCGCCTCTTCCGTCCCTCC
TTCCCTGCTACCACATGCGGAAGACCATTTGGACAAACCGCCTCACTCCG
CCCCACCTGCACTGCTGCAAGCTCGAAGCAACCGCAACACCATGCACAGC
CGCCGTCTCAGTGGCGCCGCCGCTCTTACCCCCTCCAGCCATTTCTCAAA
GCCCATTGAGATGCCCCCCGAGGCAGCAAAGGCCCGTCTCGAAGCCGAAG
CAGTTCCCGCGAATCGCGCAACTCTGGAGCGCGTCCAGTCTGGAAATATA
GATCTCGCCCAAAAGCTCAGCGGTAGCACAGGCGCCATGACCATCAAGAA
GCACGTCGCCAAATTCCCTCGCATCGGACACGGTCACCGAAAGAAGGTCA
AAGACGGCCAGGTCGTTTTCAAAGGCCACAAGAACTGGGAGATTGTCCTA
TCCATCCAGTTTGGTTTAAAGTTTACCTCAGAATTATTAGATGACGCTAC
GGACAGTGAGCCTACCCCAGAAGATTACGAAGAAAGTCTTGCTTTCGACT
TTAATCCAAACGACGATCGCTCCTCCATTGAGCTCAATTCCTTCGCCCGC
TGGGTGCACCCGGCGCCTTATGTGTATAAACTCGTTCGCCAGCGTTTTGG
GGTTGAAGAAAACGACTTTCTTGATTCTACATGCGCCGAATCAAGAGTGC
GCGAACTCCCGACTCCGGGAAAATCCGGCGCACTCTTCTACATCACTGAT
GACGAGAAGTACTTCATGAAGACCATTCAACAAGTGGAAGAGAGAATGCT
AGTCTCCATGCTTCCTTCATACTACCGACACGTCGCTAGCAACCCTCGTA
CCTTCTTGACCAAGTACATGGCCCACTTTAGCGTGCAAACTCGTAGAGAT
CGTCATATTCGCATGGTCGTCATGGCTTCCATCTTCAACGACAAGGTCTT
CATCGACCAAAAGTACGATCTCAAGGGGTCTACTTTTCATCGCTTTGCAT
CTGAGGAGCAACTCAAGAGTGAAAACGTGACTCTAAAAGACCAAGACCTT
AAAAAGCCAATCTTCTTCAGACCAGAGCAACTCGACCAAATAATGAAACA
ACTTGACCGAGATTCGGCCTACTTGGAGTCGCATCACGTAATGGACTATT
CGCTGCTGGTTGGGTTGTCACACATGCTATCGGAGGAGAAACCTTACTTC
AGAGCAGAATTCGGAGAACTTGAGGAGAGTGCGCCCCATTATGTTGGGTA
TCAACTTGATGACCAAGGCCGGAAATCAGGAATTCGTGTCTGTATGGGAA
TCATAGACTTTTTGCAGCGCTTTCGTCTTAGGAAACGTCTCGAGTACAGC
GCACGTATTCTGCAAAGCTGTTCTTGCACAGCAGCCTCCGTCGCCCCACC
GCATTTGTACAAGGATAGATTCATGTCTTTCTTGCGCGAGAAATTTTTGC
CAGATCCCAATCTGGATGTATCAACATTAGAGTCAACCGTCGTTTGTTCA
ACCCAACTTGCGAATGAAAACGAGGATGGTTCTGGAAGCCAGGATGGTAG
CGGAAGTGACAAGGAAAAAAGCGACGACAACTCCAAACCCGTCTTGTGA
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protein sequence of Gchil2867.t1

>Gchil2867.t1 ID=Gchil2867.t1|Name=Gchil2867.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=583bp
MGAATPPDPPPSANSLPLSINGVTSPTTPPSLTDPSHRHARSTPIDLRLP
VDLPGLEHVTSASSVPPSLLPHAEDHLDKPPHSAPPALLQARSNRNTMHS
RRLSGAAALTPSSHFSKPIEMPPEAAKARLEAEAVPANRATLERVQSGNI
DLAQKLSGSTGAMTIKKHVAKFPRIGHGHRKKVKDGQVVFKGHKNWEIVL
SIQFGLKFTSELLDDATDSEPTPEDYEESLAFDFNPNDDRSSIELNSFAR
WVHPAPYVYKLVRQRFGVEENDFLDSTCAESRVRELPTPGKSGALFYITD
DEKYFMKTIQQVEERMLVSMLPSYYRHVASNPRTFLTKYMAHFSVQTRRD
RHIRMVVMASIFNDKVFIDQKYDLKGSTFHRFASEEQLKSENVTLKDQDL
KKPIFFRPEQLDQIMKQLDRDSAYLESHHVMDYSLLVGLSHMLSEEKPYF
RAEFGELEESAPHYVGYQLDDQGRKSGIRVCMGIIDFLQRFRLRKRLEYS
ARILQSCSCTAASVAPPHLYKDRFMSFLREKFLPDPNLDVSTLESTVVCS
TQLANENEDGSGSQDGSGSDKEKSDDNSKPVL*
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mRNA from alignment at tig00004406_pilon:943042..944790-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2867.t1 ID=Gchil2867.t1|Name=Gchil2867.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1749bp|location=Sequence derived from alignment at tig00004406_pilon:943042..944790- (Gracilaria chilensis NLEC103_M9 male)
ATGGGGGCCGCCACGCCCCCCGACCCTCCACCGTCCGCCAACTCTCTCCC
ACTTTCCATTAACGGCGTCACCTCCCCCACCACCCCACCCTCTCTTACAG
ACCCGTCCCATCGCCATGCACGCTCTACGCCCATTGACCTTCGCCTGCCC
GTAGACCTTCCCGGCTTGGAGCACGTCACTTCCGCCTCTTCCGTCCCTCC
TTCCCTGCTACCACATGCGGAAGACCATTTGGACAAACCGCCTCACTCCG
CCCCACCTGCACTGCTGCAAGCTCGAAGCAACCGCAACACCATGCACAGC
CGCCGTCTCAGTGGCGCCGCCGCTCTTACCCCCTCCAGCCATTTCTCAAA
GCCCATTGAGATGCCCCCCGAGGCAGCAAAGGCCCGTCTCGAAGCCGAAG
CAGTTCCCGCGAATCGCGCAACTCTGGAGCGCGTCCAGTCTGGAAATATA
GATCTCGCCCAAAAGCTCAGCGGTAGCACAGGCGCCATGACCATCAAGAA
GCACGTCGCCAAATTCCCTCGCATCGGACACGGTCACCGAAAGAAGGTCA
AAGACGGCCAGGTCGTTTTCAAAGGCCACAAGAACTGGGAGATTGTCCTA
TCCATCCAGTTTGGTTTAAAGTTTACCTCAGAATTATTAGATGACGCTAC
GGACAGTGAGCCTACCCCAGAAGATTACGAAGAAAGTCTTGCTTTCGACT
TTAATCCAAACGACGATCGCTCCTCCATTGAGCTCAATTCCTTCGCCCGC
TGGGTGCACCCGGCGCCTTATGTGTATAAACTCGTTCGCCAGCGTTTTGG
GGTTGAAGAAAACGACTTTCTTGATTCTACATGCGCCGAATCAAGAGTGC
GCGAACTCCCGACTCCGGGAAAATCCGGCGCACTCTTCTACATCACTGAT
GACGAGAAGTACTTCATGAAGACCATTCAACAAGTGGAAGAGAGAATGCT
AGTCTCCATGCTTCCTTCATACTACCGACACGTCGCTAGCAACCCTCGTA
CCTTCTTGACCAAGTACATGGCCCACTTTAGCGTGCAAACTCGTAGAGAT
CGTCATATTCGCATGGTCGTCATGGCTTCCATCTTCAACGACAAGGTCTT
CATCGACCAAAAGTACGATCTCAAGGGGTCTACTTTTCATCGCTTTGCAT
CTGAGGAGCAACTCAAGAGTGAAAACGTGACTCTAAAAGACCAAGACCTT
AAAAAGCCAATCTTCTTCAGACCAGAGCAACTCGACCAAATAATGAAACA
ACTTGACCGAGATTCGGCCTACTTGGAGTCGCATCACGTAATGGACTATT
CGCTGCTGGTTGGGTTGTCACACATGCTATCGGAGGAGAAACCTTACTTC
AGAGCAGAATTCGGAGAACTTGAGGAGAGTGCGCCCCATTATGTTGGGTA
TCAACTTGATGACCAAGGCCGGAAATCAGGAATTCGTGTCTGTATGGGAA
TCATAGACTTTTTGCAGCGCTTTCGTCTTAGGAAACGTCTCGAGTACAGC
GCACGTATTCTGCAAAGCTGTTCTTGCACAGCAGCCTCCGTCGCCCCACC
GCATTTGTACAAGGATAGATTCATGTCTTTCTTGCGCGAGAAATTTTTGC
CAGATCCCAATCTGGATGTATCAACATTAGAGTCAACCGTCGTTTGTTCA
ACCCAACTTGCGAATGAAAACGAGGATGGTTCTGGAAGCCAGGATGGTAG
CGGAAGTGACAAGGAAAAAAGCGACGACAACTCCAAACCCGTCTTGTGA
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Coding sequence (CDS) from alignment at tig00004406_pilon:943042..944790-

>Gchil2867.t1 ID=Gchil2867.t1|Name=Gchil2867.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1749bp|location=Sequence derived from alignment at tig00004406_pilon:943042..944790- (Gracilaria chilensis NLEC103_M9 male)
ATGGGGGCCGCCACGCCCCCCGACCCTCCACCGTCCGCCAACTCTCTCCC
ACTTTCCATTAACGGCGTCACCTCCCCCACCACCCCACCCTCTCTTACAG
ACCCGTCCCATCGCCATGCACGCTCTACGCCCATTGACCTTCGCCTGCCC
GTAGACCTTCCCGGCTTGGAGCACGTCACTTCCGCCTCTTCCGTCCCTCC
TTCCCTGCTACCACATGCGGAAGACCATTTGGACAAACCGCCTCACTCCG
CCCCACCTGCACTGCTGCAAGCTCGAAGCAACCGCAACACCATGCACAGC
CGCCGTCTCAGTGGCGCCGCCGCTCTTACCCCCTCCAGCCATTTCTCAAA
GCCCATTGAGATGCCCCCCGAGGCAGCAAAGGCCCGTCTCGAAGCCGAAG
CAGTTCCCGCGAATCGCGCAACTCTGGAGCGCGTCCAGTCTGGAAATATA
GATCTCGCCCAAAAGCTCAGCGGTAGCACAGGCGCCATGACCATCAAGAA
GCACGTCGCCAAATTCCCTCGCATCGGACACGGTCACCGAAAGAAGGTCA
AAGACGGCCAGGTCGTTTTCAAAGGCCACAAGAACTGGGAGATTGTCCTA
TCCATCCAGTTTGGTTTAAAGTTTACCTCAGAATTATTAGATGACGCTAC
GGACAGTGAGCCTACCCCAGAAGATTACGAAGAAAGTCTTGCTTTCGACT
TTAATCCAAACGACGATCGCTCCTCCATTGAGCTCAATTCCTTCGCCCGC
TGGGTGCACCCGGCGCCTTATGTGTATAAACTCGTTCGCCAGCGTTTTGG
GGTTGAAGAAAACGACTTTCTTGATTCTACATGCGCCGAATCAAGAGTGC
GCGAACTCCCGACTCCGGGAAAATCCGGCGCACTCTTCTACATCACTGAT
GACGAGAAGTACTTCATGAAGACCATTCAACAAGTGGAAGAGAGAATGCT
AGTCTCCATGCTTCCTTCATACTACCGACACGTCGCTAGCAACCCTCGTA
CCTTCTTGACCAAGTACATGGCCCACTTTAGCGTGCAAACTCGTAGAGAT
CGTCATATTCGCATGGTCGTCATGGCTTCCATCTTCAACGACAAGGTCTT
CATCGACCAAAAGTACGATCTCAAGGGGTCTACTTTTCATCGCTTTGCAT
CTGAGGAGCAACTCAAGAGTGAAAACGTGACTCTAAAAGACCAAGACCTT
AAAAAGCCAATCTTCTTCAGACCAGAGCAACTCGACCAAATAATGAAACA
ACTTGACCGAGATTCGGCCTACTTGGAGTCGCATCACGTAATGGACTATT
CGCTGCTGGTTGGGTTGTCACACATGCTATCGGAGGAGAAACCTTACTTC
AGAGCAGAATTCGGAGAACTTGAGGAGAGTGCGCCCCATTATGTTGGGTA
TCAACTTGATGACCAAGGCCGGAAATCAGGAATTCGTGTCTGTATGGGAA
TCATAGACTTTTTGCAGCGCTTTCGTCTTAGGAAACGTCTCGAGTACAGC
GCACGTATTCTGCAAAGCTGTTCTTGCACAGCAGCCTCCGTCGCCCCACC
GCATTTGTACAAGGATAGATTCATGTCTTTCTTGCGCGAGAAATTTTTGC
CAGATCCCAATCTGGATGTATCAACATTAGAGTCAACCGTCGTTTGTTCA
ACCCAACTTGCGAATGAAAACGAGGATGGTTCTGGAAGCCAGGATGGTAG
CGGAAGTGACAAGGAAAAAAGCGACGACAACTCCAAACCCGTCTTGTGA
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