Gchil2860.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2860.t1
Unique Name	Gchil2860.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	302

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004406_pilon	contig	tig00004406_pilon:931292..932197 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	227086.JGI_V11_77004
PFAMs	Mito_carr
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K15104
KEGG TC	2.A.29.2.1,2.A.29.2.9
Evalue	3.49e-81
EggNOG OGs	KOG0759@1\|root,KOG0759@2759\|Eukaryota
Description	thiosulfate transmembrane transporter activity
COG category	U
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2860	Gchil2860	Gracilaria chilensis NLEC103_M9 male	gene	tig00004406_pilon 931292..932197 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2860.t1.start1	Gchil2860.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004406_pilon 931292..931294 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2860.t1.CDS1	Gchil2860.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004406_pilon 931292..932197 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2860.t1.exon1	Gchil2860.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004406_pilon 931292..932197 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2860.t1.stop1	Gchil2860.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004406_pilon 932195..932197 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2860.t1	Gchil2860.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004406_pilon 931292..932197 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004406_pilon:931292..932197+
coding sequence from alignment at tig00004406_pilon:931292..932197+

mRNA sequence

>Gchil2860.t1 ID=Gchil2860.t1|Name=Gchil2860.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=302bp
MTTTNANQGQSKLSVLPFVRGGISGVLSWLVIHPADVVKVRMQIAGEGTK
ETPYKGFIQAARVISKSEGVSALYSGLSAALTRQISYTTLRLGLYSSLRD
HYAKDGNSISMGAKFAVGTAAGGIASAISTPVELSMVRMYSDGAAEASKR
RGYRNIFDALWRIAKEEGISGLWRGATPTVTRSMVANCVQLGTYDQAKEV
FSETGINFLQEGVSLHLAASITSGFCYSVVTLPIDSAKTRVQNQRPVNGV
MPYRSLFHAMVKVASLEGASALWKGFTPYFSRCAGHTVVMFLVLEQVKKI
L*

spliced messenger RNA

>Gchil2860.t1 ID=Gchil2860.t1|Name=Gchil2860.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=906bp|location=Sequence derived from alignment at tig00004406_pilon:931292..932197+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCACGACGAATGCAAATCAGGGACAGAGCAAACTTTCCGTGCTTCC
ATTTGTGCGGGGTGGAATTTCTGGAGTTCTATCATGGCTTGTCATTCACC
CCGCCGATGTAGTCAAAGTGCGCATGCAGATCGCTGGTGAGGGAACCAAG
GAAACCCCGTATAAGGGATTCATACAAGCCGCGCGAGTGATATCCAAGTC
GGAGGGCGTCAGCGCATTGTATTCAGGTTTGTCGGCCGCTCTTACTCGAC
AGATCTCATATACTACCTTACGACTTGGATTGTATTCCAGCCTTCGAGAC
CATTATGCAAAGGATGGTAATTCGATATCGATGGGCGCAAAATTTGCTGT
CGGTACTGCTGCTGGAGGTATAGCAAGTGCAATATCTACTCCTGTGGAGC
TGTCGATGGTGCGTATGTACAGTGACGGAGCGGCGGAAGCATCAAAGAGG
CGCGGGTATCGAAACATATTCGACGCTTTATGGCGAATTGCGAAAGAAGA
GGGTATTTCTGGGTTGTGGCGAGGTGCTACTCCCACGGTCACAAGAAGCA
TGGTTGCAAACTGTGTACAGCTTGGAACATACGATCAGGCGAAGGAAGTT
TTCAGTGAAACCGGGATTAACTTTCTCCAGGAAGGCGTTTCGCTTCACTT
GGCTGCATCCATCACCTCTGGCTTTTGTTACTCGGTCGTCACACTTCCAA
TCGATTCTGCAAAGACTCGCGTTCAAAATCAGCGCCCAGTAAACGGGGTT
ATGCCGTATCGCAGTTTATTCCATGCCATGGTGAAAGTAGCGAGCTTGGA
AGGTGCATCTGCACTGTGGAAAGGATTCACCCCCTACTTCTCAAGATGCG
CTGGGCATACAGTGGTAATGTTCTTGGTCTTGGAACAAGTCAAGAAGATC
TTGTGA

protein sequence of Gchil2860.t1

>Gchil2860.t1 ID=Gchil2860.t1|Name=Gchil2860.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=302bp
MTTTNANQGQSKLSVLPFVRGGISGVLSWLVIHPADVVKVRMQIAGEGTK
ETPYKGFIQAARVISKSEGVSALYSGLSAALTRQISYTTLRLGLYSSLRD
HYAKDGNSISMGAKFAVGTAAGGIASAISTPVELSMVRMYSDGAAEASKR
RGYRNIFDALWRIAKEEGISGLWRGATPTVTRSMVANCVQLGTYDQAKEV
FSETGINFLQEGVSLHLAASITSGFCYSVVTLPIDSAKTRVQNQRPVNGV
MPYRSLFHAMVKVASLEGASALWKGFTPYFSRCAGHTVVMFLVLEQVKKI
L*

mRNA from alignment at tig00004406_pilon:931292..932197+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2860.t1 ID=Gchil2860.t1|Name=Gchil2860.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=906bp|location=Sequence derived from alignment at tig00004406_pilon:931292..932197+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCACGACGAATGCAAATCAGGGACAGAGCAAACTTTCCGTGCTTCC
ATTTGTGCGGGGTGGAATTTCTGGAGTTCTATCATGGCTTGTCATTCACC
CCGCCGATGTAGTCAAAGTGCGCATGCAGATCGCTGGTGAGGGAACCAAG
GAAACCCCGTATAAGGGATTCATACAAGCCGCGCGAGTGATATCCAAGTC
GGAGGGCGTCAGCGCATTGTATTCAGGTTTGTCGGCCGCTCTTACTCGAC
AGATCTCATATACTACCTTACGACTTGGATTGTATTCCAGCCTTCGAGAC
CATTATGCAAAGGATGGTAATTCGATATCGATGGGCGCAAAATTTGCTGT
CGGTACTGCTGCTGGAGGTATAGCAAGTGCAATATCTACTCCTGTGGAGC
TGTCGATGGTGCGTATGTACAGTGACGGAGCGGCGGAAGCATCAAAGAGG
CGCGGGTATCGAAACATATTCGACGCTTTATGGCGAATTGCGAAAGAAGA
GGGTATTTCTGGGTTGTGGCGAGGTGCTACTCCCACGGTCACAAGAAGCA
TGGTTGCAAACTGTGTACAGCTTGGAACATACGATCAGGCGAAGGAAGTT
TTCAGTGAAACCGGGATTAACTTTCTCCAGGAAGGCGTTTCGCTTCACTT
GGCTGCATCCATCACCTCTGGCTTTTGTTACTCGGTCGTCACACTTCCAA
TCGATTCTGCAAAGACTCGCGTTCAAAATCAGCGCCCAGTAAACGGGGTT
ATGCCGTATCGCAGTTTATTCCATGCCATGGTGAAAGTAGCGAGCTTGGA
AGGTGCATCTGCACTGTGGAAAGGATTCACCCCCTACTTCTCAAGATGCG
CTGGGCATACAGTGGTAATGTTCTTGGTCTTGGAACAAGTCAAGAAGATC
TTGTGA

Coding sequence (CDS) from alignment at tig00004406_pilon:931292..932197+

>Gchil2860.t1 ID=Gchil2860.t1|Name=Gchil2860.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=906bp|location=Sequence derived from alignment at tig00004406_pilon:931292..932197+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCACGACGAATGCAAATCAGGGACAGAGCAAACTTTCCGTGCTTCC
ATTTGTGCGGGGTGGAATTTCTGGAGTTCTATCATGGCTTGTCATTCACC
CCGCCGATGTAGTCAAAGTGCGCATGCAGATCGCTGGTGAGGGAACCAAG
GAAACCCCGTATAAGGGATTCATACAAGCCGCGCGAGTGATATCCAAGTC
GGAGGGCGTCAGCGCATTGTATTCAGGTTTGTCGGCCGCTCTTACTCGAC
AGATCTCATATACTACCTTACGACTTGGATTGTATTCCAGCCTTCGAGAC
CATTATGCAAAGGATGGTAATTCGATATCGATGGGCGCAAAATTTGCTGT
CGGTACTGCTGCTGGAGGTATAGCAAGTGCAATATCTACTCCTGTGGAGC
TGTCGATGGTGCGTATGTACAGTGACGGAGCGGCGGAAGCATCAAAGAGG
CGCGGGTATCGAAACATATTCGACGCTTTATGGCGAATTGCGAAAGAAGA
GGGTATTTCTGGGTTGTGGCGAGGTGCTACTCCCACGGTCACAAGAAGCA
TGGTTGCAAACTGTGTACAGCTTGGAACATACGATCAGGCGAAGGAAGTT
TTCAGTGAAACCGGGATTAACTTTCTCCAGGAAGGCGTTTCGCTTCACTT
GGCTGCATCCATCACCTCTGGCTTTTGTTACTCGGTCGTCACACTTCCAA
TCGATTCTGCAAAGACTCGCGTTCAAAATCAGCGCCCAGTAAACGGGGTT
ATGCCGTATCGCAGTTTATTCCATGCCATGGTGAAAGTAGCGAGCTTGGA
AGGTGCATCTGCACTGTGGAAAGGATTCACCCCCTACTTCTCAAGATGCG
CTGGGCATACAGTGGTAATGTTCTTGGTCTTGGAACAAGTCAAGAAGATC
TTGTGA