Gchil2856.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2856.t1
Unique NameGchil2856.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length496
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004406_piloncontigtig00004406_pilon:924172..925659 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7176.CPIJ017918-PA
Preferred namePUS3
PFAMsPseudoU_synth_1
Max annot lvl33208|Metazoa
KEGG koko:K01855
GOsGO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1990481
Evalue1.89e-67
EggNOG OGsCOG0101@1|root,KOG2554@2759|Eukaryota,38DRB@33154|Opisthokonta,3B9CT@33208|Metazoa,3CZ92@33213|Bilateria,41VYV@6656|Arthropoda,3SG6J@50557|Insecta,458I1@7147|Diptera,45ESB@7148|Nematocera
EC5.4.99.45
DescriptiontRNA pseudouridine synthase
COG categoryJ
BRITEko00000,ko01000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2856Gchil2856Gracilaria chilensis NLEC103_M9 malegenetig00004406_pilon 924172..925659 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2856.t1.stop1Gchil2856.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004406_pilon 924172..924174 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2856.t1.CDS1Gchil2856.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 924172..925659 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2856.t1.exon1Gchil2856.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 924172..925659 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2856.t1.start1Gchil2856.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004406_pilon 925657..925659 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2856.t1Gchil2856.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004406_pilon 924172..925659 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2856.t1 ID=Gchil2856.t1|Name=Gchil2856.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=496bp
MPPRCNFREHELRAMSREQLLSLALNQLLPHSSPPQDSKTTLPVKSRPLN
DEPLRKKPRQFDMSRYGQRQIALRIMYTGWRFHGFASQIDSENTVEAHLF
SSLLKTRLISSRGDCHYSRAGRTDVGVSAACQIVGIRVRSNVKPPSTGQR
ELDYIKIVNSTLPRGIRCTGWTPVSDGTSTYPEVYEGDPLPIQEYWTAVR
KGQIEETCPIRRPGEQFSARFDATYRSYKYFFPRGDLDINAMRKGASFFE
GTHDFRNFCRIDDNVTNFERHMFIVQIRRMHDDSLIHDKKDDEYTMYYVF
VKGQAFLWHQVRCMTAVLFDIGMRNEKPDVIKRMLADARTAGCTFSNGRP
QYRMASPIPLLLYECSYPGTVLHFPQTFERDFVPPVTNANDVRRTSFERA
NSVIAKDFAGEAAKMSILQIVLWDQDQSISYSSRNETECSSKSFKELRGP
RDFLIDHTHGRHIPYDERLTDDSLELKQKKAAMKLKPKEKLQVNL*
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spliced messenger RNA

>Gchil2856.t1 ID=Gchil2856.t1|Name=Gchil2856.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1488bp|location=Sequence derived from alignment at tig00004406_pilon:924172..925659- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCCTCGCTGCAACTTTCGTGAGCATGAACTTCGTGCCATGTCGCG
AGAGCAACTATTGTCTCTCGCTTTAAACCAACTGCTTCCTCATTCTTCTC
CTCCTCAGGACAGCAAAACAACCTTACCCGTCAAGTCAAGGCCACTGAAT
GATGAACCGCTTCGTAAGAAACCCCGCCAATTTGACATGAGTCGATATGG
ACAAAGACAAATAGCACTGCGAATCATGTATACAGGTTGGCGTTTTCACG
GCTTCGCATCGCAGATTGACTCAGAAAACACGGTTGAGGCTCACCTATTT
TCATCTCTGCTCAAAACCCGTCTCATCTCATCTCGCGGGGATTGCCACTA
CTCTCGAGCGGGTCGAACCGATGTTGGCGTTTCAGCCGCATGTCAAATTG
TTGGTATTCGCGTTCGGAGCAATGTCAAACCCCCTTCAACAGGTCAACGA
GAGCTTGACTATATTAAAATTGTCAATAGTACACTGCCCCGGGGTATTCG
GTGTACTGGATGGACACCTGTATCAGACGGTACCTCCACTTATCCTGAGG
TATACGAAGGAGATCCCTTGCCCATACAAGAATACTGGACGGCCGTAAGA
AAAGGACAAATCGAGGAAACGTGCCCTATTCGGCGGCCCGGGGAGCAGTT
TTCAGCTCGTTTTGACGCCACGTACAGATCCTACAAGTACTTCTTCCCAA
GGGGTGATCTTGATATCAATGCGATGCGTAAGGGCGCCTCATTCTTTGAA
GGTACGCATGATTTTCGAAACTTTTGTCGCATCGATGACAACGTAACGAA
CTTTGAACGTCACATGTTCATTGTTCAAATTCGGCGTATGCACGACGACA
GTTTGATTCATGACAAAAAAGATGATGAGTACACCATGTATTACGTTTTC
GTGAAAGGTCAGGCCTTTCTCTGGCATCAAGTACGATGTATGACTGCGGT
GTTGTTTGATATTGGTATGAGGAATGAGAAACCGGACGTGATCAAACGTA
TGTTAGCAGATGCTAGAACGGCCGGATGTACCTTTTCCAACGGCAGACCG
CAGTACAGAATGGCGTCTCCGATACCGCTTCTTCTATACGAGTGTAGTTA
CCCAGGAACTGTGCTACATTTTCCTCAAACGTTCGAGCGCGATTTTGTTC
CCCCTGTTACAAACGCAAACGATGTGAGACGTACTTCGTTTGAGCGAGCC
AACTCGGTCATCGCCAAGGATTTTGCTGGAGAAGCTGCAAAAATGTCAAT
TTTACAGATCGTATTATGGGACCAAGACCAATCCATTTCTTACTCATCAA
GAAATGAAACTGAGTGTTCCTCGAAATCCTTCAAAGAGCTTCGAGGACCC
AGAGACTTTTTAATTGACCACACTCATGGTCGACACATCCCCTACGATGA
GAGGCTAACTGACGACTCTTTGGAATTGAAACAGAAAAAGGCTGCTATGA
AGCTCAAGCCAAAGGAAAAATTGCAGGTCAATTTATAA
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protein sequence of Gchil2856.t1

>Gchil2856.t1 ID=Gchil2856.t1|Name=Gchil2856.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=496bp
MPPRCNFREHELRAMSREQLLSLALNQLLPHSSPPQDSKTTLPVKSRPLN
DEPLRKKPRQFDMSRYGQRQIALRIMYTGWRFHGFASQIDSENTVEAHLF
SSLLKTRLISSRGDCHYSRAGRTDVGVSAACQIVGIRVRSNVKPPSTGQR
ELDYIKIVNSTLPRGIRCTGWTPVSDGTSTYPEVYEGDPLPIQEYWTAVR
KGQIEETCPIRRPGEQFSARFDATYRSYKYFFPRGDLDINAMRKGASFFE
GTHDFRNFCRIDDNVTNFERHMFIVQIRRMHDDSLIHDKKDDEYTMYYVF
VKGQAFLWHQVRCMTAVLFDIGMRNEKPDVIKRMLADARTAGCTFSNGRP
QYRMASPIPLLLYECSYPGTVLHFPQTFERDFVPPVTNANDVRRTSFERA
NSVIAKDFAGEAAKMSILQIVLWDQDQSISYSSRNETECSSKSFKELRGP
RDFLIDHTHGRHIPYDERLTDDSLELKQKKAAMKLKPKEKLQVNL*
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mRNA from alignment at tig00004406_pilon:924172..925659-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2856.t1 ID=Gchil2856.t1|Name=Gchil2856.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1488bp|location=Sequence derived from alignment at tig00004406_pilon:924172..925659- (Gracilaria chilensis NLEC103_M9 male)
ATGCCTCCTCGCTGCAACTTTCGTGAGCATGAACTTCGTGCCATGTCGCG
AGAGCAACTATTGTCTCTCGCTTTAAACCAACTGCTTCCTCATTCTTCTC
CTCCTCAGGACAGCAAAACAACCTTACCCGTCAAGTCAAGGCCACTGAAT
GATGAACCGCTTCGTAAGAAACCCCGCCAATTTGACATGAGTCGATATGG
ACAAAGACAAATAGCACTGCGAATCATGTATACAGGTTGGCGTTTTCACG
GCTTCGCATCGCAGATTGACTCAGAAAACACGGTTGAGGCTCACCTATTT
TCATCTCTGCTCAAAACCCGTCTCATCTCATCTCGCGGGGATTGCCACTA
CTCTCGAGCGGGTCGAACCGATGTTGGCGTTTCAGCCGCATGTCAAATTG
TTGGTATTCGCGTTCGGAGCAATGTCAAACCCCCTTCAACAGGTCAACGA
GAGCTTGACTATATTAAAATTGTCAATAGTACACTGCCCCGGGGTATTCG
GTGTACTGGATGGACACCTGTATCAGACGGTACCTCCACTTATCCTGAGG
TATACGAAGGAGATCCCTTGCCCATACAAGAATACTGGACGGCCGTAAGA
AAAGGACAAATCGAGGAAACGTGCCCTATTCGGCGGCCCGGGGAGCAGTT
TTCAGCTCGTTTTGACGCCACGTACAGATCCTACAAGTACTTCTTCCCAA
GGGGTGATCTTGATATCAATGCGATGCGTAAGGGCGCCTCATTCTTTGAA
GGTACGCATGATTTTCGAAACTTTTGTCGCATCGATGACAACGTAACGAA
CTTTGAACGTCACATGTTCATTGTTCAAATTCGGCGTATGCACGACGACA
GTTTGATTCATGACAAAAAAGATGATGAGTACACCATGTATTACGTTTTC
GTGAAAGGTCAGGCCTTTCTCTGGCATCAAGTACGATGTATGACTGCGGT
GTTGTTTGATATTGGTATGAGGAATGAGAAACCGGACGTGATCAAACGTA
TGTTAGCAGATGCTAGAACGGCCGGATGTACCTTTTCCAACGGCAGACCG
CAGTACAGAATGGCGTCTCCGATACCGCTTCTTCTATACGAGTGTAGTTA
CCCAGGAACTGTGCTACATTTTCCTCAAACGTTCGAGCGCGATTTTGTTC
CCCCTGTTACAAACGCAAACGATGTGAGACGTACTTCGTTTGAGCGAGCC
AACTCGGTCATCGCCAAGGATTTTGCTGGAGAAGCTGCAAAAATGTCAAT
TTTACAGATCGTATTATGGGACCAAGACCAATCCATTTCTTACTCATCAA
GAAATGAAACTGAGTGTTCCTCGAAATCCTTCAAAGAGCTTCGAGGACCC
AGAGACTTTTTAATTGACCACACTCATGGTCGACACATCCCCTACGATGA
GAGGCTAACTGACGACTCTTTGGAATTGAAACAGAAAAAGGCTGCTATGA
AGCTCAAGCCAAAGGAAAAATTGCAGGTCAATTTATAA
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Coding sequence (CDS) from alignment at tig00004406_pilon:924172..925659-

>Gchil2856.t1 ID=Gchil2856.t1|Name=Gchil2856.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1488bp|location=Sequence derived from alignment at tig00004406_pilon:924172..925659- (Gracilaria chilensis NLEC103_M9 male)
ATGCCTCCTCGCTGCAACTTTCGTGAGCATGAACTTCGTGCCATGTCGCG
AGAGCAACTATTGTCTCTCGCTTTAAACCAACTGCTTCCTCATTCTTCTC
CTCCTCAGGACAGCAAAACAACCTTACCCGTCAAGTCAAGGCCACTGAAT
GATGAACCGCTTCGTAAGAAACCCCGCCAATTTGACATGAGTCGATATGG
ACAAAGACAAATAGCACTGCGAATCATGTATACAGGTTGGCGTTTTCACG
GCTTCGCATCGCAGATTGACTCAGAAAACACGGTTGAGGCTCACCTATTT
TCATCTCTGCTCAAAACCCGTCTCATCTCATCTCGCGGGGATTGCCACTA
CTCTCGAGCGGGTCGAACCGATGTTGGCGTTTCAGCCGCATGTCAAATTG
TTGGTATTCGCGTTCGGAGCAATGTCAAACCCCCTTCAACAGGTCAACGA
GAGCTTGACTATATTAAAATTGTCAATAGTACACTGCCCCGGGGTATTCG
GTGTACTGGATGGACACCTGTATCAGACGGTACCTCCACTTATCCTGAGG
TATACGAAGGAGATCCCTTGCCCATACAAGAATACTGGACGGCCGTAAGA
AAAGGACAAATCGAGGAAACGTGCCCTATTCGGCGGCCCGGGGAGCAGTT
TTCAGCTCGTTTTGACGCCACGTACAGATCCTACAAGTACTTCTTCCCAA
GGGGTGATCTTGATATCAATGCGATGCGTAAGGGCGCCTCATTCTTTGAA
GGTACGCATGATTTTCGAAACTTTTGTCGCATCGATGACAACGTAACGAA
CTTTGAACGTCACATGTTCATTGTTCAAATTCGGCGTATGCACGACGACA
GTTTGATTCATGACAAAAAAGATGATGAGTACACCATGTATTACGTTTTC
GTGAAAGGTCAGGCCTTTCTCTGGCATCAAGTACGATGTATGACTGCGGT
GTTGTTTGATATTGGTATGAGGAATGAGAAACCGGACGTGATCAAACGTA
TGTTAGCAGATGCTAGAACGGCCGGATGTACCTTTTCCAACGGCAGACCG
CAGTACAGAATGGCGTCTCCGATACCGCTTCTTCTATACGAGTGTAGTTA
CCCAGGAACTGTGCTACATTTTCCTCAAACGTTCGAGCGCGATTTTGTTC
CCCCTGTTACAAACGCAAACGATGTGAGACGTACTTCGTTTGAGCGAGCC
AACTCGGTCATCGCCAAGGATTTTGCTGGAGAAGCTGCAAAAATGTCAAT
TTTACAGATCGTATTATGGGACCAAGACCAATCCATTTCTTACTCATCAA
GAAATGAAACTGAGTGTTCCTCGAAATCCTTCAAAGAGCTTCGAGGACCC
AGAGACTTTTTAATTGACCACACTCATGGTCGACACATCCCCTACGATGA
GAGGCTAACTGACGACTCTTTGGAATTGAAACAGAAAAAGGCTGCTATGA
AGCTCAAGCCAAAGGAAAAATTGCAGGTCAATTTATAA
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