Gchil2855.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2855.t1
Unique NameGchil2855.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length69
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004406_piloncontigtig00004406_pilon:923835..924136 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2855Gchil2855Gracilaria chilensis NLEC103_M9 malegenetig00004406_pilon 923835..924136 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2855.t1Gchil2855.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004406_pilon 923835..924136 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2855.t1.stop1Gchil2855.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004406_pilon 923835..923837 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2855.t1.CDS1Gchil2855.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 923835..923937 -
Gchil2855.t1.CDS2Gchil2855.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 924033..924136 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2855.t1.exon1Gchil2855.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 923835..923937 -
Gchil2855.t1.exon2Gchil2855.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 924033..924136 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2855.t1.intron1Gchil2855.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004406_pilon 923938..924032 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2855.t1.start1Gchil2855.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004406_pilon 924134..924136 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2855.t1 ID=Gchil2855.t1|Name=Gchil2855.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=69bp
MESEQYWVWFICKVIKDAKTVRAFFEDITTQCHFQTESLSICYTEELCLR
RLVTSNSTSPIECTHFAL*
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spliced messenger RNA

>Gchil2855.t1 ID=Gchil2855.t1|Name=Gchil2855.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=207bp|location=Sequence derived from alignment at tig00004406_pilon:923835..924136- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGTCCGAACAGTACTGGGTATGGTTCATATGCAAAGTTATCAAAGA
CGCAAAGACGGTGCGGGCTTTCTTCGAAGATATTACCACCCAGTGCCATT
TTCAGACAGAAAGTCTCTCTATCTGCTATACGGAGGAGCTGTGCCTACGA
AGGCTGGTCACGTCTAACAGCACCTCGCCCATCGAATGCACACACTTCGC
CCTTTGA
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protein sequence of Gchil2855.t1

>Gchil2855.t1 ID=Gchil2855.t1|Name=Gchil2855.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=69bp
MESEQYWVWFICKVIKDAKTVRAFFEDITTQCHFQTESLSICYTEELCLR
RLVTSNSTSPIECTHFAL*
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mRNA from alignment at tig00004406_pilon:923835..924136-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2855.t1 ID=Gchil2855.t1|Name=Gchil2855.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=302bp|location=Sequence derived from alignment at tig00004406_pilon:923835..924136- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGTCCGAACAGTACTGGGTATGGTTCATATGCAAAGTTATCAAAGA
CGCAAAGACGGTGCGGGCTTTCTTCGAAGATATTACCACCCAGTGCCATT
TTCAGTAAGTGAGATTGCTCTCTTTCGCCATTATTGTTCTATTACTTATT
ACTTCCGGGCCGTTCTTCCCTTGGCGTGACCGTGACCGTGACCGTGAAGG
ACAGAAAGTCTCTCTATCTGCTATACGGAGGAGCTGTGCCTACGAAGGCT
GGTCACGTCTAACAGCACCTCGCCCATCGAATGCACACACTTCGCCCTTT
GA
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Coding sequence (CDS) from alignment at tig00004406_pilon:923835..924136-

>Gchil2855.t1 ID=Gchil2855.t1|Name=Gchil2855.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=207bp|location=Sequence derived from alignment at tig00004406_pilon:923835..924136- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGTCCGAACAGTACTGGGTATGGTTCATATGCAAAGTTATCAAAGA
CGCAAAGACGGTGCGGGCTTTCTTCGAAGATATTACCACCCAGTGCCATT
TTCAGACAGAAAGTCTCTCTATCTGCTATACGGAGGAGCTGTGCCTACGA
AGGCTGGTCACGTCTAACAGCACCTCGCCCATCGAATGCACACACTTCGC
CCTTTGA
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