Gchil2854.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2854.t1
Unique NameGchil2854.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length357
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004406_piloncontigtig00004406_pilon:922731..923801 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4098.XP_009622404.1
PFAMsPfkB
Max annot lvl35493|Streptophyta
Evalue1.48e-21
EggNOG OGsCOG0524@1|root,KOG2855@2759|Eukaryota,37M1C@33090|Viridiplantae,3G7V5@35493|Streptophyta,44IPN@71274|asterids
DescriptionpfkB family carbohydrate kinase
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2854Gchil2854Gracilaria chilensis NLEC103_M9 malegenetig00004406_pilon 922731..923801 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2854.t1.start1Gchil2854.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004406_pilon 922731..922733 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2854.t1.CDS1Gchil2854.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 922731..923801 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2854.t1.exon1Gchil2854.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 922731..923801 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2854.t1.stop1Gchil2854.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004406_pilon 923799..923801 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2854.t1Gchil2854.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004406_pilon 922731..923801 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2854.t1 ID=Gchil2854.t1|Name=Gchil2854.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=357bp
MTSKEIISPEAIDIVSVGNMCIDIMLPISHYPICQSEHQGLRNGAFFEIG
GSLNALISATRLNARTAAVAYISGVRKDLHPSVLLLSQYLRNAARDEGID
VQGLVTHSNVTVPTCAALFDPHGSHTFLASNEDVQDQNLFGKRLPNAMKD
RVRDSKALIIDGYALHSDRELVQQCLQVAIQNKCEIWVDPQAATESLLQR
NDELFLQILNSAHGISLNFDEAKALTGKEDLADIVHALPFFSNASTILLK
DGPRGCHAFTRSKIGEEICSAPGFNLGETYRDSIGAGDAFIGAFLAGKLV
HRLELRECCLLANSMAAATCKQHGAGIYGIGRRAQAAQMLSLSSIDASRI
LQALQL*
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spliced messenger RNA

>Gchil2854.t1 ID=Gchil2854.t1|Name=Gchil2854.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1071bp|location=Sequence derived from alignment at tig00004406_pilon:922731..923801+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTTCTAAAGAAATTATTTCTCCCGAGGCGATAGACATTGTTTCCGT
TGGAAATATGTGCATTGATATCATGCTGCCGATCAGTCATTACCCTATTT
GTCAGAGTGAACATCAAGGGCTAAGAAATGGTGCTTTCTTTGAGATTGGT
GGCTCTCTCAACGCGCTGATAAGCGCTACAAGATTGAACGCAAGAACGGC
CGCCGTTGCTTACATAAGCGGCGTAAGAAAAGACCTTCATCCGAGTGTTC
TATTACTTTCTCAGTATTTGCGAAACGCAGCTCGGGACGAAGGTATTGAT
GTGCAAGGCTTGGTCACTCATTCGAATGTAACAGTTCCCACATGTGCCGC
TCTCTTCGATCCACATGGGTCTCACACTTTCCTTGCGTCAAATGAGGACG
TTCAGGATCAAAATCTCTTTGGTAAACGGCTTCCAAATGCCATGAAAGAC
CGTGTAAGGGATTCAAAAGCTCTAATAATTGACGGTTACGCACTACATAG
TGATCGAGAATTAGTGCAACAATGTTTGCAAGTTGCAATACAAAACAAAT
GTGAGATTTGGGTCGATCCACAAGCAGCGACCGAGTCCCTCTTGCAACGA
AATGATGAACTTTTCTTGCAGATTCTGAACTCTGCGCATGGTATCTCGTT
GAATTTTGATGAAGCTAAGGCGCTAACTGGCAAAGAAGACCTTGCAGATA
TAGTTCATGCATTACCATTCTTTTCGAATGCGAGTACAATTCTCCTCAAA
GATGGCCCTCGCGGATGTCATGCATTTACCAGAAGTAAGATTGGAGAAGA
AATTTGCAGTGCACCAGGGTTTAATCTGGGTGAAACTTACAGAGACTCGA
TTGGAGCGGGTGATGCGTTCATAGGTGCGTTTTTGGCCGGTAAATTGGTT
CACCGACTCGAGCTCAGGGAGTGCTGCCTTCTTGCGAATTCCATGGCTGC
TGCAACTTGTAAGCAACACGGAGCAGGAATCTATGGGATAGGACGTCGAG
CCCAAGCAGCGCAAATGCTTTCGTTGAGCTCTATAGACGCAAGTCGAATT
TTGCAAGCCCTGCAGCTATAG
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protein sequence of Gchil2854.t1

>Gchil2854.t1 ID=Gchil2854.t1|Name=Gchil2854.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=357bp
MTSKEIISPEAIDIVSVGNMCIDIMLPISHYPICQSEHQGLRNGAFFEIG
GSLNALISATRLNARTAAVAYISGVRKDLHPSVLLLSQYLRNAARDEGID
VQGLVTHSNVTVPTCAALFDPHGSHTFLASNEDVQDQNLFGKRLPNAMKD
RVRDSKALIIDGYALHSDRELVQQCLQVAIQNKCEIWVDPQAATESLLQR
NDELFLQILNSAHGISLNFDEAKALTGKEDLADIVHALPFFSNASTILLK
DGPRGCHAFTRSKIGEEICSAPGFNLGETYRDSIGAGDAFIGAFLAGKLV
HRLELRECCLLANSMAAATCKQHGAGIYGIGRRAQAAQMLSLSSIDASRI
LQALQL*
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mRNA from alignment at tig00004406_pilon:922731..923801+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2854.t1 ID=Gchil2854.t1|Name=Gchil2854.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1071bp|location=Sequence derived from alignment at tig00004406_pilon:922731..923801+ (Gracilaria chilensis NLEC103_M9 male)
ATGACTTCTAAAGAAATTATTTCTCCCGAGGCGATAGACATTGTTTCCGT
TGGAAATATGTGCATTGATATCATGCTGCCGATCAGTCATTACCCTATTT
GTCAGAGTGAACATCAAGGGCTAAGAAATGGTGCTTTCTTTGAGATTGGT
GGCTCTCTCAACGCGCTGATAAGCGCTACAAGATTGAACGCAAGAACGGC
CGCCGTTGCTTACATAAGCGGCGTAAGAAAAGACCTTCATCCGAGTGTTC
TATTACTTTCTCAGTATTTGCGAAACGCAGCTCGGGACGAAGGTATTGAT
GTGCAAGGCTTGGTCACTCATTCGAATGTAACAGTTCCCACATGTGCCGC
TCTCTTCGATCCACATGGGTCTCACACTTTCCTTGCGTCAAATGAGGACG
TTCAGGATCAAAATCTCTTTGGTAAACGGCTTCCAAATGCCATGAAAGAC
CGTGTAAGGGATTCAAAAGCTCTAATAATTGACGGTTACGCACTACATAG
TGATCGAGAATTAGTGCAACAATGTTTGCAAGTTGCAATACAAAACAAAT
GTGAGATTTGGGTCGATCCACAAGCAGCGACCGAGTCCCTCTTGCAACGA
AATGATGAACTTTTCTTGCAGATTCTGAACTCTGCGCATGGTATCTCGTT
GAATTTTGATGAAGCTAAGGCGCTAACTGGCAAAGAAGACCTTGCAGATA
TAGTTCATGCATTACCATTCTTTTCGAATGCGAGTACAATTCTCCTCAAA
GATGGCCCTCGCGGATGTCATGCATTTACCAGAAGTAAGATTGGAGAAGA
AATTTGCAGTGCACCAGGGTTTAATCTGGGTGAAACTTACAGAGACTCGA
TTGGAGCGGGTGATGCGTTCATAGGTGCGTTTTTGGCCGGTAAATTGGTT
CACCGACTCGAGCTCAGGGAGTGCTGCCTTCTTGCGAATTCCATGGCTGC
TGCAACTTGTAAGCAACACGGAGCAGGAATCTATGGGATAGGACGTCGAG
CCCAAGCAGCGCAAATGCTTTCGTTGAGCTCTATAGACGCAAGTCGAATT
TTGCAAGCCCTGCAGCTATAG
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Coding sequence (CDS) from alignment at tig00004406_pilon:922731..923801+

>Gchil2854.t1 ID=Gchil2854.t1|Name=Gchil2854.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1071bp|location=Sequence derived from alignment at tig00004406_pilon:922731..923801+ (Gracilaria chilensis NLEC103_M9 male)
ATGACTTCTAAAGAAATTATTTCTCCCGAGGCGATAGACATTGTTTCCGT
TGGAAATATGTGCATTGATATCATGCTGCCGATCAGTCATTACCCTATTT
GTCAGAGTGAACATCAAGGGCTAAGAAATGGTGCTTTCTTTGAGATTGGT
GGCTCTCTCAACGCGCTGATAAGCGCTACAAGATTGAACGCAAGAACGGC
CGCCGTTGCTTACATAAGCGGCGTAAGAAAAGACCTTCATCCGAGTGTTC
TATTACTTTCTCAGTATTTGCGAAACGCAGCTCGGGACGAAGGTATTGAT
GTGCAAGGCTTGGTCACTCATTCGAATGTAACAGTTCCCACATGTGCCGC
TCTCTTCGATCCACATGGGTCTCACACTTTCCTTGCGTCAAATGAGGACG
TTCAGGATCAAAATCTCTTTGGTAAACGGCTTCCAAATGCCATGAAAGAC
CGTGTAAGGGATTCAAAAGCTCTAATAATTGACGGTTACGCACTACATAG
TGATCGAGAATTAGTGCAACAATGTTTGCAAGTTGCAATACAAAACAAAT
GTGAGATTTGGGTCGATCCACAAGCAGCGACCGAGTCCCTCTTGCAACGA
AATGATGAACTTTTCTTGCAGATTCTGAACTCTGCGCATGGTATCTCGTT
GAATTTTGATGAAGCTAAGGCGCTAACTGGCAAAGAAGACCTTGCAGATA
TAGTTCATGCATTACCATTCTTTTCGAATGCGAGTACAATTCTCCTCAAA
GATGGCCCTCGCGGATGTCATGCATTTACCAGAAGTAAGATTGGAGAAGA
AATTTGCAGTGCACCAGGGTTTAATCTGGGTGAAACTTACAGAGACTCGA
TTGGAGCGGGTGATGCGTTCATAGGTGCGTTTTTGGCCGGTAAATTGGTT
CACCGACTCGAGCTCAGGGAGTGCTGCCTTCTTGCGAATTCCATGGCTGC
TGCAACTTGTAAGCAACACGGAGCAGGAATCTATGGGATAGGACGTCGAG
CCCAAGCAGCGCAAATGCTTTCGTTGAGCTCTATAGACGCAAGTCGAATT
TTGCAAGCCCTGCAGCTATAG
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