Gchil2853.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2853.t1
Unique NameGchil2853.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length472
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004406_piloncontigtig00004406_pilon:917637..919052 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1173028.ANKO01000174_gene2669
PFAMsAmidohydro_2
Max annot lvl1117|Cyanobacteria
Evalue3.25e-68
EggNOG OGsCOG2159@1|root,COG2159@2|Bacteria,1G2HJ@1117|Cyanobacteria,1H9XN@1150|Oscillatoriales
DescriptionAmidohydrolase
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2853Gchil2853Gracilaria chilensis NLEC103_M9 malegenetig00004406_pilon 917637..919052 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2853.t1.stop1Gchil2853.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004406_pilon 917637..917639 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2853.t1.CDS1Gchil2853.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 917637..919052 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2853.t1.exon1Gchil2853.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 917637..919052 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2853.t1.start1Gchil2853.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004406_pilon 919050..919052 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2853.t1Gchil2853.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004406_pilon 917637..919052 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2853.t1 ID=Gchil2853.t1|Name=Gchil2853.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=472bp
MDLSAHSITQTPIYSELEAVADATLLVDNHAHPISRNAPRPLSSILTEAA
TTSFDPYPASATLAYNRGMRDISALLEHETEEAQVFYEAPMSSMPAHTPA
SPSPETPTPVTQSEQSSSDEELAFDGSAPGHKALEQRRTALGVVRLASRC
FSAAGIAAILVDDGIDIPAKISLAEMSAFGVPVVRRVLRLEVEAESVIRE
LVKENKDGVWRRVGRPSSPEKRARTTFRSVMFLGRLRKRLSPLQVGVIAF
KSIAAYRSGLNIYFNCSDEELDEKLQETTNSMTRTEGGEFQLRLRNKEII
GRVLQMALEVADQHDIPIQFHCGFGDTDLRLEKANPLLLKPMLESFPSVK
VVLLHAAWPFVREAAYLTSVFRNCFLDFGLAIPLLSVRGMFRALDSAMEV
APVSKLLYSSDAHTVPDAFYLGARWGRRVVAAVVSANVHSGDLTVFEGKA
AVRKILAENAIMLYKLPVQSS*
back to top

spliced messenger RNA

>Gchil2853.t1 ID=Gchil2853.t1|Name=Gchil2853.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1416bp|location=Sequence derived from alignment at tig00004406_pilon:917637..919052- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCTCTCAGCGCACTCCATAACGCAAACACCAATCTATTCAGAACT
CGAAGCTGTCGCCGATGCTACGCTGCTGGTCGATAACCATGCTCATCCAA
TCAGCCGAAATGCGCCCCGCCCGTTGTCGAGCATATTAACTGAGGCCGCA
ACGACCTCGTTCGATCCATACCCAGCGAGCGCGACGTTGGCGTATAATCG
CGGTATGCGCGATATATCAGCGCTTTTGGAGCATGAAACTGAGGAAGCTC
AAGTGTTTTATGAAGCCCCAATGTCTTCTATGCCGGCGCACACACCCGCG
TCACCCTCTCCCGAGACGCCAACACCCGTAACTCAATCCGAGCAGAGTTC
TTCTGATGAAGAACTCGCGTTTGACGGTTCTGCACCTGGACACAAGGCTT
TAGAACAACGTCGCACCGCTCTTGGTGTGGTACGTCTTGCCAGCAGGTGT
TTCTCAGCCGCTGGAATAGCGGCGATTTTGGTTGACGACGGTATAGACAT
ACCTGCAAAGATTTCTCTGGCAGAGATGAGCGCGTTTGGAGTGCCGGTTG
TGCGAAGGGTGTTGCGCTTGGAGGTAGAGGCTGAGTCAGTTATCAGGGAG
CTTGTCAAAGAAAATAAAGACGGGGTTTGGCGAAGAGTTGGTAGACCATC
GTCTCCTGAAAAGAGAGCACGAACCACATTCAGAAGCGTCATGTTTCTTG
GACGACTGAGAAAGCGTCTTTCTCCTCTACAGGTGGGGGTTATCGCATTC
AAAAGTATTGCAGCTTACCGTTCTGGTCTGAATATCTATTTCAACTGTTC
GGACGAAGAATTGGATGAAAAGCTGCAAGAGACAACCAACTCCATGACTA
GAACAGAAGGGGGTGAGTTTCAGCTTCGCTTAAGAAACAAAGAAATCATT
GGTCGCGTTCTCCAAATGGCTCTTGAAGTCGCTGATCAACACGACATACC
CATTCAATTTCACTGCGGGTTCGGTGATACAGACCTGAGACTAGAAAAAG
CAAATCCGCTGTTGCTGAAGCCGATGCTCGAAAGTTTCCCGAGTGTGAAA
GTTGTATTACTTCACGCAGCCTGGCCTTTTGTTCGAGAAGCTGCCTACCT
GACATCAGTGTTTCGCAACTGCTTTCTTGACTTCGGACTTGCAATCCCGT
TGCTCTCGGTACGCGGAATGTTTCGAGCGCTAGATAGTGCAATGGAAGTT
GCGCCAGTATCAAAGCTGTTGTACTCTAGCGATGCTCATACAGTTCCTGA
TGCGTTCTATCTCGGAGCTCGATGGGGAAGGCGGGTGGTGGCCGCGGTAG
TATCGGCCAATGTGCATTCCGGGGACTTGACCGTTTTTGAGGGAAAGGCA
GCGGTGCGCAAAATTTTGGCGGAGAATGCAATCATGTTGTACAAACTCCC
AGTCCAGTCCAGCTAA
back to top

protein sequence of Gchil2853.t1

>Gchil2853.t1 ID=Gchil2853.t1|Name=Gchil2853.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=472bp
MDLSAHSITQTPIYSELEAVADATLLVDNHAHPISRNAPRPLSSILTEAA
TTSFDPYPASATLAYNRGMRDISALLEHETEEAQVFYEAPMSSMPAHTPA
SPSPETPTPVTQSEQSSSDEELAFDGSAPGHKALEQRRTALGVVRLASRC
FSAAGIAAILVDDGIDIPAKISLAEMSAFGVPVVRRVLRLEVEAESVIRE
LVKENKDGVWRRVGRPSSPEKRARTTFRSVMFLGRLRKRLSPLQVGVIAF
KSIAAYRSGLNIYFNCSDEELDEKLQETTNSMTRTEGGEFQLRLRNKEII
GRVLQMALEVADQHDIPIQFHCGFGDTDLRLEKANPLLLKPMLESFPSVK
VVLLHAAWPFVREAAYLTSVFRNCFLDFGLAIPLLSVRGMFRALDSAMEV
APVSKLLYSSDAHTVPDAFYLGARWGRRVVAAVVSANVHSGDLTVFEGKA
AVRKILAENAIMLYKLPVQSS*
back to top

mRNA from alignment at tig00004406_pilon:917637..919052-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2853.t1 ID=Gchil2853.t1|Name=Gchil2853.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1416bp|location=Sequence derived from alignment at tig00004406_pilon:917637..919052- (Gracilaria chilensis NLEC103_M9 male)
ATGGACCTCTCAGCGCACTCCATAACGCAAACACCAATCTATTCAGAACT
CGAAGCTGTCGCCGATGCTACGCTGCTGGTCGATAACCATGCTCATCCAA
TCAGCCGAAATGCGCCCCGCCCGTTGTCGAGCATATTAACTGAGGCCGCA
ACGACCTCGTTCGATCCATACCCAGCGAGCGCGACGTTGGCGTATAATCG
CGGTATGCGCGATATATCAGCGCTTTTGGAGCATGAAACTGAGGAAGCTC
AAGTGTTTTATGAAGCCCCAATGTCTTCTATGCCGGCGCACACACCCGCG
TCACCCTCTCCCGAGACGCCAACACCCGTAACTCAATCCGAGCAGAGTTC
TTCTGATGAAGAACTCGCGTTTGACGGTTCTGCACCTGGACACAAGGCTT
TAGAACAACGTCGCACCGCTCTTGGTGTGGTACGTCTTGCCAGCAGGTGT
TTCTCAGCCGCTGGAATAGCGGCGATTTTGGTTGACGACGGTATAGACAT
ACCTGCAAAGATTTCTCTGGCAGAGATGAGCGCGTTTGGAGTGCCGGTTG
TGCGAAGGGTGTTGCGCTTGGAGGTAGAGGCTGAGTCAGTTATCAGGGAG
CTTGTCAAAGAAAATAAAGACGGGGTTTGGCGAAGAGTTGGTAGACCATC
GTCTCCTGAAAAGAGAGCACGAACCACATTCAGAAGCGTCATGTTTCTTG
GACGACTGAGAAAGCGTCTTTCTCCTCTACAGGTGGGGGTTATCGCATTC
AAAAGTATTGCAGCTTACCGTTCTGGTCTGAATATCTATTTCAACTGTTC
GGACGAAGAATTGGATGAAAAGCTGCAAGAGACAACCAACTCCATGACTA
GAACAGAAGGGGGTGAGTTTCAGCTTCGCTTAAGAAACAAAGAAATCATT
GGTCGCGTTCTCCAAATGGCTCTTGAAGTCGCTGATCAACACGACATACC
CATTCAATTTCACTGCGGGTTCGGTGATACAGACCTGAGACTAGAAAAAG
CAAATCCGCTGTTGCTGAAGCCGATGCTCGAAAGTTTCCCGAGTGTGAAA
GTTGTATTACTTCACGCAGCCTGGCCTTTTGTTCGAGAAGCTGCCTACCT
GACATCAGTGTTTCGCAACTGCTTTCTTGACTTCGGACTTGCAATCCCGT
TGCTCTCGGTACGCGGAATGTTTCGAGCGCTAGATAGTGCAATGGAAGTT
GCGCCAGTATCAAAGCTGTTGTACTCTAGCGATGCTCATACAGTTCCTGA
TGCGTTCTATCTCGGAGCTCGATGGGGAAGGCGGGTGGTGGCCGCGGTAG
TATCGGCCAATGTGCATTCCGGGGACTTGACCGTTTTTGAGGGAAAGGCA
GCGGTGCGCAAAATTTTGGCGGAGAATGCAATCATGTTGTACAAACTCCC
AGTCCAGTCCAGCTAA
back to top

Coding sequence (CDS) from alignment at tig00004406_pilon:917637..919052-

>Gchil2853.t1 ID=Gchil2853.t1|Name=Gchil2853.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1416bp|location=Sequence derived from alignment at tig00004406_pilon:917637..919052- (Gracilaria chilensis NLEC103_M9 male)
ATGGACCTCTCAGCGCACTCCATAACGCAAACACCAATCTATTCAGAACT
CGAAGCTGTCGCCGATGCTACGCTGCTGGTCGATAACCATGCTCATCCAA
TCAGCCGAAATGCGCCCCGCCCGTTGTCGAGCATATTAACTGAGGCCGCA
ACGACCTCGTTCGATCCATACCCAGCGAGCGCGACGTTGGCGTATAATCG
CGGTATGCGCGATATATCAGCGCTTTTGGAGCATGAAACTGAGGAAGCTC
AAGTGTTTTATGAAGCCCCAATGTCTTCTATGCCGGCGCACACACCCGCG
TCACCCTCTCCCGAGACGCCAACACCCGTAACTCAATCCGAGCAGAGTTC
TTCTGATGAAGAACTCGCGTTTGACGGTTCTGCACCTGGACACAAGGCTT
TAGAACAACGTCGCACCGCTCTTGGTGTGGTACGTCTTGCCAGCAGGTGT
TTCTCAGCCGCTGGAATAGCGGCGATTTTGGTTGACGACGGTATAGACAT
ACCTGCAAAGATTTCTCTGGCAGAGATGAGCGCGTTTGGAGTGCCGGTTG
TGCGAAGGGTGTTGCGCTTGGAGGTAGAGGCTGAGTCAGTTATCAGGGAG
CTTGTCAAAGAAAATAAAGACGGGGTTTGGCGAAGAGTTGGTAGACCATC
GTCTCCTGAAAAGAGAGCACGAACCACATTCAGAAGCGTCATGTTTCTTG
GACGACTGAGAAAGCGTCTTTCTCCTCTACAGGTGGGGGTTATCGCATTC
AAAAGTATTGCAGCTTACCGTTCTGGTCTGAATATCTATTTCAACTGTTC
GGACGAAGAATTGGATGAAAAGCTGCAAGAGACAACCAACTCCATGACTA
GAACAGAAGGGGGTGAGTTTCAGCTTCGCTTAAGAAACAAAGAAATCATT
GGTCGCGTTCTCCAAATGGCTCTTGAAGTCGCTGATCAACACGACATACC
CATTCAATTTCACTGCGGGTTCGGTGATACAGACCTGAGACTAGAAAAAG
CAAATCCGCTGTTGCTGAAGCCGATGCTCGAAAGTTTCCCGAGTGTGAAA
GTTGTATTACTTCACGCAGCCTGGCCTTTTGTTCGAGAAGCTGCCTACCT
GACATCAGTGTTTCGCAACTGCTTTCTTGACTTCGGACTTGCAATCCCGT
TGCTCTCGGTACGCGGAATGTTTCGAGCGCTAGATAGTGCAATGGAAGTT
GCGCCAGTATCAAAGCTGTTGTACTCTAGCGATGCTCATACAGTTCCTGA
TGCGTTCTATCTCGGAGCTCGATGGGGAAGGCGGGTGGTGGCCGCGGTAG
TATCGGCCAATGTGCATTCCGGGGACTTGACCGTTTTTGAGGGAAAGGCA
GCGGTGCGCAAAATTTTGGCGGAGAATGCAATCATGTTGTACAAACTCCC
AGTCCAGTCCAGCTAA
back to top