Gchil2852.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2852.t1
Unique Name	Gchil2852.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	656

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004406_pilon	contig	tig00004406_pilon:914870..916837 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703747.1
Preferred name	SUCO
PFAMs	Sad1_UNC
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K01528
KEGG Pathway	ko04072,ko04144,ko04721,ko04961,ko05100,map04072,map04144,map04721,map04961,map05100
GOs	GO:0000278,GO:0000281,GO:0000910,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005773,GO:0005783,GO:0005789,GO:0005791,GO:0005886,GO:0006457,GO:0006996,GO:0006997,GO:0007049,GO:0007154,GO:0007267,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010712,GO:0010714,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0019222,GO:0022402,GO:0023052,GO:0030154,GO:0030176,GO:0030278,GO:0030587,GO:0031154,GO:0031224,GO:0031225,GO:0031226,GO:0031227,GO:0031967,GO:0031975,GO:0031984,GO:0032502,GO:0032965,GO:0032967,GO:0034103,GO:0034975,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043621,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045165,GO:0045168,GO:0045595,GO:0045597,GO:0045667,GO:0045669,GO:0045778,GO:0046331,GO:0046658,GO:0046850,GO:0048518,GO:0048522,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051239,GO:0051240,GO:0051301,GO:0051703,GO:0051704,GO:0061640,GO:0065007,GO:0071840,GO:0071944,GO:0090702,GO:0098827,GO:0099120,GO:1903047
Evalue	4.35e-80
EggNOG OGs	KOG1396@1\|root,KOG1396@2759\|Eukaryota
EC	3.6.5.5
Description	positive regulation of collagen biosynthetic process
COG category	O
BRITE	ko00000,ko00001,ko01000,ko04131,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2852	Gchil2852	Gracilaria chilensis NLEC103_M9 male	gene	tig00004406_pilon 914870..916837 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2852.t1.start1	Gchil2852.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004406_pilon 914870..914872 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2852.t1.CDS1	Gchil2852.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004406_pilon 914870..916837 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2852.t1.exon1	Gchil2852.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004406_pilon 914870..916837 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2852.t1.stop1	Gchil2852.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004406_pilon 916835..916837 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2852.t1	Gchil2852.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004406_pilon 914870..916837 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004406_pilon:914870..916837+
coding sequence from alignment at tig00004406_pilon:914870..916837+

mRNA sequence

>Gchil2852.t1 ID=Gchil2852.t1|Name=Gchil2852.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=656bp
MNAIQSASFFFTPTTLMPLIVSDFSIPLSLSTVPIAVGKIAYVLLLIPGG
IVVDRYGPRICVLLAIAGLALVMTMYAAFIVSFPSQLLAHVLMAVFASVS
GVPIYSIFIAHWFHTAIGLAMGLVLAGYSAAGTIAPLVLGPIAAEMGWRV
AMACICALLWCVGLPIAYFFLKQPHHVHPAAPFDFVSEPQRSAFPPQVPS
VPSIIPDRPLVSHNSFTFAGFALSYILLQYCFGCFGENIMFYLTIDRFLS
LSFASLFFSALNLASFTAKLVGGHLGDRFDRFHVAAVASALAAIGITFLF
NLGAGLDHNYLPKLSESVFPVLIFAILFGFGYGATFNSLYALTPLVFGKQ
NLGRTQSTFFGLGLCGNAVGSVLTGVLRSKHGTYQLPFFLAALVCTLNFF
VFSFTRMSLGGSISAMKVLAEQRSAAMFECDETEISPSISPRHPSFLTSS
ASFSKTSPSPAGAHGPRHTSSPALNRYDGQVMRTAMYDSIEMLPAAHGTI
PRSLSRHSGTGMFPERGYPIVRDWSNSSLRSQHQGTFAASPFPQGSVPRG
TNLQRSSTFEAMIDSGILSASMEAVGFLGTTDATLRIASPTRRTPATSPL
IRSTPSPSPMQRQRYSASPHSASTATHAGHTVLPSLPPLSAKGLSDRPDT
APERP*

spliced messenger RNA

>Gchil2852.t1 ID=Gchil2852.t1|Name=Gchil2852.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1968bp|location=Sequence derived from alignment at tig00004406_pilon:914870..916837+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGCAATCCAGTCCGCCAGCTTCTTCTTCACTCCGACCACCCTCAT
GCCGCTTATCGTCTCCGACTTTTCCATCCCGCTCTCGCTATCTACCGTTC
CCATCGCCGTCGGAAAGATCGCCTACGTCCTTCTGCTTATTCCCGGCGGC
ATTGTCGTCGACCGTTACGGTCCGCGCATCTGCGTGCTGCTGGCCATCGC
CGGTTTGGCGCTCGTCATGACCATGTACGCCGCTTTCATCGTCTCCTTTC
CGTCCCAGCTGCTGGCCCATGTCCTCATGGCCGTCTTTGCCAGTGTCAGT
GGCGTTCCCATCTATTCCATTTTCATAGCTCATTGGTTTCACACCGCCAT
TGGCCTTGCCATGGGGCTTGTGCTGGCCGGCTACTCGGCCGCCGGAACCA
TTGCTCCGTTGGTGCTGGGACCCATCGCCGCCGAAATGGGTTGGCGAGTC
GCCATGGCATGCATATGCGCCTTGCTCTGGTGCGTCGGACTCCCCATAGC
TTACTTTTTCCTCAAACAGCCCCATCACGTTCACCCCGCCGCCCCCTTCG
ACTTTGTATCCGAACCGCAACGCTCTGCTTTTCCTCCCCAAGTCCCGTCT
GTGCCCTCCATCATTCCCGATCGCCCGCTCGTCAGTCACAACTCGTTTAC
CTTTGCCGGGTTTGCGCTTTCGTACATTCTGCTACAGTACTGCTTCGGTT
GCTTTGGGGAGAACATCATGTTCTATCTCACAATTGACCGCTTTCTGTCC
CTCTCCTTTGCTTCCCTTTTCTTCAGCGCTCTCAATCTTGCTTCATTCAC
GGCCAAGCTCGTCGGTGGTCACCTGGGAGATCGCTTTGATCGCTTCCACG
TTGCCGCCGTTGCCAGTGCGCTGGCCGCCATTGGCATCACTTTTCTCTTC
AACCTTGGCGCTGGCCTGGATCACAACTACTTGCCCAAACTTTCCGAATC
TGTGTTTCCCGTCTTGATCTTTGCTATTTTGTTTGGCTTTGGATATGGAG
CCACTTTCAATAGCCTGTATGCGCTCACGCCCCTCGTATTTGGAAAGCAG
AACCTGGGCCGCACTCAAAGCACCTTCTTCGGACTTGGCCTCTGTGGTAA
CGCCGTCGGATCCGTGCTCACCGGCGTGTTGCGCTCCAAACACGGTACAT
ACCAACTTCCGTTTTTCCTTGCCGCGCTAGTGTGCACTTTAAACTTTTTT
GTTTTCAGCTTTACTCGCATGTCTCTTGGCGGAAGCATCTCTGCAATGAA
AGTGTTGGCGGAACAGCGTTCTGCCGCAATGTTCGAGTGTGATGAAACCG
AAATCTCTCCTTCCATTTCACCGCGCCACCCGTCGTTTCTCACTTCTTCA
GCCAGTTTCTCTAAAACGTCACCTTCGCCCGCTGGAGCTCACGGTCCCAG
ACACACTTCGTCCCCTGCTCTGAATCGGTATGATGGGCAAGTAATGCGCA
CTGCTATGTACGATTCAATTGAAATGCTCCCTGCTGCACATGGTACAATC
CCTCGCAGCCTTAGTCGTCATAGTGGCACTGGTATGTTTCCAGAGCGTGG
TTATCCCATTGTACGAGACTGGTCCAATTCGTCTCTGCGCTCGCAGCATC
AAGGCACTTTTGCCGCTTCACCATTTCCCCAGGGCAGTGTACCACGTGGT
ACCAATTTGCAAAGGTCTTCTACGTTTGAAGCTATGATTGATTCTGGAAT
TCTTTCGGCTAGTATGGAAGCCGTCGGATTTTTGGGTACGACTGATGCCA
CGCTCAGAATTGCATCTCCTACACGCAGAACTCCAGCCACAAGTCCGTTG
ATTCGAAGTACACCCAGCCCGTCCCCGATGCAAAGACAGAGATATTCTGC
TTCGCCGCATTCGGCTTCGACTGCAACGCATGCTGGCCATACTGTGTTGC
CTTCTTTGCCCCCGCTCTCTGCCAAAGGCCTTTCCGATCGGCCCGACACA
GCACCTGAGCGTCCATGA

protein sequence of Gchil2852.t1

>Gchil2852.t1 ID=Gchil2852.t1|Name=Gchil2852.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=656bp
MNAIQSASFFFTPTTLMPLIVSDFSIPLSLSTVPIAVGKIAYVLLLIPGG
IVVDRYGPRICVLLAIAGLALVMTMYAAFIVSFPSQLLAHVLMAVFASVS
GVPIYSIFIAHWFHTAIGLAMGLVLAGYSAAGTIAPLVLGPIAAEMGWRV
AMACICALLWCVGLPIAYFFLKQPHHVHPAAPFDFVSEPQRSAFPPQVPS
VPSIIPDRPLVSHNSFTFAGFALSYILLQYCFGCFGENIMFYLTIDRFLS
LSFASLFFSALNLASFTAKLVGGHLGDRFDRFHVAAVASALAAIGITFLF
NLGAGLDHNYLPKLSESVFPVLIFAILFGFGYGATFNSLYALTPLVFGKQ
NLGRTQSTFFGLGLCGNAVGSVLTGVLRSKHGTYQLPFFLAALVCTLNFF
VFSFTRMSLGGSISAMKVLAEQRSAAMFECDETEISPSISPRHPSFLTSS
ASFSKTSPSPAGAHGPRHTSSPALNRYDGQVMRTAMYDSIEMLPAAHGTI
PRSLSRHSGTGMFPERGYPIVRDWSNSSLRSQHQGTFAASPFPQGSVPRG
TNLQRSSTFEAMIDSGILSASMEAVGFLGTTDATLRIASPTRRTPATSPL
IRSTPSPSPMQRQRYSASPHSASTATHAGHTVLPSLPPLSAKGLSDRPDT
APERP*

mRNA from alignment at tig00004406_pilon:914870..916837+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2852.t1 ID=Gchil2852.t1|Name=Gchil2852.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1968bp|location=Sequence derived from alignment at tig00004406_pilon:914870..916837+ (Gracilaria chilensis NLEC103_M9 male)
ATGAACGCAATCCAGTCCGCCAGCTTCTTCTTCACTCCGACCACCCTCAT
GCCGCTTATCGTCTCCGACTTTTCCATCCCGCTCTCGCTATCTACCGTTC
CCATCGCCGTCGGAAAGATCGCCTACGTCCTTCTGCTTATTCCCGGCGGC
ATTGTCGTCGACCGTTACGGTCCGCGCATCTGCGTGCTGCTGGCCATCGC
CGGTTTGGCGCTCGTCATGACCATGTACGCCGCTTTCATCGTCTCCTTTC
CGTCCCAGCTGCTGGCCCATGTCCTCATGGCCGTCTTTGCCAGTGTCAGT
GGCGTTCCCATCTATTCCATTTTCATAGCTCATTGGTTTCACACCGCCAT
TGGCCTTGCCATGGGGCTTGTGCTGGCCGGCTACTCGGCCGCCGGAACCA
TTGCTCCGTTGGTGCTGGGACCCATCGCCGCCGAAATGGGTTGGCGAGTC
GCCATGGCATGCATATGCGCCTTGCTCTGGTGCGTCGGACTCCCCATAGC
TTACTTTTTCCTCAAACAGCCCCATCACGTTCACCCCGCCGCCCCCTTCG
ACTTTGTATCCGAACCGCAACGCTCTGCTTTTCCTCCCCAAGTCCCGTCT
GTGCCCTCCATCATTCCCGATCGCCCGCTCGTCAGTCACAACTCGTTTAC
CTTTGCCGGGTTTGCGCTTTCGTACATTCTGCTACAGTACTGCTTCGGTT
GCTTTGGGGAGAACATCATGTTCTATCTCACAATTGACCGCTTTCTGTCC
CTCTCCTTTGCTTCCCTTTTCTTCAGCGCTCTCAATCTTGCTTCATTCAC
GGCCAAGCTCGTCGGTGGTCACCTGGGAGATCGCTTTGATCGCTTCCACG
TTGCCGCCGTTGCCAGTGCGCTGGCCGCCATTGGCATCACTTTTCTCTTC
AACCTTGGCGCTGGCCTGGATCACAACTACTTGCCCAAACTTTCCGAATC
TGTGTTTCCCGTCTTGATCTTTGCTATTTTGTTTGGCTTTGGATATGGAG
CCACTTTCAATAGCCTGTATGCGCTCACGCCCCTCGTATTTGGAAAGCAG
AACCTGGGCCGCACTCAAAGCACCTTCTTCGGACTTGGCCTCTGTGGTAA
CGCCGTCGGATCCGTGCTCACCGGCGTGTTGCGCTCCAAACACGGTACAT
ACCAACTTCCGTTTTTCCTTGCCGCGCTAGTGTGCACTTTAAACTTTTTT
GTTTTCAGCTTTACTCGCATGTCTCTTGGCGGAAGCATCTCTGCAATGAA
AGTGTTGGCGGAACAGCGTTCTGCCGCAATGTTCGAGTGTGATGAAACCG
AAATCTCTCCTTCCATTTCACCGCGCCACCCGTCGTTTCTCACTTCTTCA
GCCAGTTTCTCTAAAACGTCACCTTCGCCCGCTGGAGCTCACGGTCCCAG
ACACACTTCGTCCCCTGCTCTGAATCGGTATGATGGGCAAGTAATGCGCA
CTGCTATGTACGATTCAATTGAAATGCTCCCTGCTGCACATGGTACAATC
CCTCGCAGCCTTAGTCGTCATAGTGGCACTGGTATGTTTCCAGAGCGTGG
TTATCCCATTGTACGAGACTGGTCCAATTCGTCTCTGCGCTCGCAGCATC
AAGGCACTTTTGCCGCTTCACCATTTCCCCAGGGCAGTGTACCACGTGGT
ACCAATTTGCAAAGGTCTTCTACGTTTGAAGCTATGATTGATTCTGGAAT
TCTTTCGGCTAGTATGGAAGCCGTCGGATTTTTGGGTACGACTGATGCCA
CGCTCAGAATTGCATCTCCTACACGCAGAACTCCAGCCACAAGTCCGTTG
ATTCGAAGTACACCCAGCCCGTCCCCGATGCAAAGACAGAGATATTCTGC
TTCGCCGCATTCGGCTTCGACTGCAACGCATGCTGGCCATACTGTGTTGC
CTTCTTTGCCCCCGCTCTCTGCCAAAGGCCTTTCCGATCGGCCCGACACA
GCACCTGAGCGTCCATGA

Coding sequence (CDS) from alignment at tig00004406_pilon:914870..916837+

>Gchil2852.t1 ID=Gchil2852.t1|Name=Gchil2852.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1968bp|location=Sequence derived from alignment at tig00004406_pilon:914870..916837+ (Gracilaria chilensis NLEC103_M9 male)
ATGAACGCAATCCAGTCCGCCAGCTTCTTCTTCACTCCGACCACCCTCAT
GCCGCTTATCGTCTCCGACTTTTCCATCCCGCTCTCGCTATCTACCGTTC
CCATCGCCGTCGGAAAGATCGCCTACGTCCTTCTGCTTATTCCCGGCGGC
ATTGTCGTCGACCGTTACGGTCCGCGCATCTGCGTGCTGCTGGCCATCGC
CGGTTTGGCGCTCGTCATGACCATGTACGCCGCTTTCATCGTCTCCTTTC
CGTCCCAGCTGCTGGCCCATGTCCTCATGGCCGTCTTTGCCAGTGTCAGT
GGCGTTCCCATCTATTCCATTTTCATAGCTCATTGGTTTCACACCGCCAT
TGGCCTTGCCATGGGGCTTGTGCTGGCCGGCTACTCGGCCGCCGGAACCA
TTGCTCCGTTGGTGCTGGGACCCATCGCCGCCGAAATGGGTTGGCGAGTC
GCCATGGCATGCATATGCGCCTTGCTCTGGTGCGTCGGACTCCCCATAGC
TTACTTTTTCCTCAAACAGCCCCATCACGTTCACCCCGCCGCCCCCTTCG
ACTTTGTATCCGAACCGCAACGCTCTGCTTTTCCTCCCCAAGTCCCGTCT
GTGCCCTCCATCATTCCCGATCGCCCGCTCGTCAGTCACAACTCGTTTAC
CTTTGCCGGGTTTGCGCTTTCGTACATTCTGCTACAGTACTGCTTCGGTT
GCTTTGGGGAGAACATCATGTTCTATCTCACAATTGACCGCTTTCTGTCC
CTCTCCTTTGCTTCCCTTTTCTTCAGCGCTCTCAATCTTGCTTCATTCAC
GGCCAAGCTCGTCGGTGGTCACCTGGGAGATCGCTTTGATCGCTTCCACG
TTGCCGCCGTTGCCAGTGCGCTGGCCGCCATTGGCATCACTTTTCTCTTC
AACCTTGGCGCTGGCCTGGATCACAACTACTTGCCCAAACTTTCCGAATC
TGTGTTTCCCGTCTTGATCTTTGCTATTTTGTTTGGCTTTGGATATGGAG
CCACTTTCAATAGCCTGTATGCGCTCACGCCCCTCGTATTTGGAAAGCAG
AACCTGGGCCGCACTCAAAGCACCTTCTTCGGACTTGGCCTCTGTGGTAA
CGCCGTCGGATCCGTGCTCACCGGCGTGTTGCGCTCCAAACACGGTACAT
ACCAACTTCCGTTTTTCCTTGCCGCGCTAGTGTGCACTTTAAACTTTTTT
GTTTTCAGCTTTACTCGCATGTCTCTTGGCGGAAGCATCTCTGCAATGAA
AGTGTTGGCGGAACAGCGTTCTGCCGCAATGTTCGAGTGTGATGAAACCG
AAATCTCTCCTTCCATTTCACCGCGCCACCCGTCGTTTCTCACTTCTTCA
GCCAGTTTCTCTAAAACGTCACCTTCGCCCGCTGGAGCTCACGGTCCCAG
ACACACTTCGTCCCCTGCTCTGAATCGGTATGATGGGCAAGTAATGCGCA
CTGCTATGTACGATTCAATTGAAATGCTCCCTGCTGCACATGGTACAATC
CCTCGCAGCCTTAGTCGTCATAGTGGCACTGGTATGTTTCCAGAGCGTGG
TTATCCCATTGTACGAGACTGGTCCAATTCGTCTCTGCGCTCGCAGCATC
AAGGCACTTTTGCCGCTTCACCATTTCCCCAGGGCAGTGTACCACGTGGT
ACCAATTTGCAAAGGTCTTCTACGTTTGAAGCTATGATTGATTCTGGAAT
TCTTTCGGCTAGTATGGAAGCCGTCGGATTTTTGGGTACGACTGATGCCA
CGCTCAGAATTGCATCTCCTACACGCAGAACTCCAGCCACAAGTCCGTTG
ATTCGAAGTACACCCAGCCCGTCCCCGATGCAAAGACAGAGATATTCTGC
TTCGCCGCATTCGGCTTCGACTGCAACGCATGCTGGCCATACTGTGTTGC
CTTCTTTGCCCCCGCTCTCTGCCAAAGGCCTTTCCGATCGGCCCGACACA
GCACCTGAGCGTCCATGA