Gchil2849.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2849.t1
Unique NameGchil2849.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length192
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004406_piloncontigtig00004406_pilon:910846..911421 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX47022
PFAMsCpeS
Max annot lvl2759|Eukaryota
Evalue5.83e-59
EggNOG OGs28IBS@1|root,2T1HQ@2759|Eukaryota
DescriptionCpeS-like protein
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2849Gchil2849Gracilaria chilensis NLEC103_M9 malegenetig00004406_pilon 910846..911421 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2849.t1.start1Gchil2849.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004406_pilon 910846..910848 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2849.t1.CDS1Gchil2849.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 910846..911421 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2849.t1.exon1Gchil2849.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 910846..911421 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2849.t1.stop1Gchil2849.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004406_pilon 911419..911421 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2849.t1Gchil2849.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004406_pilon 910846..911421 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2849.t1 ID=Gchil2849.t1|Name=Gchil2849.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=192bp
MVAQRASRTPFSGVGMTVDDFFERSIGVWRSQRSSHILAFSQFEAITSEI
NIEKIGVDDQRTKDLASMHKVPLDEIAIAIYMSWEGESDWDDDTDGELSG
HTMLAVTKDTDSRGKLLRSSGYAETIPAVGEWRMTDDGVFVLETPYEAAA
AEERIWFANKDVRMRVSQIRTSSGAGVISASMSTEIRRLKL*
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spliced messenger RNA

>Gchil2849.t1 ID=Gchil2849.t1|Name=Gchil2849.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=576bp|location=Sequence derived from alignment at tig00004406_pilon:910846..911421+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGCACAGCGCGCGTCTCGCACTCCATTCTCAGGGGTGGGAATGAC
GGTAGACGACTTTTTTGAGCGCTCGATAGGTGTATGGCGTTCCCAACGAT
CCAGCCATATTCTGGCGTTTTCGCAATTCGAAGCCATCACGAGTGAGATC
AACATCGAGAAAATTGGCGTCGATGACCAAAGAACAAAGGATCTGGCAAG
TATGCACAAAGTGCCGCTCGACGAGATTGCTATAGCGATTTACATGAGTT
GGGAAGGAGAGTCGGACTGGGATGACGATACAGACGGGGAGTTGAGTGGA
CACACTATGCTGGCTGTCACAAAGGACACCGACAGCCGGGGGAAGCTGCT
GCGCAGTAGCGGGTACGCCGAGACCATTCCGGCCGTCGGTGAGTGGCGCA
TGACGGACGATGGAGTGTTTGTGTTGGAAACGCCGTACGAGGCTGCTGCA
GCAGAAGAGCGCATTTGGTTTGCGAACAAGGACGTGCGAATGAGGGTGTC
ACAAATTCGGACGAGCTCCGGTGCTGGAGTGATTAGCGCGTCGATGAGCA
CGGAGATTCGTAGACTGAAATTGTAG
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protein sequence of Gchil2849.t1

>Gchil2849.t1 ID=Gchil2849.t1|Name=Gchil2849.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=192bp
MVAQRASRTPFSGVGMTVDDFFERSIGVWRSQRSSHILAFSQFEAITSEI
NIEKIGVDDQRTKDLASMHKVPLDEIAIAIYMSWEGESDWDDDTDGELSG
HTMLAVTKDTDSRGKLLRSSGYAETIPAVGEWRMTDDGVFVLETPYEAAA
AEERIWFANKDVRMRVSQIRTSSGAGVISASMSTEIRRLKL*
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mRNA from alignment at tig00004406_pilon:910846..911421+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2849.t1 ID=Gchil2849.t1|Name=Gchil2849.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=576bp|location=Sequence derived from alignment at tig00004406_pilon:910846..911421+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTGGCACAGCGCGCGTCTCGCACTCCATTCTCAGGGGTGGGAATGAC
GGTAGACGACTTTTTTGAGCGCTCGATAGGTGTATGGCGTTCCCAACGAT
CCAGCCATATTCTGGCGTTTTCGCAATTCGAAGCCATCACGAGTGAGATC
AACATCGAGAAAATTGGCGTCGATGACCAAAGAACAAAGGATCTGGCAAG
TATGCACAAAGTGCCGCTCGACGAGATTGCTATAGCGATTTACATGAGTT
GGGAAGGAGAGTCGGACTGGGATGACGATACAGACGGGGAGTTGAGTGGA
CACACTATGCTGGCTGTCACAAAGGACACCGACAGCCGGGGGAAGCTGCT
GCGCAGTAGCGGGTACGCCGAGACCATTCCGGCCGTCGGTGAGTGGCGCA
TGACGGACGATGGAGTGTTTGTGTTGGAAACGCCGTACGAGGCTGCTGCA
GCAGAAGAGCGCATTTGGTTTGCGAACAAGGACGTGCGAATGAGGGTGTC
ACAAATTCGGACGAGCTCCGGTGCTGGAGTGATTAGCGCGTCGATGAGCA
CGGAGATTCGTAGACTGAAATTGTAG
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Coding sequence (CDS) from alignment at tig00004406_pilon:910846..911421+

>Gchil2849.t1 ID=Gchil2849.t1|Name=Gchil2849.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=576bp|location=Sequence derived from alignment at tig00004406_pilon:910846..911421+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTGGCACAGCGCGCGTCTCGCACTCCATTCTCAGGGGTGGGAATGAC
GGTAGACGACTTTTTTGAGCGCTCGATAGGTGTATGGCGTTCCCAACGAT
CCAGCCATATTCTGGCGTTTTCGCAATTCGAAGCCATCACGAGTGAGATC
AACATCGAGAAAATTGGCGTCGATGACCAAAGAACAAAGGATCTGGCAAG
TATGCACAAAGTGCCGCTCGACGAGATTGCTATAGCGATTTACATGAGTT
GGGAAGGAGAGTCGGACTGGGATGACGATACAGACGGGGAGTTGAGTGGA
CACACTATGCTGGCTGTCACAAAGGACACCGACAGCCGGGGGAAGCTGCT
GCGCAGTAGCGGGTACGCCGAGACCATTCCGGCCGTCGGTGAGTGGCGCA
TGACGGACGATGGAGTGTTTGTGTTGGAAACGCCGTACGAGGCTGCTGCA
GCAGAAGAGCGCATTTGGTTTGCGAACAAGGACGTGCGAATGAGGGTGTC
ACAAATTCGGACGAGCTCCGGTGCTGGAGTGATTAGCGCGTCGATGAGCA
CGGAGATTCGTAGACTGAAATTGTAG
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