Gchil2847.t2 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2847.t2
Unique NameGchil2847.t2
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length626
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004406_piloncontigtig00004406_pilon:905778..907971 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703465.1
Preferred namePPP1R42
PFAMsDUF1115,LRR_4,LRR_9,PRP3
Max annot lvl2759|Eukaryota
KEGG koko:K12843,ko:K17579
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
GOsGO:0000003,GO:0000375,GO:0000377,GO:0000398,GO:0002177,GO:0003006,GO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007275,GO:0008092,GO:0008150,GO:0008152,GO:0008380,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0010467,GO:0010921,GO:0015630,GO:0015631,GO:0016070,GO:0016071,GO:0019219,GO:0019220,GO:0019222,GO:0022414,GO:0030532,GO:0031323,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034641,GO:0035303,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044030,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044446,GO:0044464,GO:0044877,GO:0045292,GO:0046483,GO:0046540,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0051052,GO:0051171,GO:0051174,GO:0051336,GO:0060255,GO:0061458,GO:0065007,GO:0065009,GO:0070013,GO:0070840,GO:0071704,GO:0080090,GO:0090304,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1990904
Evalue1.49e-63
EggNOG OGsKOG2769@1|root,KOG2769@2759|Eukaryota
DescriptionmRNA splicing, via spliceosome
COG categoryS
BRITEko00000,ko00001,ko00002,ko01009,ko03041,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2847Gchil2847Gracilaria chilensis NLEC103_M9 malegenetig00004406_pilon 905778..907971 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2847.t2Gchil2847.t2Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004406_pilon 905778..907971 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2847.t2.stop1Gchil2847.t2.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004406_pilon 905778..905780 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2847.t2.CDS1Gchil2847.t2.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 905778..907398 -
Gchil2847.t2.CDS2Gchil2847.t2.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 907599..907760 -
Gchil2847.t2.CDS3Gchil2847.t2.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 907877..907971 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2847.t2.exon1Gchil2847.t2.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 905778..907398 -
Gchil2847.t2.exon2Gchil2847.t2.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 907599..907760 -
Gchil2847.t2.exon3Gchil2847.t2.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 907877..907971 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2847.t2.intron1Gchil2847.t2.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004406_pilon 907399..907598 -
Gchil2847.t2.intron2Gchil2847.t2.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004406_pilon 907761..907876 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2847.t2.start1Gchil2847.t2.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004406_pilon 907969..907971 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2847.t2 ID=Gchil2847.t2|Name=Gchil2847.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=626bp
MVITFLKHSEVRSGRLSSSKGLRIVLSCTYKGATTRGLCSVTLRQKPPVS
VSCDTERARECRTCDTVPSSTTLPGKRNEVPERKFRLSANEAPTVLLNPF
VAALRAVNSSRQKRTLELQAADQEERTNVHSENTNRDRKRRKGSRFSTAE
PPFVENRKPISEAFPRAAPSFVSLPISKNVATASANIDLSSIPIAPVSTL
RINRTVQKKRKLDAVLKISENDLLDRDPTRNPYFDNSIKNTISRSRPPRE
IKFVPQGEIAARAERKREAVLIQARREEYRKRLAEGEGELPVLPPLAQDL
RVKDAMVPDCEWWDEPFIGKASGDFATDKDQNNDTSDSLEVREDRITHYI
HHPPPINPDMSKHPPPELPLMLTKKEAKKLRRQRRQEAQKEKQEMIALGL
MPPPPPKIKLSNMRRVLLSEVTADPTKVEQEVRLQMEERKRKHELENDER
KKSKEERRDAAREKLANDQKAGLFAAVYRLGGIHGGQKFKISVNARQLDM
SGVLVLYSAFNVVVVEGGKKALRKFKKLMLRRIDWTESEKSYSGTTKNNP
VNEEQDEGKLSNKGCVLLWEGPIQKTSFEQFQTMSLPQEAECRGMFRKQG
VEHYWNLCAQASPAGNEGVGVRVID*
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spliced messenger RNA

>Gchil2847.t2 ID=Gchil2847.t2|Name=Gchil2847.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1878bp|location=Sequence derived from alignment at tig00004406_pilon:905778..907971- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTAATTACCTTTCTGAAGCATAGTGAAGTTAGAAGTGGGCGACTTTC
ATCATCTAAAGGACTTAGGATTGTACTCAGCTGCACCTACAAAGGCGCGA
CCACACGCGGATTGTGCTCGGTAACATTGCGTCAGAAGCCCCCAGTTTCC
GTCTCATGTGACACAGAACGTGCGCGTGAATGTCGCACATGTGATACCGT
TCCGTCTAGTACTACTTTGCCCGGGAAACGCAACGAAGTCCCCGAAAGAA
AGTTTCGCTTGTCAGCAAATGAGGCCCCGACAGTGTTGCTCAACCCTTTT
GTCGCTGCGTTGCGAGCTGTTAATTCTTCTCGTCAGAAACGAACCCTTGA
GCTACAAGCAGCGGACCAAGAGGAGCGAACCAATGTGCACTCGGAGAATA
CCAATCGCGATAGAAAACGTCGAAAGGGCTCTCGCTTTTCCACGGCCGAA
CCTCCGTTTGTCGAAAACCGCAAGCCAATATCTGAGGCTTTTCCTCGAGC
TGCACCGAGTTTTGTCTCCCTTCCTATTTCTAAAAATGTTGCTACTGCTT
CTGCAAATATTGATCTTTCATCAATACCAATAGCTCCAGTCTCAACCCTA
CGCATAAACAGAACCGTGCAAAAGAAGCGTAAGTTGGATGCTGTTTTGAA
AATATCTGAGAATGATCTGCTTGACCGGGATCCGACCCGAAACCCATATT
TTGACAACTCCATTAAGAATACCATATCCCGATCACGACCTCCACGAGAA
ATCAAGTTTGTACCTCAGGGAGAGATTGCCGCCCGAGCGGAGCGGAAGAG
AGAAGCAGTATTGATTCAAGCTCGGAGAGAAGAATATCGCAAGCGCCTCG
CTGAAGGAGAAGGTGAATTGCCTGTGCTTCCACCTCTAGCGCAGGACTTA
CGCGTAAAAGATGCAATGGTACCCGACTGCGAATGGTGGGACGAACCATT
CATTGGGAAAGCTTCCGGCGATTTTGCAACTGACAAAGATCAGAATAACG
ATACAAGCGATTCATTGGAGGTACGAGAAGATCGCATAACTCACTACATA
CATCACCCACCTCCTATCAATCCAGATATGTCAAAGCATCCGCCACCCGA
ACTTCCTCTCATGCTAACTAAGAAAGAGGCCAAGAAGCTCAGAAGGCAGC
GACGGCAAGAGGCTCAAAAAGAGAAGCAGGAAATGATTGCATTAGGACTC
ATGCCTCCACCACCCCCAAAAATTAAGTTGAGCAATATGAGACGTGTGTT
GTTGTCAGAGGTTACCGCGGATCCAACCAAAGTTGAGCAAGAAGTTCGAC
TGCAAATGGAAGAAAGGAAGCGAAAACACGAACTTGAAAATGACGAAAGG
AAGAAGAGCAAAGAGGAGCGTCGCGATGCGGCTCGTGAAAAGTTGGCAAA
CGACCAGAAAGCAGGATTGTTTGCGGCCGTTTATCGATTAGGTGGCATAC
ATGGGGGTCAGAAGTTTAAAATAAGTGTGAACGCACGACAACTTGACATG
AGTGGAGTTCTTGTTCTATACAGCGCCTTTAATGTTGTCGTTGTTGAAGG
AGGAAAGAAGGCGCTTCGCAAGTTCAAAAAGCTCATGCTAAGGCGCATTG
ATTGGACTGAAAGCGAGAAAAGCTATTCCGGGACAACGAAAAACAATCCC
GTAAATGAAGAGCAAGATGAGGGAAAGCTGTCAAACAAAGGCTGTGTACT
TCTTTGGGAGGGCCCGATACAAAAGACATCTTTTGAACAGTTTCAGACAA
TGTCTTTACCACAGGAAGCTGAATGTCGGGGAATGTTTCGCAAACAAGGC
GTTGAACACTATTGGAACCTATGTGCCCAAGCTAGTCCTGCTGGTAATGA
GGGCGTTGGTGTGAGAGTAATTGATTAA
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protein sequence of Gchil2847.t2

>Gchil2847.t2 ID=Gchil2847.t2|Name=Gchil2847.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=626bp
MVITFLKHSEVRSGRLSSSKGLRIVLSCTYKGATTRGLCSVTLRQKPPVS
VSCDTERARECRTCDTVPSSTTLPGKRNEVPERKFRLSANEAPTVLLNPF
VAALRAVNSSRQKRTLELQAADQEERTNVHSENTNRDRKRRKGSRFSTAE
PPFVENRKPISEAFPRAAPSFVSLPISKNVATASANIDLSSIPIAPVSTL
RINRTVQKKRKLDAVLKISENDLLDRDPTRNPYFDNSIKNTISRSRPPRE
IKFVPQGEIAARAERKREAVLIQARREEYRKRLAEGEGELPVLPPLAQDL
RVKDAMVPDCEWWDEPFIGKASGDFATDKDQNNDTSDSLEVREDRITHYI
HHPPPINPDMSKHPPPELPLMLTKKEAKKLRRQRRQEAQKEKQEMIALGL
MPPPPPKIKLSNMRRVLLSEVTADPTKVEQEVRLQMEERKRKHELENDER
KKSKEERRDAAREKLANDQKAGLFAAVYRLGGIHGGQKFKISVNARQLDM
SGVLVLYSAFNVVVVEGGKKALRKFKKLMLRRIDWTESEKSYSGTTKNNP
VNEEQDEGKLSNKGCVLLWEGPIQKTSFEQFQTMSLPQEAECRGMFRKQG
VEHYWNLCAQASPAGNEGVGVRVID*
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mRNA from alignment at tig00004406_pilon:905778..907971-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2847.t2 ID=Gchil2847.t2|Name=Gchil2847.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2194bp|location=Sequence derived from alignment at tig00004406_pilon:905778..907971- (Gracilaria chilensis NLEC103_M9 male)
ATGGTAATTACCTTTCTGAAGCATAGTGAAGTTAGAAGTGGGCGACTTTC
ATCATCTAAAGGACTTAGGATTGTACTCAGCTGCACCTACAAAGGGTACA
TTATTTTTTATGCGTTTTGCAAAAAAGAAATTGTTCGTTCCAAATCTAAA
GCGGGCGGTCTGCCAGAAAGAGCGCCAACCCCGGACCCGTTTTCTGCTGC
TTAATACCAAGCGCGACCACACGCGGATTGTGCTCGGTAACATTGCGTCA
GAAGCCCCCAGTTTCCGTCTCATGTGACACAGAACGTGCGCGTGAATGTC
GCACATGTGATACCGTTCCGTCTAGTACTACTTTGCCCGGGAAACGCAAC
GAAGTCCCCGAAAGAAAGTTTCGGTAAGTCGGTAGCGAATATCTTGATTT
AAGGCTTTGCTTTTTCTTCCAGCTTTCAACAACGGCAAATACTTATCTAT
GACTGAAACGGCACGCAAATCAACGTCAAGAAGAAAGCGAGGCCGATCTC
GTTTTACCGCTCTTGACGAGGTAACTGGCACAGTTGACACGGTACTGACT
GCATCCGAGCCCAACAAACAAAGCTTGTCAGCAAATGAGGCCCCGACAGT
GTTGCTCAACCCTTTTGTCGCTGCGTTGCGAGCTGTTAATTCTTCTCGTC
AGAAACGAACCCTTGAGCTACAAGCAGCGGACCAAGAGGAGCGAACCAAT
GTGCACTCGGAGAATACCAATCGCGATAGAAAACGTCGAAAGGGCTCTCG
CTTTTCCACGGCCGAACCTCCGTTTGTCGAAAACCGCAAGCCAATATCTG
AGGCTTTTCCTCGAGCTGCACCGAGTTTTGTCTCCCTTCCTATTTCTAAA
AATGTTGCTACTGCTTCTGCAAATATTGATCTTTCATCAATACCAATAGC
TCCAGTCTCAACCCTACGCATAAACAGAACCGTGCAAAAGAAGCGTAAGT
TGGATGCTGTTTTGAAAATATCTGAGAATGATCTGCTTGACCGGGATCCG
ACCCGAAACCCATATTTTGACAACTCCATTAAGAATACCATATCCCGATC
ACGACCTCCACGAGAAATCAAGTTTGTACCTCAGGGAGAGATTGCCGCCC
GAGCGGAGCGGAAGAGAGAAGCAGTATTGATTCAAGCTCGGAGAGAAGAA
TATCGCAAGCGCCTCGCTGAAGGAGAAGGTGAATTGCCTGTGCTTCCACC
TCTAGCGCAGGACTTACGCGTAAAAGATGCAATGGTACCCGACTGCGAAT
GGTGGGACGAACCATTCATTGGGAAAGCTTCCGGCGATTTTGCAACTGAC
AAAGATCAGAATAACGATACAAGCGATTCATTGGAGGTACGAGAAGATCG
CATAACTCACTACATACATCACCCACCTCCTATCAATCCAGATATGTCAA
AGCATCCGCCACCCGAACTTCCTCTCATGCTAACTAAGAAAGAGGCCAAG
AAGCTCAGAAGGCAGCGACGGCAAGAGGCTCAAAAAGAGAAGCAGGAAAT
GATTGCATTAGGACTCATGCCTCCACCACCCCCAAAAATTAAGTTGAGCA
ATATGAGACGTGTGTTGTTGTCAGAGGTTACCGCGGATCCAACCAAAGTT
GAGCAAGAAGTTCGACTGCAAATGGAAGAAAGGAAGCGAAAACACGAACT
TGAAAATGACGAAAGGAAGAAGAGCAAAGAGGAGCGTCGCGATGCGGCTC
GTGAAAAGTTGGCAAACGACCAGAAAGCAGGATTGTTTGCGGCCGTTTAT
CGATTAGGTGGCATACATGGGGGTCAGAAGTTTAAAATAAGTGTGAACGC
ACGACAACTTGACATGAGTGGAGTTCTTGTTCTATACAGCGCCTTTAATG
TTGTCGTTGTTGAAGGAGGAAAGAAGGCGCTTCGCAAGTTCAAAAAGCTC
ATGCTAAGGCGCATTGATTGGACTGAAAGCGAGAAAAGCTATTCCGGGAC
AACGAAAAACAATCCCGTAAATGAAGAGCAAGATGAGGGAAAGCTGTCAA
ACAAAGGCTGTGTACTTCTTTGGGAGGGCCCGATACAAAAGACATCTTTT
GAACAGTTTCAGACAATGTCTTTACCACAGGAAGCTGAATGTCGGGGAAT
GTTTCGCAAACAAGGCGTTGAACACTATTGGAACCTATGTGCCCAAGCTA
GTCCTGCTGGTAATGAGGGCGTTGGTGTGAGAGTAATTGATTAA
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Coding sequence (CDS) from alignment at tig00004406_pilon:905778..907971-

>Gchil2847.t2 ID=Gchil2847.t2|Name=Gchil2847.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1878bp|location=Sequence derived from alignment at tig00004406_pilon:905778..907971- (Gracilaria chilensis NLEC103_M9 male)
ATGGTAATTACCTTTCTGAAGCATAGTGAAGTTAGAAGTGGGCGACTTTC
ATCATCTAAAGGACTTAGGATTGTACTCAGCTGCACCTACAAAGGCGCGA
CCACACGCGGATTGTGCTCGGTAACATTGCGTCAGAAGCCCCCAGTTTCC
GTCTCATGTGACACAGAACGTGCGCGTGAATGTCGCACATGTGATACCGT
TCCGTCTAGTACTACTTTGCCCGGGAAACGCAACGAAGTCCCCGAAAGAA
AGTTTCGCTTGTCAGCAAATGAGGCCCCGACAGTGTTGCTCAACCCTTTT
GTCGCTGCGTTGCGAGCTGTTAATTCTTCTCGTCAGAAACGAACCCTTGA
GCTACAAGCAGCGGACCAAGAGGAGCGAACCAATGTGCACTCGGAGAATA
CCAATCGCGATAGAAAACGTCGAAAGGGCTCTCGCTTTTCCACGGCCGAA
CCTCCGTTTGTCGAAAACCGCAAGCCAATATCTGAGGCTTTTCCTCGAGC
TGCACCGAGTTTTGTCTCCCTTCCTATTTCTAAAAATGTTGCTACTGCTT
CTGCAAATATTGATCTTTCATCAATACCAATAGCTCCAGTCTCAACCCTA
CGCATAAACAGAACCGTGCAAAAGAAGCGTAAGTTGGATGCTGTTTTGAA
AATATCTGAGAATGATCTGCTTGACCGGGATCCGACCCGAAACCCATATT
TTGACAACTCCATTAAGAATACCATATCCCGATCACGACCTCCACGAGAA
ATCAAGTTTGTACCTCAGGGAGAGATTGCCGCCCGAGCGGAGCGGAAGAG
AGAAGCAGTATTGATTCAAGCTCGGAGAGAAGAATATCGCAAGCGCCTCG
CTGAAGGAGAAGGTGAATTGCCTGTGCTTCCACCTCTAGCGCAGGACTTA
CGCGTAAAAGATGCAATGGTACCCGACTGCGAATGGTGGGACGAACCATT
CATTGGGAAAGCTTCCGGCGATTTTGCAACTGACAAAGATCAGAATAACG
ATACAAGCGATTCATTGGAGGTACGAGAAGATCGCATAACTCACTACATA
CATCACCCACCTCCTATCAATCCAGATATGTCAAAGCATCCGCCACCCGA
ACTTCCTCTCATGCTAACTAAGAAAGAGGCCAAGAAGCTCAGAAGGCAGC
GACGGCAAGAGGCTCAAAAAGAGAAGCAGGAAATGATTGCATTAGGACTC
ATGCCTCCACCACCCCCAAAAATTAAGTTGAGCAATATGAGACGTGTGTT
GTTGTCAGAGGTTACCGCGGATCCAACCAAAGTTGAGCAAGAAGTTCGAC
TGCAAATGGAAGAAAGGAAGCGAAAACACGAACTTGAAAATGACGAAAGG
AAGAAGAGCAAAGAGGAGCGTCGCGATGCGGCTCGTGAAAAGTTGGCAAA
CGACCAGAAAGCAGGATTGTTTGCGGCCGTTTATCGATTAGGTGGCATAC
ATGGGGGTCAGAAGTTTAAAATAAGTGTGAACGCACGACAACTTGACATG
AGTGGAGTTCTTGTTCTATACAGCGCCTTTAATGTTGTCGTTGTTGAAGG
AGGAAAGAAGGCGCTTCGCAAGTTCAAAAAGCTCATGCTAAGGCGCATTG
ATTGGACTGAAAGCGAGAAAAGCTATTCCGGGACAACGAAAAACAATCCC
GTAAATGAAGAGCAAGATGAGGGAAAGCTGTCAAACAAAGGCTGTGTACT
TCTTTGGGAGGGCCCGATACAAAAGACATCTTTTGAACAGTTTCAGACAA
TGTCTTTACCACAGGAAGCTGAATGTCGGGGAATGTTTCGCAAACAAGGC
GTTGAACACTATTGGAACCTATGTGCCCAAGCTAGTCCTGCTGGTAATGA
GGGCGTTGGTGTGAGAGTAATTGATTAA
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