Gchil2845.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2845.t1
Unique NameGchil2845.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length328
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004406_piloncontigtig00004406_pilon:888495..889478 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog400682.PAC_15698815
PFAMsRVT_1,rve,zf-H2C2
Max annot lvl33208|Metazoa
Evalue2.52e-06
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3BA5H@33208|Metazoa
DescriptionK02A2.6-like
COG categoryOU
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2845Gchil2845Gracilaria chilensis NLEC103_M9 malegenetig00004406_pilon 888495..889478 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2845.t1.stop1Gchil2845.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004406_pilon 888495..888497 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2845.t1.CDS1Gchil2845.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 888495..889478 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2845.t1.exon1Gchil2845.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 888495..889478 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2845.t1.start1Gchil2845.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004406_pilon 889476..889478 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2845.t1Gchil2845.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004406_pilon 888495..889478 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2845.t1 ID=Gchil2845.t1|Name=Gchil2845.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=328bp
MDKGAGLNLVHFKLLSLGWEDFVQSSKTLRTTDASRTPIDIKGKVPLYIQ
LGQFKVRAWFLVCPNLSVKAILGTSFIDQDIKAIYPGLWKVAFYHAPSIS
ITGSTPGPGANHNRAVVSENTKSNRIRLSKTITIPPLTQLAVSVHSQFSG
LVTIQNHPKTDLKHFTLMASGVMDIRFIRPFLVTISNFRDKPVLLLQGKV
IDITLNAFVAIMEAQIYNFATPTPNEHVESWEGRVAIGAECESYRPQVLD
LLKEYQAMWSGRLGKIRANAHRIDLQDDAKPQFQHPYCTGLKGREIVADQ
ADKMRKAQVIEPVPPKQSEWTSPLVLV*
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spliced messenger RNA

>Gchil2845.t1 ID=Gchil2845.t1|Name=Gchil2845.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=984bp|location=Sequence derived from alignment at tig00004406_pilon:888495..889478- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAAAGGCGCTGGTCTCAACTTGGTCCATTTTAAGCTGCTCTCACT
GGGTTGGGAAGATTTCGTTCAGTCAAGTAAGACCCTAAGGACTACCGATG
CGTCTCGTACACCAATTGACATCAAAGGGAAAGTACCACTTTACATACAA
TTAGGACAATTCAAAGTCCGCGCGTGGTTCCTTGTATGTCCTAACTTAAG
CGTTAAAGCAATCCTAGGGACCTCCTTTATCGACCAAGACATTAAGGCCA
TTTATCCAGGTCTTTGGAAAGTCGCATTTTACCACGCACCTTCCATCTCC
ATAACTGGTTCAACCCCAGGGCCAGGAGCTAACCACAATCGGGCGGTTGT
CTCCGAAAATACGAAGTCCAATAGGATTCGCCTGTCAAAGACCATAACTA
TACCGCCGTTGACCCAACTCGCTGTATCGGTCCATTCCCAGTTCTCAGGT
CTCGTAACGATTCAGAACCACCCGAAAACGGATCTGAAGCACTTTACGTT
GATGGCCAGTGGCGTAATGGACATCCGCTTCATCAGGCCGTTCTTGGTCA
CAATCAGCAACTTCAGAGATAAACCCGTACTGTTACTTCAAGGTAAAGTG
ATTGACATCACTCTAAATGCGTTTGTGGCCATTATGGAGGCCCAAATATA
TAACTTTGCAACGCCAACTCCCAACGAGCACGTCGAATCTTGGGAGGGGA
GAGTCGCTATCGGCGCAGAATGCGAATCCTACAGACCCCAGGTACTTGAT
CTCCTCAAAGAATACCAGGCCATGTGGTCCGGTAGATTGGGAAAAATTAG
AGCCAATGCACACCGCATTGACCTTCAGGATGATGCTAAACCACAGTTCC
AGCACCCATACTGTACCGGCCTCAAAGGTAGGGAAATTGTCGCCGATCAG
GCGGACAAGATGCGCAAAGCTCAAGTCATAGAGCCGGTGCCTCCGAAGCA
ATCCGAATGGACAAGTCCCCTCGTCCTTGTGTAG
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protein sequence of Gchil2845.t1

>Gchil2845.t1 ID=Gchil2845.t1|Name=Gchil2845.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=328bp
MDKGAGLNLVHFKLLSLGWEDFVQSSKTLRTTDASRTPIDIKGKVPLYIQ
LGQFKVRAWFLVCPNLSVKAILGTSFIDQDIKAIYPGLWKVAFYHAPSIS
ITGSTPGPGANHNRAVVSENTKSNRIRLSKTITIPPLTQLAVSVHSQFSG
LVTIQNHPKTDLKHFTLMASGVMDIRFIRPFLVTISNFRDKPVLLLQGKV
IDITLNAFVAIMEAQIYNFATPTPNEHVESWEGRVAIGAECESYRPQVLD
LLKEYQAMWSGRLGKIRANAHRIDLQDDAKPQFQHPYCTGLKGREIVADQ
ADKMRKAQVIEPVPPKQSEWTSPLVLV*
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mRNA from alignment at tig00004406_pilon:888495..889478-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2845.t1 ID=Gchil2845.t1|Name=Gchil2845.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=984bp|location=Sequence derived from alignment at tig00004406_pilon:888495..889478- (Gracilaria chilensis NLEC103_M9 male)
ATGGACAAAGGCGCTGGTCTCAACTTGGTCCATTTTAAGCTGCTCTCACT
GGGTTGGGAAGATTTCGTTCAGTCAAGTAAGACCCTAAGGACTACCGATG
CGTCTCGTACACCAATTGACATCAAAGGGAAAGTACCACTTTACATACAA
TTAGGACAATTCAAAGTCCGCGCGTGGTTCCTTGTATGTCCTAACTTAAG
CGTTAAAGCAATCCTAGGGACCTCCTTTATCGACCAAGACATTAAGGCCA
TTTATCCAGGTCTTTGGAAAGTCGCATTTTACCACGCACCTTCCATCTCC
ATAACTGGTTCAACCCCAGGGCCAGGAGCTAACCACAATCGGGCGGTTGT
CTCCGAAAATACGAAGTCCAATAGGATTCGCCTGTCAAAGACCATAACTA
TACCGCCGTTGACCCAACTCGCTGTATCGGTCCATTCCCAGTTCTCAGGT
CTCGTAACGATTCAGAACCACCCGAAAACGGATCTGAAGCACTTTACGTT
GATGGCCAGTGGCGTAATGGACATCCGCTTCATCAGGCCGTTCTTGGTCA
CAATCAGCAACTTCAGAGATAAACCCGTACTGTTACTTCAAGGTAAAGTG
ATTGACATCACTCTAAATGCGTTTGTGGCCATTATGGAGGCCCAAATATA
TAACTTTGCAACGCCAACTCCCAACGAGCACGTCGAATCTTGGGAGGGGA
GAGTCGCTATCGGCGCAGAATGCGAATCCTACAGACCCCAGGTACTTGAT
CTCCTCAAAGAATACCAGGCCATGTGGTCCGGTAGATTGGGAAAAATTAG
AGCCAATGCACACCGCATTGACCTTCAGGATGATGCTAAACCACAGTTCC
AGCACCCATACTGTACCGGCCTCAAAGGTAGGGAAATTGTCGCCGATCAG
GCGGACAAGATGCGCAAAGCTCAAGTCATAGAGCCGGTGCCTCCGAAGCA
ATCCGAATGGACAAGTCCCCTCGTCCTTGTGTAG
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Coding sequence (CDS) from alignment at tig00004406_pilon:888495..889478-

>Gchil2845.t1 ID=Gchil2845.t1|Name=Gchil2845.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=984bp|location=Sequence derived from alignment at tig00004406_pilon:888495..889478- (Gracilaria chilensis NLEC103_M9 male)
ATGGACAAAGGCGCTGGTCTCAACTTGGTCCATTTTAAGCTGCTCTCACT
GGGTTGGGAAGATTTCGTTCAGTCAAGTAAGACCCTAAGGACTACCGATG
CGTCTCGTACACCAATTGACATCAAAGGGAAAGTACCACTTTACATACAA
TTAGGACAATTCAAAGTCCGCGCGTGGTTCCTTGTATGTCCTAACTTAAG
CGTTAAAGCAATCCTAGGGACCTCCTTTATCGACCAAGACATTAAGGCCA
TTTATCCAGGTCTTTGGAAAGTCGCATTTTACCACGCACCTTCCATCTCC
ATAACTGGTTCAACCCCAGGGCCAGGAGCTAACCACAATCGGGCGGTTGT
CTCCGAAAATACGAAGTCCAATAGGATTCGCCTGTCAAAGACCATAACTA
TACCGCCGTTGACCCAACTCGCTGTATCGGTCCATTCCCAGTTCTCAGGT
CTCGTAACGATTCAGAACCACCCGAAAACGGATCTGAAGCACTTTACGTT
GATGGCCAGTGGCGTAATGGACATCCGCTTCATCAGGCCGTTCTTGGTCA
CAATCAGCAACTTCAGAGATAAACCCGTACTGTTACTTCAAGGTAAAGTG
ATTGACATCACTCTAAATGCGTTTGTGGCCATTATGGAGGCCCAAATATA
TAACTTTGCAACGCCAACTCCCAACGAGCACGTCGAATCTTGGGAGGGGA
GAGTCGCTATCGGCGCAGAATGCGAATCCTACAGACCCCAGGTACTTGAT
CTCCTCAAAGAATACCAGGCCATGTGGTCCGGTAGATTGGGAAAAATTAG
AGCCAATGCACACCGCATTGACCTTCAGGATGATGCTAAACCACAGTTCC
AGCACCCATACTGTACCGGCCTCAAAGGTAGGGAAATTGTCGCCGATCAG
GCGGACAAGATGCGCAAAGCTCAAGTCATAGAGCCGGTGCCTCCGAAGCA
ATCCGAATGGACAAGTCCCCTCGTCCTTGTGTAG
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