Gchil2833.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2833.t1
Unique NameGchil2833.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length247
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004406_piloncontigtig00004406_pilon:819594..820334 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3983.cassava4.1_015648m
PFAMsPro_isomerase
Max annot lvl35493|Streptophyta
GOsGO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005770,GO:0005771,GO:0005783,GO:0005794,GO:0005795,GO:0005802,GO:0005829,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0012505,GO:0016020,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0031410,GO:0031982,GO:0031984,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:0097708,GO:0098791,GO:0140096,GO:1901564
Evalue1.17e-31
EggNOG OGsCOG0652@1|root,KOG0865@2759|Eukaryota,37KND@33090|Viridiplantae,3GAD1@35493|Streptophyta,4JIPN@91835|fabids
DescriptionPPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2833Gchil2833Gracilaria chilensis NLEC103_M9 malegenetig00004406_pilon 819594..820334 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2833.t1.stop1Gchil2833.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004406_pilon 819594..819596 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2833.t1.CDS1Gchil2833.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 819594..820334 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2833.t1.exon1Gchil2833.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 819594..820334 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2833.t1.start1Gchil2833.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004406_pilon 820332..820334 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2833.t1Gchil2833.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004406_pilon 819594..820334 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2833.t1 ID=Gchil2833.t1|Name=Gchil2833.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=247bp
MVAFFITAPSFRIVRASRPSSQPIRIGPQARDVSYCSRFSRRALLLTTLS
TALLHGAPAATCEPQQADIDPLTSEPPATHRVYVDFELSKERTARVVIAL
YGTVVPQTVHNFLSLVDGHEYDGTNVYRIVPGLTVQLGDVLRNKGKSGQA
ATPSGSLPAENFRISHSIPGIVSMVVKGGMVDSRFFITTRRGDSRYLDGK
YVAFGRVVEGLPVLFQMEALHADGGAFVRKPVSVRVVHCARVEPQQ*
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spliced messenger RNA

>Gchil2833.t1 ID=Gchil2833.t1|Name=Gchil2833.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=741bp|location=Sequence derived from alignment at tig00004406_pilon:819594..820334- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGCCTTCTTCATCACCGCCCCCTCATTCCGAATCGTGCGTGCAAG
CCGCCCCTCTTCGCAGCCAATCCGCATTGGTCCCCAAGCCAGAGATGTTT
CTTATTGTTCCCGCTTCTCGCGACGCGCGCTGCTGCTCACCACGCTGTCA
ACTGCGCTGCTTCACGGCGCGCCCGCCGCCACATGCGAGCCTCAACAAGC
TGACATCGACCCCCTGACCAGCGAGCCGCCTGCGACGCACCGGGTGTACG
TGGACTTTGAGCTCTCGAAGGAGCGTACTGCGCGTGTTGTAATCGCTCTG
TACGGCACTGTGGTTCCGCAAACCGTGCACAACTTTCTCAGCTTAGTGGA
CGGGCATGAGTATGACGGCACCAATGTGTATCGTATCGTGCCTGGCTTGA
CAGTTCAGCTCGGCGATGTGCTGCGCAACAAGGGCAAGTCAGGACAAGCA
GCGACGCCATCCGGATCGCTGCCAGCCGAGAATTTCCGCATTTCGCACTC
AATACCGGGCATCGTGTCCATGGTGGTCAAGGGCGGCATGGTGGATAGTC
GCTTCTTCATCACCACCCGACGCGGCGACAGTCGCTATCTGGACGGAAAG
TACGTCGCATTCGGACGCGTTGTAGAAGGGCTGCCGGTGCTCTTTCAGAT
GGAAGCGCTTCACGCTGACGGCGGCGCCTTTGTCAGGAAGCCTGTTTCGG
TTCGCGTGGTGCATTGCGCGCGCGTCGAGCCGCAACAATGA
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protein sequence of Gchil2833.t1

>Gchil2833.t1 ID=Gchil2833.t1|Name=Gchil2833.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=247bp
MVAFFITAPSFRIVRASRPSSQPIRIGPQARDVSYCSRFSRRALLLTTLS
TALLHGAPAATCEPQQADIDPLTSEPPATHRVYVDFELSKERTARVVIAL
YGTVVPQTVHNFLSLVDGHEYDGTNVYRIVPGLTVQLGDVLRNKGKSGQA
ATPSGSLPAENFRISHSIPGIVSMVVKGGMVDSRFFITTRRGDSRYLDGK
YVAFGRVVEGLPVLFQMEALHADGGAFVRKPVSVRVVHCARVEPQQ*
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mRNA from alignment at tig00004406_pilon:819594..820334-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2833.t1 ID=Gchil2833.t1|Name=Gchil2833.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=741bp|location=Sequence derived from alignment at tig00004406_pilon:819594..820334- (Gracilaria chilensis NLEC103_M9 male)
ATGGTCGCCTTCTTCATCACCGCCCCCTCATTCCGAATCGTGCGTGCAAG
CCGCCCCTCTTCGCAGCCAATCCGCATTGGTCCCCAAGCCAGAGATGTTT
CTTATTGTTCCCGCTTCTCGCGACGCGCGCTGCTGCTCACCACGCTGTCA
ACTGCGCTGCTTCACGGCGCGCCCGCCGCCACATGCGAGCCTCAACAAGC
TGACATCGACCCCCTGACCAGCGAGCCGCCTGCGACGCACCGGGTGTACG
TGGACTTTGAGCTCTCGAAGGAGCGTACTGCGCGTGTTGTAATCGCTCTG
TACGGCACTGTGGTTCCGCAAACCGTGCACAACTTTCTCAGCTTAGTGGA
CGGGCATGAGTATGACGGCACCAATGTGTATCGTATCGTGCCTGGCTTGA
CAGTTCAGCTCGGCGATGTGCTGCGCAACAAGGGCAAGTCAGGACAAGCA
GCGACGCCATCCGGATCGCTGCCAGCCGAGAATTTCCGCATTTCGCACTC
AATACCGGGCATCGTGTCCATGGTGGTCAAGGGCGGCATGGTGGATAGTC
GCTTCTTCATCACCACCCGACGCGGCGACAGTCGCTATCTGGACGGAAAG
TACGTCGCATTCGGACGCGTTGTAGAAGGGCTGCCGGTGCTCTTTCAGAT
GGAAGCGCTTCACGCTGACGGCGGCGCCTTTGTCAGGAAGCCTGTTTCGG
TTCGCGTGGTGCATTGCGCGCGCGTCGAGCCGCAACAATGA
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Coding sequence (CDS) from alignment at tig00004406_pilon:819594..820334-

>Gchil2833.t1 ID=Gchil2833.t1|Name=Gchil2833.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=741bp|location=Sequence derived from alignment at tig00004406_pilon:819594..820334- (Gracilaria chilensis NLEC103_M9 male)
ATGGTCGCCTTCTTCATCACCGCCCCCTCATTCCGAATCGTGCGTGCAAG
CCGCCCCTCTTCGCAGCCAATCCGCATTGGTCCCCAAGCCAGAGATGTTT
CTTATTGTTCCCGCTTCTCGCGACGCGCGCTGCTGCTCACCACGCTGTCA
ACTGCGCTGCTTCACGGCGCGCCCGCCGCCACATGCGAGCCTCAACAAGC
TGACATCGACCCCCTGACCAGCGAGCCGCCTGCGACGCACCGGGTGTACG
TGGACTTTGAGCTCTCGAAGGAGCGTACTGCGCGTGTTGTAATCGCTCTG
TACGGCACTGTGGTTCCGCAAACCGTGCACAACTTTCTCAGCTTAGTGGA
CGGGCATGAGTATGACGGCACCAATGTGTATCGTATCGTGCCTGGCTTGA
CAGTTCAGCTCGGCGATGTGCTGCGCAACAAGGGCAAGTCAGGACAAGCA
GCGACGCCATCCGGATCGCTGCCAGCCGAGAATTTCCGCATTTCGCACTC
AATACCGGGCATCGTGTCCATGGTGGTCAAGGGCGGCATGGTGGATAGTC
GCTTCTTCATCACCACCCGACGCGGCGACAGTCGCTATCTGGACGGAAAG
TACGTCGCATTCGGACGCGTTGTAGAAGGGCTGCCGGTGCTCTTTCAGAT
GGAAGCGCTTCACGCTGACGGCGGCGCCTTTGTCAGGAAGCCTGTTTCGG
TTCGCGTGGTGCATTGCGCGCGCGTCGAGCCGCAACAATGA
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