Gchil2828.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2828.t1
Unique Name	Gchil2828.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	659

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004406_pilon	contig	tig00004406_pilon:728899..730875 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704496.1
PFAMs	FBPase,Pyrophosphatase
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00017
KEGG ko	ko:K01507,ko:K03841
KEGG Reaction	R00762,R04780
KEGG Pathway	ko00010,ko00030,ko00051,ko00190,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko04152,ko04910,map00010,map00030,map00051,map00190,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map04152,map04910
KEGG Module	M00003,M00165,M00167,M00344
GOs	GO:0003674,GO:0003824,GO:0004427,GO:0016462,GO:0016787,GO:0016817,GO:0016818
Evalue	2.61e-276
EggNOG OGs	COG0158@1\|root,COG0221@1\|root,KOG1458@2759\|Eukaryota,KOG1626@2759\|Eukaryota
EC	3.1.3.11,3.6.1.1
Description	inorganic diphosphatase activity
COG category	C
BRITE	ko00000,ko00001,ko00002,ko01000,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2828	Gchil2828	Gracilaria chilensis NLEC103_M9 male	gene	tig00004406_pilon 728899..730875 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2828.t1.start1	Gchil2828.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004406_pilon 728899..728901 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2828.t1.CDS1	Gchil2828.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004406_pilon 728899..730875 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2828.t1.exon1	Gchil2828.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004406_pilon 728899..730875 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2828.t1.stop1	Gchil2828.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004406_pilon 730873..730875 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2828.t1	Gchil2828.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004406_pilon 728899..730875 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004406_pilon:728899..730875+
coding sequence from alignment at tig00004406_pilon:728899..730875+

mRNA sequence

>Gchil2828.t1 ID=Gchil2828.t1|Name=Gchil2828.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=659bp
MTHSAEAEPQPVVPDTAHSVDQYSLVRVEDHTAAHNPDFKYFFQKDGHGV
INALHDIPLYADKEAGVLNFICEIPRWTNAKLELHTKTALAPIVQDTKKG
KKRFVHNVYPYKGYIWNYGCFPQTWEDPTQVHMETGALGDGDPLDVCEIG
GKACRIGEVMQVKLLGVLGMIDEGEMDWKVIVVNVHDPIAKDLNDVDDLY
RIFPGLLHATFSWFRTYKIPDGKALNLFAFREQVQSAHYAKEVIDECHQS
WNKLITGVLVHKNINCVSTTLKHSVKYTPPEKARQVVDDAIKEMEAKAES
APENSFGRSNSWLDMTVIPPPEFDDGAKSATGVKPMMTIKRFCTELQRKF
PHGSNDLSLLITELGVAFKCVRAQLCDAPNANFSALATFANSQIHASLAS
SGLCCLIFSSISNQPLALESGTDVGNYIVVYNPLCGVPGASLGSIFSVYY
RKSAPGKEGDTADLLQRPGFEQVAAGYCMYGSSTYLTFSMGYGVHIFTLD
SVSGHFVLSKQHVHTPATGPLYSVDTSVLPNVVDGVAKFVAELESEGSGK
KFRHLNNLVANFHNVLTKGGILMLPGPQKKDLAKFLSEAAPLAFVARQAG
GRGSVGKRTLLELSAWSLEMSVPLFVGSVSEVDRLEELVLGHSIEEKNKV
DPSKNLRI*

spliced messenger RNA

>Gchil2828.t1 ID=Gchil2828.t1|Name=Gchil2828.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1977bp|location=Sequence derived from alignment at tig00004406_pilon:728899..730875+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCACTCCGCTGAGGCCGAGCCGCAGCCCGTCGTGCCAGACACCGC
CCACAGCGTCGATCAGTACAGCCTTGTGCGCGTCGAGGACCACACTGCCG
CACACAACCCCGACTTCAAGTACTTCTTCCAAAAGGACGGCCATGGTGTC
ATCAACGCCTTGCATGACATCCCCCTCTACGCTGACAAGGAAGCCGGCGT
GCTAAACTTCATCTGCGAGATTCCACGCTGGACCAACGCAAAGCTCGAGT
TGCACACCAAAACCGCACTCGCCCCCATCGTACAGGACACCAAGAAGGGT
AAGAAGCGATTCGTCCACAATGTCTACCCGTACAAGGGCTACATCTGGAA
CTATGGCTGCTTCCCGCAGACATGGGAGGACCCCACACAGGTCCACATGG
AAACCGGTGCGCTTGGCGACGGCGATCCTTTGGATGTGTGCGAGATTGGC
GGAAAGGCCTGTCGCATTGGAGAGGTCATGCAGGTCAAGCTTCTGGGCGT
GCTTGGCATGATTGATGAGGGCGAAATGGACTGGAAGGTCATTGTTGTCA
ACGTCCACGATCCTATTGCAAAAGACCTAAACGACGTTGATGACTTGTAT
CGCATCTTCCCTGGCCTTTTGCATGCCACCTTCTCCTGGTTCAGAACTTA
TAAAATCCCAGACGGGAAGGCCCTCAATCTGTTTGCCTTCCGCGAGCAGG
TGCAAAGCGCCCATTACGCAAAGGAAGTCATTGACGAGTGTCACCAAAGT
TGGAACAAGCTCATCACGGGCGTCTTGGTTCACAAGAACATCAATTGCGT
CAGCACCACCCTCAAGCACTCTGTCAAGTACACCCCGCCGGAGAAGGCGC
GCCAGGTTGTCGACGACGCCATCAAGGAAATGGAGGCCAAGGCCGAATCC
GCACCGGAAAACTCCTTTGGTCGTTCCAACTCGTGGCTGGATATGACTGT
CATTCCACCCCCGGAGTTCGACGACGGTGCGAAGAGCGCCACCGGTGTCA
AGCCTATGATGACCATCAAGAGGTTCTGCACTGAGCTGCAACGCAAGTTC
CCGCATGGGTCCAACGACCTCAGCTTGCTTATTACTGAGCTTGGCGTCGC
TTTCAAGTGCGTCAGGGCGCAGCTTTGTGATGCCCCGAATGCCAACTTTT
CGGCGTTGGCTACGTTTGCCAATTCGCAGATCCACGCGTCGCTTGCGTCT
TCTGGGCTGTGTTGTCTAATCTTCAGTTCCATCTCCAACCAGCCCCTGGC
GTTGGAGTCTGGCACTGATGTGGGCAACTACATTGTTGTGTATAACCCGT
TGTGTGGCGTTCCTGGCGCGTCGCTTGGCTCCATTTTCTCTGTATATTAC
CGAAAGTCGGCGCCGGGCAAAGAAGGCGACACTGCAGATCTGTTGCAGCG
GCCTGGCTTTGAACAGGTGGCTGCTGGCTACTGTATGTATGGATCTTCGA
CGTACCTTACCTTCAGTATGGGGTACGGAGTTCATATCTTTACGCTGGAT
TCTGTGTCTGGGCATTTTGTGCTTTCGAAGCAGCACGTGCATACGCCGGC
TACTGGCCCGCTGTACTCGGTCGACACGTCTGTGCTGCCAAATGTTGTGG
ATGGCGTTGCCAAGTTTGTGGCAGAGCTGGAGAGCGAGGGCAGTGGCAAG
AAGTTCAGACATTTGAATAATCTTGTCGCCAACTTCCACAATGTGCTCAC
GAAGGGTGGCATTCTCATGCTGCCTGGGCCGCAGAAGAAGGACTTGGCGA
AATTCCTGTCTGAGGCGGCGCCGCTGGCGTTTGTCGCGCGTCAAGCGGGG
GGAAGAGGGAGCGTGGGGAAGAGAACGCTCTTGGAGCTGTCGGCGTGGAG
CTTGGAAATGAGCGTGCCGCTGTTTGTGGGATCTGTTTCCGAGGTGGATC
GCTTGGAGGAACTTGTGCTTGGTCACTCTATTGAGGAGAAGAATAAGGTT
GACCCGAGCAAGAACCTTAGAATTTGA

protein sequence of Gchil2828.t1

>Gchil2828.t1 ID=Gchil2828.t1|Name=Gchil2828.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=659bp
MTHSAEAEPQPVVPDTAHSVDQYSLVRVEDHTAAHNPDFKYFFQKDGHGV
INALHDIPLYADKEAGVLNFICEIPRWTNAKLELHTKTALAPIVQDTKKG
KKRFVHNVYPYKGYIWNYGCFPQTWEDPTQVHMETGALGDGDPLDVCEIG
GKACRIGEVMQVKLLGVLGMIDEGEMDWKVIVVNVHDPIAKDLNDVDDLY
RIFPGLLHATFSWFRTYKIPDGKALNLFAFREQVQSAHYAKEVIDECHQS
WNKLITGVLVHKNINCVSTTLKHSVKYTPPEKARQVVDDAIKEMEAKAES
APENSFGRSNSWLDMTVIPPPEFDDGAKSATGVKPMMTIKRFCTELQRKF
PHGSNDLSLLITELGVAFKCVRAQLCDAPNANFSALATFANSQIHASLAS
SGLCCLIFSSISNQPLALESGTDVGNYIVVYNPLCGVPGASLGSIFSVYY
RKSAPGKEGDTADLLQRPGFEQVAAGYCMYGSSTYLTFSMGYGVHIFTLD
SVSGHFVLSKQHVHTPATGPLYSVDTSVLPNVVDGVAKFVAELESEGSGK
KFRHLNNLVANFHNVLTKGGILMLPGPQKKDLAKFLSEAAPLAFVARQAG
GRGSVGKRTLLELSAWSLEMSVPLFVGSVSEVDRLEELVLGHSIEEKNKV
DPSKNLRI*

mRNA from alignment at tig00004406_pilon:728899..730875+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2828.t1 ID=Gchil2828.t1|Name=Gchil2828.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1977bp|location=Sequence derived from alignment at tig00004406_pilon:728899..730875+ (Gracilaria chilensis NLEC103_M9 male)
ATGACGCACTCCGCTGAGGCCGAGCCGCAGCCCGTCGTGCCAGACACCGC
CCACAGCGTCGATCAGTACAGCCTTGTGCGCGTCGAGGACCACACTGCCG
CACACAACCCCGACTTCAAGTACTTCTTCCAAAAGGACGGCCATGGTGTC
ATCAACGCCTTGCATGACATCCCCCTCTACGCTGACAAGGAAGCCGGCGT
GCTAAACTTCATCTGCGAGATTCCACGCTGGACCAACGCAAAGCTCGAGT
TGCACACCAAAACCGCACTCGCCCCCATCGTACAGGACACCAAGAAGGGT
AAGAAGCGATTCGTCCACAATGTCTACCCGTACAAGGGCTACATCTGGAA
CTATGGCTGCTTCCCGCAGACATGGGAGGACCCCACACAGGTCCACATGG
AAACCGGTGCGCTTGGCGACGGCGATCCTTTGGATGTGTGCGAGATTGGC
GGAAAGGCCTGTCGCATTGGAGAGGTCATGCAGGTCAAGCTTCTGGGCGT
GCTTGGCATGATTGATGAGGGCGAAATGGACTGGAAGGTCATTGTTGTCA
ACGTCCACGATCCTATTGCAAAAGACCTAAACGACGTTGATGACTTGTAT
CGCATCTTCCCTGGCCTTTTGCATGCCACCTTCTCCTGGTTCAGAACTTA
TAAAATCCCAGACGGGAAGGCCCTCAATCTGTTTGCCTTCCGCGAGCAGG
TGCAAAGCGCCCATTACGCAAAGGAAGTCATTGACGAGTGTCACCAAAGT
TGGAACAAGCTCATCACGGGCGTCTTGGTTCACAAGAACATCAATTGCGT
CAGCACCACCCTCAAGCACTCTGTCAAGTACACCCCGCCGGAGAAGGCGC
GCCAGGTTGTCGACGACGCCATCAAGGAAATGGAGGCCAAGGCCGAATCC
GCACCGGAAAACTCCTTTGGTCGTTCCAACTCGTGGCTGGATATGACTGT
CATTCCACCCCCGGAGTTCGACGACGGTGCGAAGAGCGCCACCGGTGTCA
AGCCTATGATGACCATCAAGAGGTTCTGCACTGAGCTGCAACGCAAGTTC
CCGCATGGGTCCAACGACCTCAGCTTGCTTATTACTGAGCTTGGCGTCGC
TTTCAAGTGCGTCAGGGCGCAGCTTTGTGATGCCCCGAATGCCAACTTTT
CGGCGTTGGCTACGTTTGCCAATTCGCAGATCCACGCGTCGCTTGCGTCT
TCTGGGCTGTGTTGTCTAATCTTCAGTTCCATCTCCAACCAGCCCCTGGC
GTTGGAGTCTGGCACTGATGTGGGCAACTACATTGTTGTGTATAACCCGT
TGTGTGGCGTTCCTGGCGCGTCGCTTGGCTCCATTTTCTCTGTATATTAC
CGAAAGTCGGCGCCGGGCAAAGAAGGCGACACTGCAGATCTGTTGCAGCG
GCCTGGCTTTGAACAGGTGGCTGCTGGCTACTGTATGTATGGATCTTCGA
CGTACCTTACCTTCAGTATGGGGTACGGAGTTCATATCTTTACGCTGGAT
TCTGTGTCTGGGCATTTTGTGCTTTCGAAGCAGCACGTGCATACGCCGGC
TACTGGCCCGCTGTACTCGGTCGACACGTCTGTGCTGCCAAATGTTGTGG
ATGGCGTTGCCAAGTTTGTGGCAGAGCTGGAGAGCGAGGGCAGTGGCAAG
AAGTTCAGACATTTGAATAATCTTGTCGCCAACTTCCACAATGTGCTCAC
GAAGGGTGGCATTCTCATGCTGCCTGGGCCGCAGAAGAAGGACTTGGCGA
AATTCCTGTCTGAGGCGGCGCCGCTGGCGTTTGTCGCGCGTCAAGCGGGG
GGAAGAGGGAGCGTGGGGAAGAGAACGCTCTTGGAGCTGTCGGCGTGGAG
CTTGGAAATGAGCGTGCCGCTGTTTGTGGGATCTGTTTCCGAGGTGGATC
GCTTGGAGGAACTTGTGCTTGGTCACTCTATTGAGGAGAAGAATAAGGTT
GACCCGAGCAAGAACCTTAGAATTTGA

Coding sequence (CDS) from alignment at tig00004406_pilon:728899..730875+

>Gchil2828.t1 ID=Gchil2828.t1|Name=Gchil2828.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1977bp|location=Sequence derived from alignment at tig00004406_pilon:728899..730875+ (Gracilaria chilensis NLEC103_M9 male)
ATGACGCACTCCGCTGAGGCCGAGCCGCAGCCCGTCGTGCCAGACACCGC
CCACAGCGTCGATCAGTACAGCCTTGTGCGCGTCGAGGACCACACTGCCG
CACACAACCCCGACTTCAAGTACTTCTTCCAAAAGGACGGCCATGGTGTC
ATCAACGCCTTGCATGACATCCCCCTCTACGCTGACAAGGAAGCCGGCGT
GCTAAACTTCATCTGCGAGATTCCACGCTGGACCAACGCAAAGCTCGAGT
TGCACACCAAAACCGCACTCGCCCCCATCGTACAGGACACCAAGAAGGGT
AAGAAGCGATTCGTCCACAATGTCTACCCGTACAAGGGCTACATCTGGAA
CTATGGCTGCTTCCCGCAGACATGGGAGGACCCCACACAGGTCCACATGG
AAACCGGTGCGCTTGGCGACGGCGATCCTTTGGATGTGTGCGAGATTGGC
GGAAAGGCCTGTCGCATTGGAGAGGTCATGCAGGTCAAGCTTCTGGGCGT
GCTTGGCATGATTGATGAGGGCGAAATGGACTGGAAGGTCATTGTTGTCA
ACGTCCACGATCCTATTGCAAAAGACCTAAACGACGTTGATGACTTGTAT
CGCATCTTCCCTGGCCTTTTGCATGCCACCTTCTCCTGGTTCAGAACTTA
TAAAATCCCAGACGGGAAGGCCCTCAATCTGTTTGCCTTCCGCGAGCAGG
TGCAAAGCGCCCATTACGCAAAGGAAGTCATTGACGAGTGTCACCAAAGT
TGGAACAAGCTCATCACGGGCGTCTTGGTTCACAAGAACATCAATTGCGT
CAGCACCACCCTCAAGCACTCTGTCAAGTACACCCCGCCGGAGAAGGCGC
GCCAGGTTGTCGACGACGCCATCAAGGAAATGGAGGCCAAGGCCGAATCC
GCACCGGAAAACTCCTTTGGTCGTTCCAACTCGTGGCTGGATATGACTGT
CATTCCACCCCCGGAGTTCGACGACGGTGCGAAGAGCGCCACCGGTGTCA
AGCCTATGATGACCATCAAGAGGTTCTGCACTGAGCTGCAACGCAAGTTC
CCGCATGGGTCCAACGACCTCAGCTTGCTTATTACTGAGCTTGGCGTCGC
TTTCAAGTGCGTCAGGGCGCAGCTTTGTGATGCCCCGAATGCCAACTTTT
CGGCGTTGGCTACGTTTGCCAATTCGCAGATCCACGCGTCGCTTGCGTCT
TCTGGGCTGTGTTGTCTAATCTTCAGTTCCATCTCCAACCAGCCCCTGGC
GTTGGAGTCTGGCACTGATGTGGGCAACTACATTGTTGTGTATAACCCGT
TGTGTGGCGTTCCTGGCGCGTCGCTTGGCTCCATTTTCTCTGTATATTAC
CGAAAGTCGGCGCCGGGCAAAGAAGGCGACACTGCAGATCTGTTGCAGCG
GCCTGGCTTTGAACAGGTGGCTGCTGGCTACTGTATGTATGGATCTTCGA
CGTACCTTACCTTCAGTATGGGGTACGGAGTTCATATCTTTACGCTGGAT
TCTGTGTCTGGGCATTTTGTGCTTTCGAAGCAGCACGTGCATACGCCGGC
TACTGGCCCGCTGTACTCGGTCGACACGTCTGTGCTGCCAAATGTTGTGG
ATGGCGTTGCCAAGTTTGTGGCAGAGCTGGAGAGCGAGGGCAGTGGCAAG
AAGTTCAGACATTTGAATAATCTTGTCGCCAACTTCCACAATGTGCTCAC
GAAGGGTGGCATTCTCATGCTGCCTGGGCCGCAGAAGAAGGACTTGGCGA
AATTCCTGTCTGAGGCGGCGCCGCTGGCGTTTGTCGCGCGTCAAGCGGGG
GGAAGAGGGAGCGTGGGGAAGAGAACGCTCTTGGAGCTGTCGGCGTGGAG
CTTGGAAATGAGCGTGCCGCTGTTTGTGGGATCTGTTTCCGAGGTGGATC
GCTTGGAGGAACTTGTGCTTGGTCACTCTATTGAGGAGAAGAATAAGGTT
GACCCGAGCAAGAACCTTAGAATTTGA