Gchil2826.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2826.t1
Unique Name	Gchil2826.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	392

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004406_pilon	contig	tig00004406_pilon:726160..727335 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707012.1
Preferred name	SLC35E3
PFAMs	TPT
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K06643,ko:K15283,ko:K15285
KEGG TC	2.A.7.9
KEGG Pathway	ko01522,ko01524,ko04068,ko04110,ko04115,ko04120,ko04144,ko04151,ko04218,ko04919,ko05165,ko05169,ko05200,ko05202,ko05203,ko05205,ko05206,ko05214,ko05215,ko05218,ko05219,ko05220,map01522,map01524,map04068,map04110,map04115,map04120,map04144,map04151,map04218,map04919,map05165,map05169,map05200,map05202,map05203,map05205,map05206,map05214,map05215,map05218,map05219,map05220
Evalue	4.61e-130
EggNOG OGs	KOG1441@1\|root,KOG1441@2759\|Eukaryota
EC	2.3.2.27
Description	carbohydrate transport
COG category	Z
BRITE	ko00000,ko00001,ko01000,ko02000,ko04121,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2826	Gchil2826	Gracilaria chilensis NLEC103_M9 male	gene	tig00004406_pilon 726160..727335 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2826.t1.stop1	Gchil2826.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004406_pilon 726160..726162 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2826.t1.CDS1	Gchil2826.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004406_pilon 726160..727335 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2826.t1.exon1	Gchil2826.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004406_pilon 726160..727335 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2826.t1.start1	Gchil2826.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004406_pilon 727333..727335 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2826.t1	Gchil2826.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004406_pilon 726160..727335 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004406_pilon:726160..727335-
coding sequence from alignment at tig00004406_pilon:726160..727335-

mRNA sequence

>Gchil2826.t1 ID=Gchil2826.t1|Name=Gchil2826.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=392bp
MPAFIASVPAVRRPAASACCYSTRSHFVRPPFCTALRSHASFVSPRSASR
FRASASGASDVSKPIPQSSAQPVQKKKASRLRVAVYILLWYAFNIVYNIS
NKRVLNWFPVPWFVSWVQLLVGALYVLPIWALRIRKAPIVPKDAITTLLP
VSIAHIIGHVSTVVSLGAVAVSFTHVVKSMEPFVNVVGSAVFLNSIFPLP
VYLSLLPVVAGVVMASVTEVSFTWLGFLSAMTSNFAFTARNIFSKLSMNK
PKGENMGPANLFAVLSVMSTIVLAPFALIIDHPAKLISAWKTATVGATAV
VTAPKLLLYLFISGLFFYLYQEVAFQALDSVHPITHAVANTVKRIVIIVT
TIIVFQNPMTKANALGSAIALFGVLLYSITKNYFPEKKTSA*

spliced messenger RNA

>Gchil2826.t1 ID=Gchil2826.t1|Name=Gchil2826.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1176bp|location=Sequence derived from alignment at tig00004406_pilon:726160..727335- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTGCTTTCATTGCCTCCGTTCCCGCTGTGCGCCGCCCTGCCGCATC
GGCATGCTGCTACTCGACTCGCTCGCATTTCGTGCGTCCGCCCTTCTGCA
CCGCGTTGCGCAGCCATGCGTCTTTCGTATCCCCCCGCTCCGCCTCGCGC
TTTCGCGCCAGCGCCTCCGGCGCTTCCGACGTCTCAAAGCCCATTCCGCA
GTCCTCCGCTCAGCCCGTCCAAAAGAAAAAGGCCAGTCGTCTGCGCGTCG
CCGTGTACATCCTTCTCTGGTACGCCTTCAATATTGTTTACAACATCTCC
AATAAGAGGGTGCTCAATTGGTTCCCCGTCCCCTGGTTCGTCTCCTGGGT
CCAGCTCCTCGTCGGCGCTCTTTATGTCCTCCCGATCTGGGCGCTGCGCA
TCAGAAAGGCTCCCATCGTACCCAAGGATGCCATCACCACCCTCCTGCCT
GTCTCCATCGCTCACATCATCGGCCACGTCTCCACTGTCGTATCGCTCGG
CGCCGTCGCTGTCTCCTTCACCCACGTTGTCAAGAGCATGGAGCCTTTTG
TCAACGTTGTTGGCTCAGCCGTCTTCCTCAACTCCATCTTCCCGCTTCCC
GTTTACCTCTCTCTGCTCCCTGTAGTGGCCGGTGTCGTCATGGCCTCCGT
CACAGAAGTTTCCTTTACTTGGCTCGGATTCCTTTCTGCCATGACATCCA
ACTTTGCCTTCACCGCTCGTAATATTTTTTCAAAGCTGTCTATGAACAAG
CCCAAGGGCGAAAACATGGGTCCCGCTAACTTATTTGCAGTGCTGTCCGT
CATGTCCACCATCGTACTCGCTCCGTTTGCTCTCATCATCGATCATCCGG
CAAAGCTCATCAGCGCCTGGAAGACTGCCACCGTTGGCGCCACAGCCGTC
GTCACGGCACCAAAGTTATTGCTGTACCTTTTCATTTCTGGCTTATTCTT
CTATCTCTACCAAGAAGTTGCCTTCCAGGCACTGGACTCGGTACATCCTA
TCACCCACGCCGTTGCAAACACAGTCAAGCGAATAGTCATCATCGTGACC
ACTATCATCGTCTTCCAAAACCCTATGACCAAAGCTAACGCCCTTGGTTC
TGCCATTGCTCTCTTTGGCGTTCTTCTGTACTCCATCACGAAGAACTACT
TCCCGGAGAAGAAGACAAGCGCATGA

protein sequence of Gchil2826.t1

>Gchil2826.t1 ID=Gchil2826.t1|Name=Gchil2826.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=392bp
MPAFIASVPAVRRPAASACCYSTRSHFVRPPFCTALRSHASFVSPRSASR
FRASASGASDVSKPIPQSSAQPVQKKKASRLRVAVYILLWYAFNIVYNIS
NKRVLNWFPVPWFVSWVQLLVGALYVLPIWALRIRKAPIVPKDAITTLLP
VSIAHIIGHVSTVVSLGAVAVSFTHVVKSMEPFVNVVGSAVFLNSIFPLP
VYLSLLPVVAGVVMASVTEVSFTWLGFLSAMTSNFAFTARNIFSKLSMNK
PKGENMGPANLFAVLSVMSTIVLAPFALIIDHPAKLISAWKTATVGATAV
VTAPKLLLYLFISGLFFYLYQEVAFQALDSVHPITHAVANTVKRIVIIVT
TIIVFQNPMTKANALGSAIALFGVLLYSITKNYFPEKKTSA*

mRNA from alignment at tig00004406_pilon:726160..727335-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2826.t1 ID=Gchil2826.t1|Name=Gchil2826.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1176bp|location=Sequence derived from alignment at tig00004406_pilon:726160..727335- (Gracilaria chilensis NLEC103_M9 male)
ATGCCTGCTTTCATTGCCTCCGTTCCCGCTGTGCGCCGCCCTGCCGCATC
GGCATGCTGCTACTCGACTCGCTCGCATTTCGTGCGTCCGCCCTTCTGCA
CCGCGTTGCGCAGCCATGCGTCTTTCGTATCCCCCCGCTCCGCCTCGCGC
TTTCGCGCCAGCGCCTCCGGCGCTTCCGACGTCTCAAAGCCCATTCCGCA
GTCCTCCGCTCAGCCCGTCCAAAAGAAAAAGGCCAGTCGTCTGCGCGTCG
CCGTGTACATCCTTCTCTGGTACGCCTTCAATATTGTTTACAACATCTCC
AATAAGAGGGTGCTCAATTGGTTCCCCGTCCCCTGGTTCGTCTCCTGGGT
CCAGCTCCTCGTCGGCGCTCTTTATGTCCTCCCGATCTGGGCGCTGCGCA
TCAGAAAGGCTCCCATCGTACCCAAGGATGCCATCACCACCCTCCTGCCT
GTCTCCATCGCTCACATCATCGGCCACGTCTCCACTGTCGTATCGCTCGG
CGCCGTCGCTGTCTCCTTCACCCACGTTGTCAAGAGCATGGAGCCTTTTG
TCAACGTTGTTGGCTCAGCCGTCTTCCTCAACTCCATCTTCCCGCTTCCC
GTTTACCTCTCTCTGCTCCCTGTAGTGGCCGGTGTCGTCATGGCCTCCGT
CACAGAAGTTTCCTTTACTTGGCTCGGATTCCTTTCTGCCATGACATCCA
ACTTTGCCTTCACCGCTCGTAATATTTTTTCAAAGCTGTCTATGAACAAG
CCCAAGGGCGAAAACATGGGTCCCGCTAACTTATTTGCAGTGCTGTCCGT
CATGTCCACCATCGTACTCGCTCCGTTTGCTCTCATCATCGATCATCCGG
CAAAGCTCATCAGCGCCTGGAAGACTGCCACCGTTGGCGCCACAGCCGTC
GTCACGGCACCAAAGTTATTGCTGTACCTTTTCATTTCTGGCTTATTCTT
CTATCTCTACCAAGAAGTTGCCTTCCAGGCACTGGACTCGGTACATCCTA
TCACCCACGCCGTTGCAAACACAGTCAAGCGAATAGTCATCATCGTGACC
ACTATCATCGTCTTCCAAAACCCTATGACCAAAGCTAACGCCCTTGGTTC
TGCCATTGCTCTCTTTGGCGTTCTTCTGTACTCCATCACGAAGAACTACT
TCCCGGAGAAGAAGACAAGCGCATGA

Coding sequence (CDS) from alignment at tig00004406_pilon:726160..727335-

>Gchil2826.t1 ID=Gchil2826.t1|Name=Gchil2826.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1176bp|location=Sequence derived from alignment at tig00004406_pilon:726160..727335- (Gracilaria chilensis NLEC103_M9 male)
ATGCCTGCTTTCATTGCCTCCGTTCCCGCTGTGCGCCGCCCTGCCGCATC
GGCATGCTGCTACTCGACTCGCTCGCATTTCGTGCGTCCGCCCTTCTGCA
CCGCGTTGCGCAGCCATGCGTCTTTCGTATCCCCCCGCTCCGCCTCGCGC
TTTCGCGCCAGCGCCTCCGGCGCTTCCGACGTCTCAAAGCCCATTCCGCA
GTCCTCCGCTCAGCCCGTCCAAAAGAAAAAGGCCAGTCGTCTGCGCGTCG
CCGTGTACATCCTTCTCTGGTACGCCTTCAATATTGTTTACAACATCTCC
AATAAGAGGGTGCTCAATTGGTTCCCCGTCCCCTGGTTCGTCTCCTGGGT
CCAGCTCCTCGTCGGCGCTCTTTATGTCCTCCCGATCTGGGCGCTGCGCA
TCAGAAAGGCTCCCATCGTACCCAAGGATGCCATCACCACCCTCCTGCCT
GTCTCCATCGCTCACATCATCGGCCACGTCTCCACTGTCGTATCGCTCGG
CGCCGTCGCTGTCTCCTTCACCCACGTTGTCAAGAGCATGGAGCCTTTTG
TCAACGTTGTTGGCTCAGCCGTCTTCCTCAACTCCATCTTCCCGCTTCCC
GTTTACCTCTCTCTGCTCCCTGTAGTGGCCGGTGTCGTCATGGCCTCCGT
CACAGAAGTTTCCTTTACTTGGCTCGGATTCCTTTCTGCCATGACATCCA
ACTTTGCCTTCACCGCTCGTAATATTTTTTCAAAGCTGTCTATGAACAAG
CCCAAGGGCGAAAACATGGGTCCCGCTAACTTATTTGCAGTGCTGTCCGT
CATGTCCACCATCGTACTCGCTCCGTTTGCTCTCATCATCGATCATCCGG
CAAAGCTCATCAGCGCCTGGAAGACTGCCACCGTTGGCGCCACAGCCGTC
GTCACGGCACCAAAGTTATTGCTGTACCTTTTCATTTCTGGCTTATTCTT
CTATCTCTACCAAGAAGTTGCCTTCCAGGCACTGGACTCGGTACATCCTA
TCACCCACGCCGTTGCAAACACAGTCAAGCGAATAGTCATCATCGTGACC
ACTATCATCGTCTTCCAAAACCCTATGACCAAAGCTAACGCCCTTGGTTC
TGCCATTGCTCTCTTTGGCGTTCTTCTGTACTCCATCACGAAGAACTACT
TCCCGGAGAAGAAGACAAGCGCATGA