Gchil2816.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2816.t1
Unique NameGchil2816.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length141
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004406_piloncontigtig00004406_pilon:705257..705679 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704325.1
PFAMsClpS
Max annot lvl2759|Eukaryota
Evalue1.96e-29
EggNOG OGs2CHM4@1|root,2SC6E@2759|Eukaryota
DescriptionATP-dependent Clp protease adaptor protein ClpS
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2816Gchil2816Gracilaria chilensis NLEC103_M9 malegenetig00004406_pilon 705257..705679 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2816.t1.start1Gchil2816.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004406_pilon 705257..705259 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2816.t1.CDS1Gchil2816.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 705257..705679 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2816.t1.exon1Gchil2816.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 705257..705679 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2816.t1.stop1Gchil2816.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004406_pilon 705677..705679 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2816.t1Gchil2816.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004406_pilon 705257..705679 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2816.t1 ID=Gchil2816.t1|Name=Gchil2816.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=141bp
MPPRRPARLPCMQLGAPSTQIGRPKTQIKKDIGRVTAQPSQPEADTERGS
AKARPRRKTLADEVPMFKVILLGDEEYVEAHVVTQLQKTVQLDKKEATRV
FWEAQGSGSSIICVVCEEHAEFYAQQLKRQEIFVIIEKDE*
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spliced messenger RNA

>Gchil2816.t1 ID=Gchil2816.t1|Name=Gchil2816.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=423bp|location=Sequence derived from alignment at tig00004406_pilon:705257..705679+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCCGCGCAGGCCGGCGCGTCTTCCTTGTATGCAGCTCGGCGCCCC
TTCCACGCAAATCGGCCGGCCAAAGACCCAAATCAAGAAGGATATCGGCC
GCGTCACCGCCCAGCCTTCGCAGCCAGAGGCAGACACCGAAAGAGGCTCT
GCAAAGGCGCGTCCCCGTCGCAAAACCCTTGCCGACGAGGTTCCCATGTT
CAAGGTCATTCTGCTTGGCGATGAAGAGTACGTCGAAGCTCACGTCGTCA
CCCAGCTGCAGAAAACTGTGCAACTGGACAAGAAGGAAGCCACAAGGGTT
TTTTGGGAGGCTCAGGGTAGTGGTAGTAGTATTATCTGTGTCGTTTGTGA
AGAACACGCCGAGTTTTATGCACAGCAACTCAAGAGACAGGAGATTTTTG
TCATCATAGAGAAGGATGAGTAG
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protein sequence of Gchil2816.t1

>Gchil2816.t1 ID=Gchil2816.t1|Name=Gchil2816.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=141bp
MPPRRPARLPCMQLGAPSTQIGRPKTQIKKDIGRVTAQPSQPEADTERGS
AKARPRRKTLADEVPMFKVILLGDEEYVEAHVVTQLQKTVQLDKKEATRV
FWEAQGSGSSIICVVCEEHAEFYAQQLKRQEIFVIIEKDE*
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mRNA from alignment at tig00004406_pilon:705257..705679+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2816.t1 ID=Gchil2816.t1|Name=Gchil2816.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=423bp|location=Sequence derived from alignment at tig00004406_pilon:705257..705679+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCGCCGCGCAGGCCGGCGCGTCTTCCTTGTATGCAGCTCGGCGCCCC
TTCCACGCAAATCGGCCGGCCAAAGACCCAAATCAAGAAGGATATCGGCC
GCGTCACCGCCCAGCCTTCGCAGCCAGAGGCAGACACCGAAAGAGGCTCT
GCAAAGGCGCGTCCCCGTCGCAAAACCCTTGCCGACGAGGTTCCCATGTT
CAAGGTCATTCTGCTTGGCGATGAAGAGTACGTCGAAGCTCACGTCGTCA
CCCAGCTGCAGAAAACTGTGCAACTGGACAAGAAGGAAGCCACAAGGGTT
TTTTGGGAGGCTCAGGGTAGTGGTAGTAGTATTATCTGTGTCGTTTGTGA
AGAACACGCCGAGTTTTATGCACAGCAACTCAAGAGACAGGAGATTTTTG
TCATCATAGAGAAGGATGAGTAG
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Coding sequence (CDS) from alignment at tig00004406_pilon:705257..705679+

>Gchil2816.t1 ID=Gchil2816.t1|Name=Gchil2816.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=423bp|location=Sequence derived from alignment at tig00004406_pilon:705257..705679+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCGCCGCGCAGGCCGGCGCGTCTTCCTTGTATGCAGCTCGGCGCCCC
TTCCACGCAAATCGGCCGGCCAAAGACCCAAATCAAGAAGGATATCGGCC
GCGTCACCGCCCAGCCTTCGCAGCCAGAGGCAGACACCGAAAGAGGCTCT
GCAAAGGCGCGTCCCCGTCGCAAAACCCTTGCCGACGAGGTTCCCATGTT
CAAGGTCATTCTGCTTGGCGATGAAGAGTACGTCGAAGCTCACGTCGTCA
CCCAGCTGCAGAAAACTGTGCAACTGGACAAGAAGGAAGCCACAAGGGTT
TTTTGGGAGGCTCAGGGTAGTGGTAGTAGTATTATCTGTGTCGTTTGTGA
AGAACACGCCGAGTTTTATGCACAGCAACTCAAGAGACAGGAGATTTTTG
TCATCATAGAGAAGGATGAGTAG
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