Gchil2813.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2813.t1
Unique NameGchil2813.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length87
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004406_piloncontigtig00004406_pilon:700929..701668 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2813Gchil2813Gracilaria chilensis NLEC103_M9 malegenetig00004406_pilon 700929..701668 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2813.t1Gchil2813.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004406_pilon 700929..701668 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2813.t1.stop1Gchil2813.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004406_pilon 700929..700931 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2813.t1.CDS1Gchil2813.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 700929..701044 -
Gchil2813.t1.CDS2Gchil2813.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 701310..701345 -
Gchil2813.t1.CDS3Gchil2813.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 701560..701668 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2813.t1.exon1Gchil2813.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 700929..701044 -
Gchil2813.t1.exon2Gchil2813.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 701310..701345 -
Gchil2813.t1.exon3Gchil2813.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 701560..701668 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2813.t1.intron1Gchil2813.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004406_pilon 701045..701309 -
Gchil2813.t1.intron2Gchil2813.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004406_pilon 701346..701559 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2813.t1.start1Gchil2813.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004406_pilon 701666..701668 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2813.t1 ID=Gchil2813.t1|Name=Gchil2813.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=87bp
MTLPSSLLHLHVAQQFCCAPRPFASHKATFSYECIQALANTSLYKTHKET
KSVISKAISLTLRTTRLPPYIAMLKTPDLLNPTLQS*
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spliced messenger RNA

>Gchil2813.t1 ID=Gchil2813.t1|Name=Gchil2813.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=261bp|location=Sequence derived from alignment at tig00004406_pilon:700929..701668- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTTTACCTTCCTCTCTTCTTCACCTACATGTCGCCCAACAATTCTG
TTGCGCCCCGAGACCCTTCGCTTCTCACAAGGCCACTTTCAGTTACGAGT
GCATACAAGCTCTCGCAAACACATCGCTCTACAAAACACACAAAGAAACA
AAATCAGTTATATCTAAAGCTATCTCGTTAACTCTGCGAACAACCCGACT
TCCGCCGTACATAGCCATGCTTAAAACCCCCGATCTATTAAACCCAACTT
TACAATCGTAG
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protein sequence of Gchil2813.t1

>Gchil2813.t1 ID=Gchil2813.t1|Name=Gchil2813.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=87bp
MTLPSSLLHLHVAQQFCCAPRPFASHKATFSYECIQALANTSLYKTHKET
KSVISKAISLTLRTTRLPPYIAMLKTPDLLNPTLQS*
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mRNA from alignment at tig00004406_pilon:700929..701668-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2813.t1 ID=Gchil2813.t1|Name=Gchil2813.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=740bp|location=Sequence derived from alignment at tig00004406_pilon:700929..701668- (Gracilaria chilensis NLEC103_M9 male)
ATGACTTTACCTTCCTCTCTTCTTCACCTACATGTCGCCCAACAATTCTG
TTGCGCCCCGAGACCCTTCGCTTCTCACAAGGCCACTTTCAGTTACGAGT
GCATACAAGGTGCGTTATACCCCACATAATGCGATTTCTATGATGTATGA
CGGGAATGAAGATTGTTTGTGTTTTCAACCATAGAATCCAAAGGAACCTT
TCACGGTCCGCTGTCGAACCTATTTTCGTTTCAGCCTTGTCCGACCCTGT
CTATCTCCCCTCTCGCATCCACGTGATCTTTGCATTCTGACTGAAATCTA
AATCTGTGTCAAACCCTCAACAGCTCTCGCAAACACATCGCTCTACAAAA
CACACAAAGGTATGTTTGAGCCGGTGCCATCGTGTCTCCAAGCGGCACTG
ACGATACTCCAAACATTACGACTCACTTATGCCATCCGAAGAGAAGTTGT
CAAACTTTCTCTGTCGACTTTTTCCAATTGTTCTGAAGCCCACAAAGTCT
ACAAAAAAAAGGAAACAGCAGCTCACCAAACGCTGCGTACCACAAGCTTC
ATACCAACACTAACGTTTTGTTTATTTGTTTTCTTGCGCAAAACACTACT
TCAACCCACAAACGCGTTCCTCAGAAACAAAATCAGTTATATCTAAAGCT
ATCTCGTTAACTCTGCGAACAACCCGACTTCCGCCGTACATAGCCATGCT
TAAAACCCCCGATCTATTAAACCCAACTTTACAATCGTAG
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Coding sequence (CDS) from alignment at tig00004406_pilon:700929..701668-

>Gchil2813.t1 ID=Gchil2813.t1|Name=Gchil2813.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=261bp|location=Sequence derived from alignment at tig00004406_pilon:700929..701668- (Gracilaria chilensis NLEC103_M9 male)
ATGACTTTACCTTCCTCTCTTCTTCACCTACATGTCGCCCAACAATTCTG
TTGCGCCCCGAGACCCTTCGCTTCTCACAAGGCCACTTTCAGTTACGAGT
GCATACAAGCTCTCGCAAACACATCGCTCTACAAAACACACAAAGAAACA
AAATCAGTTATATCTAAAGCTATCTCGTTAACTCTGCGAACAACCCGACT
TCCGCCGTACATAGCCATGCTTAAAACCCCCGATCTATTAAACCCAACTT
TACAATCGTAG
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