Gchil2811.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2811.t1
Unique NameGchil2811.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length73
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004406_piloncontigtig00004406_pilon:602077..603146 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2811Gchil2811Gracilaria chilensis NLEC103_M9 malegenetig00004406_pilon 602077..603146 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2811.t1Gchil2811.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004406_pilon 602077..603146 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2811.t1.start1Gchil2811.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004406_pilon 602077..602079 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2811.t1.CDS1Gchil2811.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 602077..602095 +
Gchil2811.t1.CDS2Gchil2811.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 602835..602901 +
Gchil2811.t1.CDS3Gchil2811.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 603014..603146 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2811.t1.exon1Gchil2811.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 602077..602095 +
Gchil2811.t1.exon2Gchil2811.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 602835..602901 +
Gchil2811.t1.exon3Gchil2811.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 603014..603146 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2811.t1.intron1Gchil2811.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004406_pilon 602096..602834 +
Gchil2811.t1.intron2Gchil2811.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004406_pilon 602902..603013 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2811.t1.stop1Gchil2811.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004406_pilon 603144..603146 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2811.t1 ID=Gchil2811.t1|Name=Gchil2811.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=73bp
MRVQYLSSALPLLAGDSCCRDTTKIAANPKEYLDQKIFDRFEKENHALFN
QLVKKHGNLEFLDLLITKNSGV*
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spliced messenger RNA

>Gchil2811.t1 ID=Gchil2811.t1|Name=Gchil2811.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=219bp|location=Sequence derived from alignment at tig00004406_pilon:602077..603146+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTGTACAGTATTTGAgttccgcaCTCCCCCTCTTGGCCGGAGACAG
CTGTTGTCGAGACACTACAAAGATCGCGGCCAATCCTAAAGAGTACCTCG
ATCAAAAGATCTTTGACCGCTTTGAGAAAGAAAACCACGCACTTTTCAAC
CAACTGGTGAAAAAGCACGGCAACCTTGAGTTCCTCGATCTATTGATCAC
TAAGAACTCAGGCGTCTAA
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protein sequence of Gchil2811.t1

>Gchil2811.t1 ID=Gchil2811.t1|Name=Gchil2811.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=73bp
MRVQYLSSALPLLAGDSCCRDTTKIAANPKEYLDQKIFDRFEKENHALFN
QLVKKHGNLEFLDLLITKNSGV*
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mRNA from alignment at tig00004406_pilon:602077..603146+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2811.t1 ID=Gchil2811.t1|Name=Gchil2811.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1070bp|location=Sequence derived from alignment at tig00004406_pilon:602077..603146+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGTGTACAGTATTTGAGTAAACACAACGCATTTCTGATGAGAGTGGC
AGCTAAATGTTGCTAACTCTCAGCATCATTTCCTGTTTTTCGTATTCACA
GCTTACGCCTTACGCCCTGCCCTTTCCACAGTCGCGCTGCCGCGCTGAGT
TATTCATTTCGACGCTGGGCTGTTTAGTTTCTTTTCTCGTCGCAATTGGG
ACTCTCATGTAAACTTTTGCACTCTCCCACCAGCAGCCGCCCAACACGCG
CTGCTGCATTTGCGCGCGTGCCTACGTGTCATCACGCCCGATGGCTACAC
CATTCATCTGGGAAAGCGATACCTTCCGGAAGCAGTTTTGCGTTCGCTTT
TGGCAGGCTGCTTTTATATACAGTACAAGTCCCAGTCACGTGTCAATTGC
CACGTGGCATGCGCACTGACGCGTCATTACACTGGGGAGGGGAAGGGACA
CGCGCCTGCTTTGTATCAGTTTATGCCCTTTTTTGGGACAACAAACAGTC
TGTTAGCACACTGCGGTTTTTTGATTTCATGATAATTTTGACGTTTTTCT
Gtcgtacttgtagtggcagcgtcgcgcagtggaactatcgtagagcgcat
gcgaaatcagaaaacgggaccaagtaccccgttctccttttggagcgacc
atgttcgcactggccgctccgggctttgtttacttgccccgggaatcgga
cgcgcgatctccgacagcacttcctattgttacacgtttcgtgtgttgtc
gattttaggttccgcaCTCCCCCTCTTGGCCGGAGACAGCTGTTGTCGAG
ACACTACAAAGATCGCGGCCAATCCGTAAGTAACTCACGGACGACATCGC
CGCACCACGCTTCACCACGTCAATCATATGCTCTCTAACTGCTTTGCGTT
TTTACTGCTGTTTCTTTTGTGCGTGCAATTAAAAAAGTAAAGAGTACCTC
GATCAAAAGATCTTTGACCGCTTTGAGAAAGAAAACCACGCACTTTTCAA
CCAACTGGTGAAAAAGCACGGCAACCTTGAGTTCCTCGATCTATTGATCA
CTAAGAACTCAGGCGTCTAA
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Coding sequence (CDS) from alignment at tig00004406_pilon:602077..603146+

>Gchil2811.t1 ID=Gchil2811.t1|Name=Gchil2811.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=219bp|location=Sequence derived from alignment at tig00004406_pilon:602077..603146+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGTGTACAGTATTTGAgttccgcaCTCCCCCTCTTGGCCGGAGACAG
CTGTTGTCGAGACACTACAAAGATCGCGGCCAATCCTAAAGAGTACCTCG
ATCAAAAGATCTTTGACCGCTTTGAGAAAGAAAACCACGCACTTTTCAAC
CAACTGGTGAAAAAGCACGGCAACCTTGAGTTCCTCGATCTATTGATCAC
TAAGAACTCAGGCGTCTAA
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