Gchil2808.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2808.t1
Unique NameGchil2808.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length342
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004406_piloncontigtig00004406_pilon:596933..597958 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2808Gchil2808Gracilaria chilensis NLEC103_M9 malegenetig00004406_pilon 596933..597958 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2808.t1.stop1Gchil2808.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004406_pilon 596933..596935 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2808.t1.CDS1Gchil2808.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 596933..597958 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2808.t1.exon1Gchil2808.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 596933..597958 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2808.t1.start1Gchil2808.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004406_pilon 597956..597958 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2808.t1Gchil2808.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004406_pilon 596933..597958 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2808.t1 ID=Gchil2808.t1|Name=Gchil2808.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=342bp
MSKGSTTSDEYDSSLLNQGPHKPLSRGRANNAILQTAALLTIWSLFVINE
GAIRLVSSNPSQGLFNGSRPPPFIPFLGGLFEVIFGLLGLFIAGSAFMLR
QYNIRLIKISMMIQTILGLYVFVVFVFVLPSFRSVDLTEPIMRGLSMRQS
RFIIVMGIFTSFHFCLALQGGQFVFMARLIGETAGMDFLLQKSRHKMRAV
FWNANLALAGVWTLVTGALINATVGTGRLSTPYISPPNIGVFPILTVVTG
LAMICWGGYAVKLAMKERTPSPLFFVLWTVIYLLCFLNFTIVQLAYINAE
ATGFNEGDGATALHAGLIFVVTTLGPYFLYIAAKERNGHAV*
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spliced messenger RNA

>Gchil2808.t1 ID=Gchil2808.t1|Name=Gchil2808.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1026bp|location=Sequence derived from alignment at tig00004406_pilon:596933..597958- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTAAAGGCTCAACTACGTCCGATGAATACGATAGCTCTCTGCTCAA
CCAAGGCCCCCACAAGCCTTTGTCGCGAGGCAGGGCAAATAATGCAATCT
TACAAACCGCAGCCTTGCTCACAATATGGAGCCTTTTCGTCATCAATGAA
GGTGCCATTCGCCTGGTCAGTAGTAATCCGTCACAAGGCTTGTTCAATGG
CAGTAGACCGCCGCCATTCATCCCCTTTCTAGGCGGTTTGTTCGAAGTGA
TCTTCGGCCTACTAGGTCTGTTCATTGCGGGTTCGGCGTTTATGCTGAGA
CAGTACAACATCAGACTCATCAAGATTTCCATGATGATTCAAACTATCCT
TGGCCTTTATGTATTCGTCGTGTTTGTATTTGTGTTGCCATCTTTCCGAT
CCGTTGACCTGACGGAACCTATCATGCGTGGATTATCAATGCGTCAGAGT
CGCTTTATCATTGTGATGGGGATCTTCACTTCTTTTCACTTTTGCCTTGC
TCTGCAAGGTGGTCAGTTCGTGTTCATGGCTCGCTTGATCGGAGAAACAG
CCGGAATGGATTTCCTTTTGCAAAAATCAAGACACAAGATGAGAGCAGTA
TTCTGGAACGCAAATCTAGCACTAGCCGGAGTTTGGACGTTGGTTACAGG
TGCACTGATAAACGCAACCGTCGGCACAGGAAGACTGTCGACACCATACA
TATCACCGCCAAACATTGGGGTGTTTCCTATTCTCACAGTTGTCACGGGT
CTTGCCATGATATGTTGGGGCGGTTATGCCGTAAAGCTTGCGATGAAGGA
ACGCACCCCCTCTCCGCTGTTTTTTGTTTTATGGACAGTGATATATTTGT
TGTGTTTTCTAAACTTCACAATCGTTCAGCTAGCATATATTAATGCTGAG
GCTACTGGCTTCAATGAGGGCGATGGTGCGACCGCTTTGCATGCTGGCTT
GATTTTCGTGGTCACTACACTTGGGCCGTATTTTCTATACATTGCTGCTA
AGGAGCGCAACGGACACGCTGTGTGA
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protein sequence of Gchil2808.t1

>Gchil2808.t1 ID=Gchil2808.t1|Name=Gchil2808.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=342bp
MSKGSTTSDEYDSSLLNQGPHKPLSRGRANNAILQTAALLTIWSLFVINE
GAIRLVSSNPSQGLFNGSRPPPFIPFLGGLFEVIFGLLGLFIAGSAFMLR
QYNIRLIKISMMIQTILGLYVFVVFVFVLPSFRSVDLTEPIMRGLSMRQS
RFIIVMGIFTSFHFCLALQGGQFVFMARLIGETAGMDFLLQKSRHKMRAV
FWNANLALAGVWTLVTGALINATVGTGRLSTPYISPPNIGVFPILTVVTG
LAMICWGGYAVKLAMKERTPSPLFFVLWTVIYLLCFLNFTIVQLAYINAE
ATGFNEGDGATALHAGLIFVVTTLGPYFLYIAAKERNGHAV*
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mRNA from alignment at tig00004406_pilon:596933..597958-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2808.t1 ID=Gchil2808.t1|Name=Gchil2808.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1026bp|location=Sequence derived from alignment at tig00004406_pilon:596933..597958- (Gracilaria chilensis NLEC103_M9 male)
ATGAGTAAAGGCTCAACTACGTCCGATGAATACGATAGCTCTCTGCTCAA
CCAAGGCCCCCACAAGCCTTTGTCGCGAGGCAGGGCAAATAATGCAATCT
TACAAACCGCAGCCTTGCTCACAATATGGAGCCTTTTCGTCATCAATGAA
GGTGCCATTCGCCTGGTCAGTAGTAATCCGTCACAAGGCTTGTTCAATGG
CAGTAGACCGCCGCCATTCATCCCCTTTCTAGGCGGTTTGTTCGAAGTGA
TCTTCGGCCTACTAGGTCTGTTCATTGCGGGTTCGGCGTTTATGCTGAGA
CAGTACAACATCAGACTCATCAAGATTTCCATGATGATTCAAACTATCCT
TGGCCTTTATGTATTCGTCGTGTTTGTATTTGTGTTGCCATCTTTCCGAT
CCGTTGACCTGACGGAACCTATCATGCGTGGATTATCAATGCGTCAGAGT
CGCTTTATCATTGTGATGGGGATCTTCACTTCTTTTCACTTTTGCCTTGC
TCTGCAAGGTGGTCAGTTCGTGTTCATGGCTCGCTTGATCGGAGAAACAG
CCGGAATGGATTTCCTTTTGCAAAAATCAAGACACAAGATGAGAGCAGTA
TTCTGGAACGCAAATCTAGCACTAGCCGGAGTTTGGACGTTGGTTACAGG
TGCACTGATAAACGCAACCGTCGGCACAGGAAGACTGTCGACACCATACA
TATCACCGCCAAACATTGGGGTGTTTCCTATTCTCACAGTTGTCACGGGT
CTTGCCATGATATGTTGGGGCGGTTATGCCGTAAAGCTTGCGATGAAGGA
ACGCACCCCCTCTCCGCTGTTTTTTGTTTTATGGACAGTGATATATTTGT
TGTGTTTTCTAAACTTCACAATCGTTCAGCTAGCATATATTAATGCTGAG
GCTACTGGCTTCAATGAGGGCGATGGTGCGACCGCTTTGCATGCTGGCTT
GATTTTCGTGGTCACTACACTTGGGCCGTATTTTCTATACATTGCTGCTA
AGGAGCGCAACGGACACGCTGTGTGA
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Coding sequence (CDS) from alignment at tig00004406_pilon:596933..597958-

>Gchil2808.t1 ID=Gchil2808.t1|Name=Gchil2808.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1026bp|location=Sequence derived from alignment at tig00004406_pilon:596933..597958- (Gracilaria chilensis NLEC103_M9 male)
ATGAGTAAAGGCTCAACTACGTCCGATGAATACGATAGCTCTCTGCTCAA
CCAAGGCCCCCACAAGCCTTTGTCGCGAGGCAGGGCAAATAATGCAATCT
TACAAACCGCAGCCTTGCTCACAATATGGAGCCTTTTCGTCATCAATGAA
GGTGCCATTCGCCTGGTCAGTAGTAATCCGTCACAAGGCTTGTTCAATGG
CAGTAGACCGCCGCCATTCATCCCCTTTCTAGGCGGTTTGTTCGAAGTGA
TCTTCGGCCTACTAGGTCTGTTCATTGCGGGTTCGGCGTTTATGCTGAGA
CAGTACAACATCAGACTCATCAAGATTTCCATGATGATTCAAACTATCCT
TGGCCTTTATGTATTCGTCGTGTTTGTATTTGTGTTGCCATCTTTCCGAT
CCGTTGACCTGACGGAACCTATCATGCGTGGATTATCAATGCGTCAGAGT
CGCTTTATCATTGTGATGGGGATCTTCACTTCTTTTCACTTTTGCCTTGC
TCTGCAAGGTGGTCAGTTCGTGTTCATGGCTCGCTTGATCGGAGAAACAG
CCGGAATGGATTTCCTTTTGCAAAAATCAAGACACAAGATGAGAGCAGTA
TTCTGGAACGCAAATCTAGCACTAGCCGGAGTTTGGACGTTGGTTACAGG
TGCACTGATAAACGCAACCGTCGGCACAGGAAGACTGTCGACACCATACA
TATCACCGCCAAACATTGGGGTGTTTCCTATTCTCACAGTTGTCACGGGT
CTTGCCATGATATGTTGGGGCGGTTATGCCGTAAAGCTTGCGATGAAGGA
ACGCACCCCCTCTCCGCTGTTTTTTGTTTTATGGACAGTGATATATTTGT
TGTGTTTTCTAAACTTCACAATCGTTCAGCTAGCATATATTAATGCTGAG
GCTACTGGCTTCAATGAGGGCGATGGTGCGACCGCTTTGCATGCTGGCTT
GATTTTCGTGGTCACTACACTTGGGCCGTATTTTCTATACATTGCTGCTA
AGGAGCGCAACGGACACGCTGTGTGA
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