Gchil2803.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2803.t1
Unique NameGchil2803.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length666
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004406_piloncontigtig00004406_pilon:584562..586559 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2803Gchil2803Gracilaria chilensis NLEC103_M9 malegenetig00004406_pilon 584562..586559 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2803.t1.stop1Gchil2803.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004406_pilon 584562..584564 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2803.t1.CDS1Gchil2803.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 584562..586559 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2803.t1.exon1Gchil2803.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 584562..586559 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2803.t1.start1Gchil2803.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004406_pilon 586557..586559 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2803.t1Gchil2803.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004406_pilon 584562..586559 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2803.t1 ID=Gchil2803.t1|Name=Gchil2803.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=666bp
MEIAFIVAAIACSLGLGGASFQITRRSTQNGSKARSHDDDDAVSQEELCL
LQNKESSHSESAEIAGILRKLRKWISPADRARSQDLLHYSYGITEFQKLK
EEQKEYFNMLGSTKERVILSLCLSAEDNLESSQLTTRKKVPVRYGVELKD
ASLFSIACSCLNLNRPFVVQGFNGRKIDGLDLVQGDSWRYYTLSTIINSP
LGLSSLCQCGIDRPAEPSVDPKKDIIATIVFRLAWSISKYLPCPCGKDER
VSEEERFDMYCRAVFSVCQRLEDVFALMSRNFEHDLWESSWAGIKIRHSR
WDRRLNISGNNPSSFGRAMYMVSRMYNTFLLAAYSENEIEELMVPGLPQQ
ILSNESIEIVCARLTEARGAETSLDWLCYNKWNTSEVHCVPTHKLPVHTE
IKRAIRFMDSTGVEYLGDMALEELKPARIPFGKERLEWVAFSGGVSEGIP
MIRKPQFYTKHNIFCIGRPRVKDIPDVDATQMSFMENGTRVTIAINGDGA
VLSFKKTTRNVKKVLRGTLLLTMLDNGLGFNLSRLLGEDLYRDDFMIVNE
ALSMKYGEEVFDFIISNLMSGKIAVHVNSPAACYVPKTSKRSGGVVLTTP
LRGEFWQDKSFVLTQQNLYWLPKQGYNYFKVQRKAVDGLLTMEEVEEIDG
QALYKCSAILDTPVV*
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spliced messenger RNA

>Gchil2803.t1 ID=Gchil2803.t1|Name=Gchil2803.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1998bp|location=Sequence derived from alignment at tig00004406_pilon:584562..586559- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAATCGCATTCATCGTTGCTGCCATTGCTTGCTCTTTAGGATTGGG
AGGAGCTTCTTTCCAGATTACGCGACGATCAACTCAAAATGGCTCTAAAG
CTCGATCACATGATGATGATGATGCAGTAAGTCAAGAAGAACTTTGTCTT
CTCCAGAACAAAGAATCTTCCCATTCGGAGTCGGCAGAAATAGCTGGCAT
CTTGAGGAAGCTGAGAAAATGGATTTCTCCAGCTGATCGGGCACGATCTC
AGGACCTCCTTCACTACTCATATGGTATCACAGAATTCCAAAAACTGAAA
GAGGAGCAGAAGGAGTACTTCAATATGCTTGGTTCCACGAAGGAGCGTGT
TATTCTAAGTTTGTGCTTGTCGGCCGAAGACAATCTCGAAAGCTCGCAAC
TTACAACTCGAAAAAAAGTTCCCGTTCGATATGGCGTCGAACTTAAGGAT
GCTTCTCTGTTTAGTATAGCTTGCTCATGCCTCAATCTTAACCGTCCATT
TGTCGTCCAGGGTTTCAATGGAAGAAAGATTGATGGATTGGATTTGGTGC
AAGGGGATAGCTGGCGTTATTATACCTTGAGTACGATCATAAACAGTCCA
TTGGGTTTGTCCAGTTTATGCCAGTGTGGAATAGATCGTCCAGCAGAGCC
ATCCGTGGACCCAAAAAAAGACATCATCGCTACAATCGTTTTCAGGTTGG
CATGGTCGATATCGAAATACTTACCTTGCCCCTGCGGAAAGGATGAGAGA
GTGTCTGAAGAAGAAAGATTTGATATGTATTGCCGCGCTGTGTTCTCCGT
TTGTCAAAGACTGGAAGATGTTTTTGCCTTAATGTCAAGAAACTTCGAAC
ATGATTTATGGGAATCATCATGGGCTGGCATTAAAATCAGACACAGTCGT
TGGGATCGAAGGTTGAACATCTCAGGCAACAATCCTTCCAGCTTTGGCCG
AGCCATGTACATGGTTTCCAGAATGTACAACACTTTCTTATTAGCTGCCT
ACTCTGAGAACGAAATAGAGGAGCTAATGGTTCCTGGTCTCCCGCAACAG
ATTTTGAGCAACGAAAGCATTGAGATTGTTTGTGCAAGGCTCACAGAAGC
GCGTGGCGCGGAGACGAGTCTAGACTGGCTCTGCTACAACAAATGGAACA
CGAGTGAGGTCCATTGCGTGCCCACTCATAAGCTACCTGTACACACCGAA
ATCAAACGAGCGATCCGGTTCATGGACAGTACAGGTGTTGAATATCTCGG
AGACATGGCTTTAGAAGAGCTTAAACCAGCACGCATTCCGTTTGGAAAGG
AGCGCTTAGAGTGGGTGGCGTTTTCTGGAGGAGTATCTGAGGGAATTCCA
ATGATTAGAAAGCCGCAGTTCTACACGAAGCACAACATTTTTTGCATAGG
AAGACCCCGGGTCAAGGATATTCCAGATGTCGATGCGACCCAAATGTCAT
TTATGGAAAATGGAACGAGGGTTACAATTGCTATAAATGGTGACGGAGCT
GTGCTTTCTTTCAAGAAGACGACAAGGAATGTGAAGAAAGTTCTTCGGGG
AACACTTCTATTGACAATGCTGGACAATGGCTTGGGATTTAATCTGTCGA
GATTGTTGGGTGAAGATCTATACAGAGATGACTTCATGATTGTAAACGAA
GCACTTTCTATGAAGTACGGTGAAGAAGTGTTCGACTTTATCATTTCCAA
TTTGATGTCGGGAAAAATTGCAGTACACGTAAACTCTCCAGCAGCCTGTT
ATGTTCCAAAAACTAGCAAAAGATCAGGCGGGGTTGTCTTGACCACTCCT
TTGAGGGGAGAGTTCTGGCAGGACAAATCATTCGTTCTTACCCAACAGAA
TCTGTATTGGCTTCCTAAACAAGGATATAACTATTTCAAAGTACAGAGAA
AAGCGGTAGATGGTCTACTGACAATGGAGGAGGTTGAGGAAATAGACGGG
CAAGCTCTGTACAAATGCTCAGCAATTTTGGATACACCGGTCGTGTAA
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protein sequence of Gchil2803.t1

>Gchil2803.t1 ID=Gchil2803.t1|Name=Gchil2803.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=666bp
MEIAFIVAAIACSLGLGGASFQITRRSTQNGSKARSHDDDDAVSQEELCL
LQNKESSHSESAEIAGILRKLRKWISPADRARSQDLLHYSYGITEFQKLK
EEQKEYFNMLGSTKERVILSLCLSAEDNLESSQLTTRKKVPVRYGVELKD
ASLFSIACSCLNLNRPFVVQGFNGRKIDGLDLVQGDSWRYYTLSTIINSP
LGLSSLCQCGIDRPAEPSVDPKKDIIATIVFRLAWSISKYLPCPCGKDER
VSEEERFDMYCRAVFSVCQRLEDVFALMSRNFEHDLWESSWAGIKIRHSR
WDRRLNISGNNPSSFGRAMYMVSRMYNTFLLAAYSENEIEELMVPGLPQQ
ILSNESIEIVCARLTEARGAETSLDWLCYNKWNTSEVHCVPTHKLPVHTE
IKRAIRFMDSTGVEYLGDMALEELKPARIPFGKERLEWVAFSGGVSEGIP
MIRKPQFYTKHNIFCIGRPRVKDIPDVDATQMSFMENGTRVTIAINGDGA
VLSFKKTTRNVKKVLRGTLLLTMLDNGLGFNLSRLLGEDLYRDDFMIVNE
ALSMKYGEEVFDFIISNLMSGKIAVHVNSPAACYVPKTSKRSGGVVLTTP
LRGEFWQDKSFVLTQQNLYWLPKQGYNYFKVQRKAVDGLLTMEEVEEIDG
QALYKCSAILDTPVV*
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mRNA from alignment at tig00004406_pilon:584562..586559-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2803.t1 ID=Gchil2803.t1|Name=Gchil2803.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1998bp|location=Sequence derived from alignment at tig00004406_pilon:584562..586559- (Gracilaria chilensis NLEC103_M9 male)
ATGGAAATCGCATTCATCGTTGCTGCCATTGCTTGCTCTTTAGGATTGGG
AGGAGCTTCTTTCCAGATTACGCGACGATCAACTCAAAATGGCTCTAAAG
CTCGATCACATGATGATGATGATGCAGTAAGTCAAGAAGAACTTTGTCTT
CTCCAGAACAAAGAATCTTCCCATTCGGAGTCGGCAGAAATAGCTGGCAT
CTTGAGGAAGCTGAGAAAATGGATTTCTCCAGCTGATCGGGCACGATCTC
AGGACCTCCTTCACTACTCATATGGTATCACAGAATTCCAAAAACTGAAA
GAGGAGCAGAAGGAGTACTTCAATATGCTTGGTTCCACGAAGGAGCGTGT
TATTCTAAGTTTGTGCTTGTCGGCCGAAGACAATCTCGAAAGCTCGCAAC
TTACAACTCGAAAAAAAGTTCCCGTTCGATATGGCGTCGAACTTAAGGAT
GCTTCTCTGTTTAGTATAGCTTGCTCATGCCTCAATCTTAACCGTCCATT
TGTCGTCCAGGGTTTCAATGGAAGAAAGATTGATGGATTGGATTTGGTGC
AAGGGGATAGCTGGCGTTATTATACCTTGAGTACGATCATAAACAGTCCA
TTGGGTTTGTCCAGTTTATGCCAGTGTGGAATAGATCGTCCAGCAGAGCC
ATCCGTGGACCCAAAAAAAGACATCATCGCTACAATCGTTTTCAGGTTGG
CATGGTCGATATCGAAATACTTACCTTGCCCCTGCGGAAAGGATGAGAGA
GTGTCTGAAGAAGAAAGATTTGATATGTATTGCCGCGCTGTGTTCTCCGT
TTGTCAAAGACTGGAAGATGTTTTTGCCTTAATGTCAAGAAACTTCGAAC
ATGATTTATGGGAATCATCATGGGCTGGCATTAAAATCAGACACAGTCGT
TGGGATCGAAGGTTGAACATCTCAGGCAACAATCCTTCCAGCTTTGGCCG
AGCCATGTACATGGTTTCCAGAATGTACAACACTTTCTTATTAGCTGCCT
ACTCTGAGAACGAAATAGAGGAGCTAATGGTTCCTGGTCTCCCGCAACAG
ATTTTGAGCAACGAAAGCATTGAGATTGTTTGTGCAAGGCTCACAGAAGC
GCGTGGCGCGGAGACGAGTCTAGACTGGCTCTGCTACAACAAATGGAACA
CGAGTGAGGTCCATTGCGTGCCCACTCATAAGCTACCTGTACACACCGAA
ATCAAACGAGCGATCCGGTTCATGGACAGTACAGGTGTTGAATATCTCGG
AGACATGGCTTTAGAAGAGCTTAAACCAGCACGCATTCCGTTTGGAAAGG
AGCGCTTAGAGTGGGTGGCGTTTTCTGGAGGAGTATCTGAGGGAATTCCA
ATGATTAGAAAGCCGCAGTTCTACACGAAGCACAACATTTTTTGCATAGG
AAGACCCCGGGTCAAGGATATTCCAGATGTCGATGCGACCCAAATGTCAT
TTATGGAAAATGGAACGAGGGTTACAATTGCTATAAATGGTGACGGAGCT
GTGCTTTCTTTCAAGAAGACGACAAGGAATGTGAAGAAAGTTCTTCGGGG
AACACTTCTATTGACAATGCTGGACAATGGCTTGGGATTTAATCTGTCGA
GATTGTTGGGTGAAGATCTATACAGAGATGACTTCATGATTGTAAACGAA
GCACTTTCTATGAAGTACGGTGAAGAAGTGTTCGACTTTATCATTTCCAA
TTTGATGTCGGGAAAAATTGCAGTACACGTAAACTCTCCAGCAGCCTGTT
ATGTTCCAAAAACTAGCAAAAGATCAGGCGGGGTTGTCTTGACCACTCCT
TTGAGGGGAGAGTTCTGGCAGGACAAATCATTCGTTCTTACCCAACAGAA
TCTGTATTGGCTTCCTAAACAAGGATATAACTATTTCAAAGTACAGAGAA
AAGCGGTAGATGGTCTACTGACAATGGAGGAGGTTGAGGAAATAGACGGG
CAAGCTCTGTACAAATGCTCAGCAATTTTGGATACACCGGTCGTGTAA
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Coding sequence (CDS) from alignment at tig00004406_pilon:584562..586559-

>Gchil2803.t1 ID=Gchil2803.t1|Name=Gchil2803.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1998bp|location=Sequence derived from alignment at tig00004406_pilon:584562..586559- (Gracilaria chilensis NLEC103_M9 male)
ATGGAAATCGCATTCATCGTTGCTGCCATTGCTTGCTCTTTAGGATTGGG
AGGAGCTTCTTTCCAGATTACGCGACGATCAACTCAAAATGGCTCTAAAG
CTCGATCACATGATGATGATGATGCAGTAAGTCAAGAAGAACTTTGTCTT
CTCCAGAACAAAGAATCTTCCCATTCGGAGTCGGCAGAAATAGCTGGCAT
CTTGAGGAAGCTGAGAAAATGGATTTCTCCAGCTGATCGGGCACGATCTC
AGGACCTCCTTCACTACTCATATGGTATCACAGAATTCCAAAAACTGAAA
GAGGAGCAGAAGGAGTACTTCAATATGCTTGGTTCCACGAAGGAGCGTGT
TATTCTAAGTTTGTGCTTGTCGGCCGAAGACAATCTCGAAAGCTCGCAAC
TTACAACTCGAAAAAAAGTTCCCGTTCGATATGGCGTCGAACTTAAGGAT
GCTTCTCTGTTTAGTATAGCTTGCTCATGCCTCAATCTTAACCGTCCATT
TGTCGTCCAGGGTTTCAATGGAAGAAAGATTGATGGATTGGATTTGGTGC
AAGGGGATAGCTGGCGTTATTATACCTTGAGTACGATCATAAACAGTCCA
TTGGGTTTGTCCAGTTTATGCCAGTGTGGAATAGATCGTCCAGCAGAGCC
ATCCGTGGACCCAAAAAAAGACATCATCGCTACAATCGTTTTCAGGTTGG
CATGGTCGATATCGAAATACTTACCTTGCCCCTGCGGAAAGGATGAGAGA
GTGTCTGAAGAAGAAAGATTTGATATGTATTGCCGCGCTGTGTTCTCCGT
TTGTCAAAGACTGGAAGATGTTTTTGCCTTAATGTCAAGAAACTTCGAAC
ATGATTTATGGGAATCATCATGGGCTGGCATTAAAATCAGACACAGTCGT
TGGGATCGAAGGTTGAACATCTCAGGCAACAATCCTTCCAGCTTTGGCCG
AGCCATGTACATGGTTTCCAGAATGTACAACACTTTCTTATTAGCTGCCT
ACTCTGAGAACGAAATAGAGGAGCTAATGGTTCCTGGTCTCCCGCAACAG
ATTTTGAGCAACGAAAGCATTGAGATTGTTTGTGCAAGGCTCACAGAAGC
GCGTGGCGCGGAGACGAGTCTAGACTGGCTCTGCTACAACAAATGGAACA
CGAGTGAGGTCCATTGCGTGCCCACTCATAAGCTACCTGTACACACCGAA
ATCAAACGAGCGATCCGGTTCATGGACAGTACAGGTGTTGAATATCTCGG
AGACATGGCTTTAGAAGAGCTTAAACCAGCACGCATTCCGTTTGGAAAGG
AGCGCTTAGAGTGGGTGGCGTTTTCTGGAGGAGTATCTGAGGGAATTCCA
ATGATTAGAAAGCCGCAGTTCTACACGAAGCACAACATTTTTTGCATAGG
AAGACCCCGGGTCAAGGATATTCCAGATGTCGATGCGACCCAAATGTCAT
TTATGGAAAATGGAACGAGGGTTACAATTGCTATAAATGGTGACGGAGCT
GTGCTTTCTTTCAAGAAGACGACAAGGAATGTGAAGAAAGTTCTTCGGGG
AACACTTCTATTGACAATGCTGGACAATGGCTTGGGATTTAATCTGTCGA
GATTGTTGGGTGAAGATCTATACAGAGATGACTTCATGATTGTAAACGAA
GCACTTTCTATGAAGTACGGTGAAGAAGTGTTCGACTTTATCATTTCCAA
TTTGATGTCGGGAAAAATTGCAGTACACGTAAACTCTCCAGCAGCCTGTT
ATGTTCCAAAAACTAGCAAAAGATCAGGCGGGGTTGTCTTGACCACTCCT
TTGAGGGGAGAGTTCTGGCAGGACAAATCATTCGTTCTTACCCAACAGAA
TCTGTATTGGCTTCCTAAACAAGGATATAACTATTTCAAAGTACAGAGAA
AAGCGGTAGATGGTCTACTGACAATGGAGGAGGTTGAGGAAATAGACGGG
CAAGCTCTGTACAAATGCTCAGCAATTTTGGATACACCGGTCGTGTAA
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