Gchil2801.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2801.t1
Unique Name	Gchil2801.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	566

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004406_pilon	contig	tig00004406_pilon:581356..583053 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706345.1
PFAMs	AA_permease_2,AA_permease_C
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K03294,ko:K13864
KEGG TC	2.A.3.2,2.A.3.3.2
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0016020,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0042170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0098588,GO:0098805
Evalue	4.63e-128
EggNOG OGs	COG0531@1\|root,KOG1286@2759\|Eukaryota
Description	amino acid transport
COG category	E
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2801	Gchil2801	Gracilaria chilensis NLEC103_M9 male	gene	tig00004406_pilon 581356..583053 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2801.t1.start1	Gchil2801.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004406_pilon 581356..581358 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2801.t1.CDS1	Gchil2801.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004406_pilon 581356..583053 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2801.t1.exon1	Gchil2801.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004406_pilon 581356..583053 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2801.t1.stop1	Gchil2801.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004406_pilon 583051..583053 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2801.t1	Gchil2801.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004406_pilon 581356..583053 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004406_pilon:581356..583053+
coding sequence from alignment at tig00004406_pilon:581356..583053+

mRNA sequence

>Gchil2801.t1 ID=Gchil2801.t1|Name=Gchil2801.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=566bp
MTASKYLTAALRRKHAAHRMHLPTPDATEKTLHLHDLVLFGIGGALGSGL
FLLTGRAARNLAGPGVTISFAIAAVACLFSALSYAEMSSRLPNSGGAYSF
SYVGLGELPAFLVGMCLTLEYGVSAAAIARSWASYLSDALPILPSWTTGV
KSQFSLLAFLLVAALTLLLSMGLKEAKWVINASTILYAIVVFIIVGFGAQ
NVDTDNWHPFLPFGVKGVITASSAIFFAYVGFDEVATVAEEAIDASKTVP
LAIVLSMVAVTTMYIASSLILTGLVNYADLDMDAPFSVAFRAAGLPFIAR
LVAIGTSLGMMNTAMVSMAAQPRIFLSMGRDGLLPRSFAHSTRLGTLLCG
ACVAVLALVFETQALADVVSGGTLLAFLATNLTLLLTRSRLHSSNSDSMR
TSTLIYCFVLGSAVCGLGTKLVVAKIIPVWVMFVIPIPTCVVPGFLLFKS
EFEGGEEVEGSPPSFLCPFVPAIPLLGSFTTCFLLFQLSRKALTALCSWL
MFSTIAYFAYGARNSVMGNEYLTLSDPSGNDSYNSFDDFAEANSVASDSQ
SDEDTSPSRREVVQP*

spliced messenger RNA

>Gchil2801.t1 ID=Gchil2801.t1|Name=Gchil2801.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1698bp|location=Sequence derived from alignment at tig00004406_pilon:581356..583053+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGCCTCCAAGTACTTGACCGCCGCGCTGCGAAGAAAGCATGCCGC
GCACCGCATGCATCTGCCAACCCCGGATGCCACAGAAAAAACGCTTCATC
TCCACGATCTCGTTCTGTTTGGCATCGGCGGCGCGCTTGGAAGCGGTCTC
TTCCTTCTCACTGGCCGCGCTGCGCGCAATTTGGCTGGACCGGGTGTCAC
TATATCCTTCGCAATTGCTGCTGTGGCCTGCTTGTTTTCAGCCTTGTCGT
ATGCGGAGATGTCGTCCCGCCTGCCGAACAGTGGAGGGGCCTACTCGTTT
TCCTACGTAGGTCTTGGCGAGTTGCCGGCATTTTTGGTTGGCATGTGCCT
CACTTTGGAGTATGGCGTCAGTGCGGCCGCTATAGCTCGTTCGTGGGCGT
CCTATCTCTCTGATGCTCTCCCGATTCTTCCTAGCTGGACCACTGGAGTC
AAGTCGCAATTCTCCCTTCTTGCCTTTCTGCTGGTTGCAGCTTTAACCTT
GTTGCTTTCCATGGGGCTCAAAGAAGCCAAATGGGTCATTAACGCCTCCA
CTATACTCTATGCCATAGTCGTATTCATCATCGTTGGCTTCGGAGCTCAG
AACGTTGATACAGACAATTGGCATCCATTTCTTCCATTTGGTGTTAAAGG
CGTTATCACTGCGTCCAGTGCTATATTTTTCGCCTACGTGGGCTTTGACG
AGGTGGCTACTGTTGCGGAGGAAGCCATCGATGCCTCCAAAACAGTCCCG
CTTGCTATTGTTCTATCAATGGTTGCTGTCACCACCATGTATATTGCTTC
GTCACTCATTCTTACAGGACTCGTCAACTACGCCGATCTAGATATGGATG
CTCCATTTTCCGTTGCGTTTCGTGCTGCGGGGCTGCCGTTCATCGCGCGT
CTAGTTGCAATCGGTACTTCGTTAGGAATGATGAATACAGCCATGGTTAG
CATGGCTGCACAACCGCGAATCTTCCTGTCGATGGGGCGGGATGGACTAT
TGCCACGCTCGTTCGCACACAGTACTCGATTGGGTACCTTGCTTTGCGGT
GCTTGTGTTGCTGTGCTTGCTCTTGTTTTTGAAACTCAGGCGCTTGCGGA
TGTTGTTTCTGGTGGGACGCTACTTGCGTTCTTGGCCACCAACTTAACGT
TGCTGCTTACAAGAAGCCGGTTGCATTCTTCTAATTCCGATTCTATGCGT
ACATCAACACTTATTTACTGTTTTGTGCTGGGAAGTGCAGTCTGTGGTTT
GGGTACCAAACTGGTTGTTGCCAAGATTATCCCCGTTTGGGTTATGTTTG
TCATACCTATTCCAACGTGCGTCGTACCGGGTTTTCTCCTTTTCAAGTCT
GAATTTGAAGGAGGTGAAGAGGTCGAAGGATCACCACCATCGTTCCTTTG
CCCTTTTGTACCTGCCATACCGTTGCTTGGTTCTTTTACGACGTGTTTTT
TGTTGTTTCAGTTATCACGAAAGGCGCTCACCGCTCTCTGTTCATGGCTT
ATGTTTTCGACAATCGCTTACTTTGCTTATGGCGCTCGAAATTCGGTGAT
GGGCAACGAGTACTTGACGTTGAGTGATCCTTCTGGGAATGATTCATATA
ATTCTTTTGATGACTTTGCTGAAGCAAATTCAGTCGCTAGTGATTCTCAG
TCTGATGAAGATACATCTCCATCACGTCGAGAAGTAGTGCAGCCCTAG

protein sequence of Gchil2801.t1

>Gchil2801.t1 ID=Gchil2801.t1|Name=Gchil2801.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=566bp
MTASKYLTAALRRKHAAHRMHLPTPDATEKTLHLHDLVLFGIGGALGSGL
FLLTGRAARNLAGPGVTISFAIAAVACLFSALSYAEMSSRLPNSGGAYSF
SYVGLGELPAFLVGMCLTLEYGVSAAAIARSWASYLSDALPILPSWTTGV
KSQFSLLAFLLVAALTLLLSMGLKEAKWVINASTILYAIVVFIIVGFGAQ
NVDTDNWHPFLPFGVKGVITASSAIFFAYVGFDEVATVAEEAIDASKTVP
LAIVLSMVAVTTMYIASSLILTGLVNYADLDMDAPFSVAFRAAGLPFIAR
LVAIGTSLGMMNTAMVSMAAQPRIFLSMGRDGLLPRSFAHSTRLGTLLCG
ACVAVLALVFETQALADVVSGGTLLAFLATNLTLLLTRSRLHSSNSDSMR
TSTLIYCFVLGSAVCGLGTKLVVAKIIPVWVMFVIPIPTCVVPGFLLFKS
EFEGGEEVEGSPPSFLCPFVPAIPLLGSFTTCFLLFQLSRKALTALCSWL
MFSTIAYFAYGARNSVMGNEYLTLSDPSGNDSYNSFDDFAEANSVASDSQ
SDEDTSPSRREVVQP*

mRNA from alignment at tig00004406_pilon:581356..583053+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2801.t1 ID=Gchil2801.t1|Name=Gchil2801.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1698bp|location=Sequence derived from alignment at tig00004406_pilon:581356..583053+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCGCCTCCAAGTACTTGACCGCCGCGCTGCGAAGAAAGCATGCCGC
GCACCGCATGCATCTGCCAACCCCGGATGCCACAGAAAAAACGCTTCATC
TCCACGATCTCGTTCTGTTTGGCATCGGCGGCGCGCTTGGAAGCGGTCTC
TTCCTTCTCACTGGCCGCGCTGCGCGCAATTTGGCTGGACCGGGTGTCAC
TATATCCTTCGCAATTGCTGCTGTGGCCTGCTTGTTTTCAGCCTTGTCGT
ATGCGGAGATGTCGTCCCGCCTGCCGAACAGTGGAGGGGCCTACTCGTTT
TCCTACGTAGGTCTTGGCGAGTTGCCGGCATTTTTGGTTGGCATGTGCCT
CACTTTGGAGTATGGCGTCAGTGCGGCCGCTATAGCTCGTTCGTGGGCGT
CCTATCTCTCTGATGCTCTCCCGATTCTTCCTAGCTGGACCACTGGAGTC
AAGTCGCAATTCTCCCTTCTTGCCTTTCTGCTGGTTGCAGCTTTAACCTT
GTTGCTTTCCATGGGGCTCAAAGAAGCCAAATGGGTCATTAACGCCTCCA
CTATACTCTATGCCATAGTCGTATTCATCATCGTTGGCTTCGGAGCTCAG
AACGTTGATACAGACAATTGGCATCCATTTCTTCCATTTGGTGTTAAAGG
CGTTATCACTGCGTCCAGTGCTATATTTTTCGCCTACGTGGGCTTTGACG
AGGTGGCTACTGTTGCGGAGGAAGCCATCGATGCCTCCAAAACAGTCCCG
CTTGCTATTGTTCTATCAATGGTTGCTGTCACCACCATGTATATTGCTTC
GTCACTCATTCTTACAGGACTCGTCAACTACGCCGATCTAGATATGGATG
CTCCATTTTCCGTTGCGTTTCGTGCTGCGGGGCTGCCGTTCATCGCGCGT
CTAGTTGCAATCGGTACTTCGTTAGGAATGATGAATACAGCCATGGTTAG
CATGGCTGCACAACCGCGAATCTTCCTGTCGATGGGGCGGGATGGACTAT
TGCCACGCTCGTTCGCACACAGTACTCGATTGGGTACCTTGCTTTGCGGT
GCTTGTGTTGCTGTGCTTGCTCTTGTTTTTGAAACTCAGGCGCTTGCGGA
TGTTGTTTCTGGTGGGACGCTACTTGCGTTCTTGGCCACCAACTTAACGT
TGCTGCTTACAAGAAGCCGGTTGCATTCTTCTAATTCCGATTCTATGCGT
ACATCAACACTTATTTACTGTTTTGTGCTGGGAAGTGCAGTCTGTGGTTT
GGGTACCAAACTGGTTGTTGCCAAGATTATCCCCGTTTGGGTTATGTTTG
TCATACCTATTCCAACGTGCGTCGTACCGGGTTTTCTCCTTTTCAAGTCT
GAATTTGAAGGAGGTGAAGAGGTCGAAGGATCACCACCATCGTTCCTTTG
CCCTTTTGTACCTGCCATACCGTTGCTTGGTTCTTTTACGACGTGTTTTT
TGTTGTTTCAGTTATCACGAAAGGCGCTCACCGCTCTCTGTTCATGGCTT
ATGTTTTCGACAATCGCTTACTTTGCTTATGGCGCTCGAAATTCGGTGAT
GGGCAACGAGTACTTGACGTTGAGTGATCCTTCTGGGAATGATTCATATA
ATTCTTTTGATGACTTTGCTGAAGCAAATTCAGTCGCTAGTGATTCTCAG
TCTGATGAAGATACATCTCCATCACGTCGAGAAGTAGTGCAGCCCTAG

Coding sequence (CDS) from alignment at tig00004406_pilon:581356..583053+

>Gchil2801.t1 ID=Gchil2801.t1|Name=Gchil2801.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1698bp|location=Sequence derived from alignment at tig00004406_pilon:581356..583053+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCGCCTCCAAGTACTTGACCGCCGCGCTGCGAAGAAAGCATGCCGC
GCACCGCATGCATCTGCCAACCCCGGATGCCACAGAAAAAACGCTTCATC
TCCACGATCTCGTTCTGTTTGGCATCGGCGGCGCGCTTGGAAGCGGTCTC
TTCCTTCTCACTGGCCGCGCTGCGCGCAATTTGGCTGGACCGGGTGTCAC
TATATCCTTCGCAATTGCTGCTGTGGCCTGCTTGTTTTCAGCCTTGTCGT
ATGCGGAGATGTCGTCCCGCCTGCCGAACAGTGGAGGGGCCTACTCGTTT
TCCTACGTAGGTCTTGGCGAGTTGCCGGCATTTTTGGTTGGCATGTGCCT
CACTTTGGAGTATGGCGTCAGTGCGGCCGCTATAGCTCGTTCGTGGGCGT
CCTATCTCTCTGATGCTCTCCCGATTCTTCCTAGCTGGACCACTGGAGTC
AAGTCGCAATTCTCCCTTCTTGCCTTTCTGCTGGTTGCAGCTTTAACCTT
GTTGCTTTCCATGGGGCTCAAAGAAGCCAAATGGGTCATTAACGCCTCCA
CTATACTCTATGCCATAGTCGTATTCATCATCGTTGGCTTCGGAGCTCAG
AACGTTGATACAGACAATTGGCATCCATTTCTTCCATTTGGTGTTAAAGG
CGTTATCACTGCGTCCAGTGCTATATTTTTCGCCTACGTGGGCTTTGACG
AGGTGGCTACTGTTGCGGAGGAAGCCATCGATGCCTCCAAAACAGTCCCG
CTTGCTATTGTTCTATCAATGGTTGCTGTCACCACCATGTATATTGCTTC
GTCACTCATTCTTACAGGACTCGTCAACTACGCCGATCTAGATATGGATG
CTCCATTTTCCGTTGCGTTTCGTGCTGCGGGGCTGCCGTTCATCGCGCGT
CTAGTTGCAATCGGTACTTCGTTAGGAATGATGAATACAGCCATGGTTAG
CATGGCTGCACAACCGCGAATCTTCCTGTCGATGGGGCGGGATGGACTAT
TGCCACGCTCGTTCGCACACAGTACTCGATTGGGTACCTTGCTTTGCGGT
GCTTGTGTTGCTGTGCTTGCTCTTGTTTTTGAAACTCAGGCGCTTGCGGA
TGTTGTTTCTGGTGGGACGCTACTTGCGTTCTTGGCCACCAACTTAACGT
TGCTGCTTACAAGAAGCCGGTTGCATTCTTCTAATTCCGATTCTATGCGT
ACATCAACACTTATTTACTGTTTTGTGCTGGGAAGTGCAGTCTGTGGTTT
GGGTACCAAACTGGTTGTTGCCAAGATTATCCCCGTTTGGGTTATGTTTG
TCATACCTATTCCAACGTGCGTCGTACCGGGTTTTCTCCTTTTCAAGTCT
GAATTTGAAGGAGGTGAAGAGGTCGAAGGATCACCACCATCGTTCCTTTG
CCCTTTTGTACCTGCCATACCGTTGCTTGGTTCTTTTACGACGTGTTTTT
TGTTGTTTCAGTTATCACGAAAGGCGCTCACCGCTCTCTGTTCATGGCTT
ATGTTTTCGACAATCGCTTACTTTGCTTATGGCGCTCGAAATTCGGTGAT
GGGCAACGAGTACTTGACGTTGAGTGATCCTTCTGGGAATGATTCATATA
ATTCTTTTGATGACTTTGCTGAAGCAAATTCAGTCGCTAGTGATTCTCAG
TCTGATGAAGATACATCTCCATCACGTCGAGAAGTAGTGCAGCCCTAG