Gchil2796.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2796.t1
Unique NameGchil2796.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length241
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004406_piloncontigtig00004406_pilon:526733..527455 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705797.1
PFAMsperoxidase
Max annot lvl2759|Eukaryota
KEGG rclassRC00092
KEGG koko:K00434
KEGG ReactionR00644
KEGG Pathwayko00053,ko00480,map00053,map00480
Evalue6.25e-100
EggNOG OGsCOG0685@1|root,2QR1E@2759|Eukaryota
EC1.11.1.11
Descriptioncytochrome-c peroxidase activity
COG categoryE
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2796Gchil2796Gracilaria chilensis NLEC103_M9 malegenetig00004406_pilon 526733..527455 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2796.t1.start1Gchil2796.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004406_pilon 526733..526735 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2796.t1.CDS1Gchil2796.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 526733..527455 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2796.t1.exon1Gchil2796.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 526733..527455 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2796.t1.stop1Gchil2796.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004406_pilon 527453..527455 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2796.t1Gchil2796.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004406_pilon 526733..527455 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2796.t1 ID=Gchil2796.t1|Name=Gchil2796.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=241bp
MDPAEAKARQMLTELFQHNPCMPIMVRLAWHDAGSYSKEDGTGGANATIR
FSPEADLPANKGLHIARDLLQPIKDAVPSMSHADLYQLASVVAVQFAGGP
SIPFRLGRKDKLAPDCSPDGRLPDANKRMPHLRDIFYRMGFNDKEIVLLS
GAHCLGRCHAERSGFDGPWTAEPLKFDNSYYTQTLSENPDPKLLRLASDL
ALLDEPYTKQLCASYAADQDLFFREYVPVHQKLSELGCKF*
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spliced messenger RNA

>Gchil2796.t1 ID=Gchil2796.t1|Name=Gchil2796.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=723bp|location=Sequence derived from alignment at tig00004406_pilon:526733..527455+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCCCGCCGAAGCAAAGGCGCGCCAGATGCTCACCGAGCTGTTCCA
GCATAACCCGTGCATGCCCATCATGGTGCGCCTCGCCTGGCACGACGCCG
GCAGCTACTCCAAGGAAGATGGCACCGGCGGCGCCAACGCCACCATCCGC
TTCTCGCCCGAGGCCGACCTGCCCGCCAACAAGGGGCTTCACATCGCCCG
CGACCTTTTACAACCCATCAAGGACGCCGTACCCTCCATGTCCCACGCCG
ATCTCTACCAGCTCGCCTCCGTTGTCGCCGTCCAGTTCGCCGGCGGTCCC
TCCATCCCGTTCCGTCTGGGCCGCAAGGACAAGCTCGCCCCCGACTGTTC
CCCGGACGGCCGTCTGCCCGACGCCAACAAGCGCATGCCGCATCTCAGGG
ATATCTTTTACCGCATGGGCTTTAACGACAAGGAGATCGTCCTGCTCAGC
GGTGCCCATTGTCTGGGCCGCTGCCATGCAGAACGATCTGGCTTTGACGG
CCCTTGGACCGCCGAGCCGCTCAAGTTTGACAACTCCTATTACACGCAAA
CTCTCAGCGAAAACCCCGACCCCAAGCTGCTCCGTCTCGCTTCCGACCTC
GCCCTTCTGGACGAGCCCTACACCAAGCAGTTGTGCGCGTCCTACGCTGC
CGATCAGGATCTCTTCTTCCGCGAGTACGTCCCGGTCCACCAGAAGCTCA
GCGAGCTTGGCTGCAAATTTTGA
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protein sequence of Gchil2796.t1

>Gchil2796.t1 ID=Gchil2796.t1|Name=Gchil2796.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=241bp
MDPAEAKARQMLTELFQHNPCMPIMVRLAWHDAGSYSKEDGTGGANATIR
FSPEADLPANKGLHIARDLLQPIKDAVPSMSHADLYQLASVVAVQFAGGP
SIPFRLGRKDKLAPDCSPDGRLPDANKRMPHLRDIFYRMGFNDKEIVLLS
GAHCLGRCHAERSGFDGPWTAEPLKFDNSYYTQTLSENPDPKLLRLASDL
ALLDEPYTKQLCASYAADQDLFFREYVPVHQKLSELGCKF*
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mRNA from alignment at tig00004406_pilon:526733..527455+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2796.t1 ID=Gchil2796.t1|Name=Gchil2796.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=723bp|location=Sequence derived from alignment at tig00004406_pilon:526733..527455+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATCCCGCCGAAGCAAAGGCGCGCCAGATGCTCACCGAGCTGTTCCA
GCATAACCCGTGCATGCCCATCATGGTGCGCCTCGCCTGGCACGACGCCG
GCAGCTACTCCAAGGAAGATGGCACCGGCGGCGCCAACGCCACCATCCGC
TTCTCGCCCGAGGCCGACCTGCCCGCCAACAAGGGGCTTCACATCGCCCG
CGACCTTTTACAACCCATCAAGGACGCCGTACCCTCCATGTCCCACGCCG
ATCTCTACCAGCTCGCCTCCGTTGTCGCCGTCCAGTTCGCCGGCGGTCCC
TCCATCCCGTTCCGTCTGGGCCGCAAGGACAAGCTCGCCCCCGACTGTTC
CCCGGACGGCCGTCTGCCCGACGCCAACAAGCGCATGCCGCATCTCAGGG
ATATCTTTTACCGCATGGGCTTTAACGACAAGGAGATCGTCCTGCTCAGC
GGTGCCCATTGTCTGGGCCGCTGCCATGCAGAACGATCTGGCTTTGACGG
CCCTTGGACCGCCGAGCCGCTCAAGTTTGACAACTCCTATTACACGCAAA
CTCTCAGCGAAAACCCCGACCCCAAGCTGCTCCGTCTCGCTTCCGACCTC
GCCCTTCTGGACGAGCCCTACACCAAGCAGTTGTGCGCGTCCTACGCTGC
CGATCAGGATCTCTTCTTCCGCGAGTACGTCCCGGTCCACCAGAAGCTCA
GCGAGCTTGGCTGCAAATTTTGA
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Coding sequence (CDS) from alignment at tig00004406_pilon:526733..527455+

>Gchil2796.t1 ID=Gchil2796.t1|Name=Gchil2796.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=723bp|location=Sequence derived from alignment at tig00004406_pilon:526733..527455+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATCCCGCCGAAGCAAAGGCGCGCCAGATGCTCACCGAGCTGTTCCA
GCATAACCCGTGCATGCCCATCATGGTGCGCCTCGCCTGGCACGACGCCG
GCAGCTACTCCAAGGAAGATGGCACCGGCGGCGCCAACGCCACCATCCGC
TTCTCGCCCGAGGCCGACCTGCCCGCCAACAAGGGGCTTCACATCGCCCG
CGACCTTTTACAACCCATCAAGGACGCCGTACCCTCCATGTCCCACGCCG
ATCTCTACCAGCTCGCCTCCGTTGTCGCCGTCCAGTTCGCCGGCGGTCCC
TCCATCCCGTTCCGTCTGGGCCGCAAGGACAAGCTCGCCCCCGACTGTTC
CCCGGACGGCCGTCTGCCCGACGCCAACAAGCGCATGCCGCATCTCAGGG
ATATCTTTTACCGCATGGGCTTTAACGACAAGGAGATCGTCCTGCTCAGC
GGTGCCCATTGTCTGGGCCGCTGCCATGCAGAACGATCTGGCTTTGACGG
CCCTTGGACCGCCGAGCCGCTCAAGTTTGACAACTCCTATTACACGCAAA
CTCTCAGCGAAAACCCCGACCCCAAGCTGCTCCGTCTCGCTTCCGACCTC
GCCCTTCTGGACGAGCCCTACACCAAGCAGTTGTGCGCGTCCTACGCTGC
CGATCAGGATCTCTTCTTCCGCGAGTACGTCCCGGTCCACCAGAAGCTCA
GCGAGCTTGGCTGCAAATTTTGA
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