Gchil2795.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2795.t1
Unique Name	Gchil2795.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	705

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004406_pilon	contig	tig00004406_pilon:524041..526155 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708864.1
Preferred name	ITFG1
PFAMs	VCBS
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K00671,ko:K17257
GOs	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0016324,GO:0016328,GO:0044425,GO:0044459,GO:0044464,GO:0045177,GO:0071944,GO:0098590
Evalue	6.96e-44
EggNOG OGs	KOG4550@1\|root,KOG4550@2759\|Eukaryota
EC	2.3.1.97
Description	protein kinase activity
COG category	T
BRITE	ko00000,ko01000,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2795	Gchil2795	Gracilaria chilensis NLEC103_M9 male	gene	tig00004406_pilon 524041..526155 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2795.t1.stop1	Gchil2795.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004406_pilon 524041..524043 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2795.t1.CDS1	Gchil2795.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004406_pilon 524041..526155 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2795.t1.exon1	Gchil2795.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004406_pilon 524041..526155 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2795.t1.start1	Gchil2795.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004406_pilon 526153..526155 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2795.t1	Gchil2795.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004406_pilon 524041..526155 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004406_pilon:524041..526155-
coding sequence from alignment at tig00004406_pilon:524041..526155-

mRNA sequence

>Gchil2795.t1 ID=Gchil2795.t1|Name=Gchil2795.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=705bp
MATAMGAAVTAATTTDPMMASRRAPLPVLLLLLLLLLLLPCQPRAITMPR
AHGSRSAPPAAQTPFSDQSAYVGLSSSGALLATGDFNNDRFADLLMLDAK
SLRKVSVMQWQHHSFSFRHVGRALDVRQLHLPRAFGRVSAAYVADFGNDG
RMDVLLLDGTQGVIVFGDARANFNASKPALLPEVPRVTAVVDADGDLVPE
LFVAFDNGTRGFYKYHRDISVQRDRFDQRGSVRFHRWDAHSTCEDGTTAR
VASAQSVAFADMDGDCQPDLVLGTTCSLEVWLSGARSHTPLWQLLANGSH
ARVFNRSLFDHDGGDHALVAADLDADGAMDIGVANRKRGDLRVHLNRQPW
RAPGVLCSATDDWQLQTVQALGANELTLREQRLGSLFGAISVPPALRVGD
MDLDGWPDVLTVDAATALPVVFRNQRKWARDERDGSGSRGGDNDRDDDED
DMPLRRVDARTLRALQHGNGGTVAAGWLDTDENGRQDVVVVRANETRLMW
NGGGGGGQRLFFKGTVLSALGFRLQPRPFAPVVGNTVKLSYAERGASWRR
RRRRRICSQGGGSGGAWTLAGSGCVFGLGAIANYVEELSVGGGGGSRSWT
NLMPNSMAVVWAEGGGGGGGGGGGDADADADAHLDVEWNGDDGGAAWWME
YFTQRRDGPMLRVVGALLGALCALALAIGALHRAERKRDRVLAARERERL
WGFA*

spliced messenger RNA

>Gchil2795.t1 ID=Gchil2795.t1|Name=Gchil2795.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2115bp|location=Sequence derived from alignment at tig00004406_pilon:524041..526155- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGACCGCGATGGGCGCCGCCGTCACCGCCGCCACCACCACGGACCC
GATGATGGCGTCGCGTCGCGCCCCGCTGCCTGTGCTGCTGCTGCTGCTGC
TGCTGCTGCTTCTTCTACCGTGCCAGCCGCGCGCCATCACCATGCCGCGT
GCGCACGGTTCGCGCAGCGCGCCGCCCGCCGCGCAGACGCCCTTCTCCGA
CCAGTCGGCCTACGTGGGGCTGTCTTCGTCCGGCGCGCTGCTGGCCACGG
GCGACTTCAACAACGACCGCTTCGCAGACCTGCTCATGCTGGACGCCAAG
TCGCTGCGCAAGGTGTCCGTCATGCAGTGGCAGCACCACAGCTTCTCGTT
CCGTCACGTGGGGCGCGCGTTGGATGTGCGTCAGTTGCACTTGCCGCGCG
CGTTTGGCCGCGTTTCGGCGGCGTATGTGGCTGACTTTGGCAACGACGGC
CGCATGGACGTGTTGCTGTTGGACGGCACGCAGGGCGTGATTGTGTTTGG
TGATGCGCGCGCCAACTTCAACGCCAGCAAGCCTGCGCTGCTGCCGGAGG
TGCCGCGCGTGACGGCCGTCGTGGACGCCGACGGCGACCTGGTACCGGAG
TTGTTTGTGGCGTTTGACAACGGCACGCGCGGCTTCTACAAGTACCACCG
CGACATCAGCGTGCAACGCGATCGCTTCGACCAGCGCGGAAGTGTGCGTT
TCCACCGTTGGGACGCGCATAGCACGTGCGAAGACGGCACGACGGCGCGC
GTGGCGAGCGCGCAGTCGGTGGCGTTCGCCGACATGGACGGCGACTGCCA
GCCCGACCTGGTGCTGGGCACCACCTGCTCGCTGGAGGTGTGGCTCAGCG
GCGCGCGCTCGCACACGCCACTATGGCAGCTTCTCGCCAACGGCTCCCAC
GCGCGCGTCTTCAACCGCTCGCTGTTCGACCACGACGGCGGCGACCATGC
ATTGGTGGCGGCCGATCTGGACGCCGACGGCGCCATGGACATTGGCGTGG
CAAATCGCAAGCGCGGCGACCTTCGCGTGCATCTTAATCGTCAGCCGTGG
CGCGCGCCCGGGGTGTTGTGCTCGGCCACAGATGACTGGCAGCTGCAGAC
GGTGCAAGCGTTGGGAGCCAACGAGCTGACGTTGCGCGAACAGCGACTGG
GTTCGCTGTTCGGGGCCATCTCCGTGCCGCCCGCGCTGCGCGTCGGCGAC
ATGGACCTGGACGGCTGGCCCGACGTGCTGACGGTCGACGCGGCCACCGC
GCTGCCCGTGGTGTTTCGCAACCAACGCAAATGGGCGCGCGACGAGCGCG
ATGGCAGCGGCAGCCGTGGCGGTGACAACGACAGAGATGACGACGAAGAT
GACATGCCGCTGCGACGCGTGGATGCACGCACGCTACGCGCGCTGCAACA
CGGCAACGGCGGAACGGTGGCGGCCGGATGGCTGGACACGGACGAAAACG
GACGACAGGACGTGGTGGTGGTGCGCGCCAACGAGACGCGCCTCATGTGG
AACGGCGGCGGCGGCGGCGGCCAACGGCTGTTCTTCAAGGGCACGGTGCT
GAGCGCGTTGGGGTTCCGACTGCAGCCGAGGCCTTTTGCGCCCGTCGTGG
GCAATACGGTCAAACTGAGCTACGCGGAGCGCGGGGCGTCGTGGCGACGG
CGACGAAGGCGGCGCATTTGCAGCCAGGGCGGCGGCAGCGGCGGCGCGTG
GACGCTCGCCGGCAGCGGGTGCGTGTTCGGGCTGGGCGCCATCGCCAACT
ACGTGGAGGAGCTCAGCGTGGGCGGCGGCGGCGGCTCGCGGTCGTGGACC
AACCTCATGCCCAACTCGATGGCCGTGGTGTGGGCCGAAGGCGGCGGCGG
CGGCGGCGGCGGCGGGGGAGGGGACGCAGACGCAGACGCGGACGCGCACT
TGGATGTGGAGTGGAACGGTGACGACGGCGGGGCGGCATGGTGGATGGAG
TACTTCACGCAGCGGCGCGACGGCCCCATGCTGCGCGTGGTGGGCGCGCT
GTTGGGCGCGCTATGCGCGCTGGCGCTGGCCATCGGCGCGCTCCACCGCG
CCGAACGCAAGCGCGACCGCGTGCTGGCCGCGCGCGAGCGCGAGCGTCTC
TGGGGCTTCGCGTGA

protein sequence of Gchil2795.t1

>Gchil2795.t1 ID=Gchil2795.t1|Name=Gchil2795.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=705bp
MATAMGAAVTAATTTDPMMASRRAPLPVLLLLLLLLLLLPCQPRAITMPR
AHGSRSAPPAAQTPFSDQSAYVGLSSSGALLATGDFNNDRFADLLMLDAK
SLRKVSVMQWQHHSFSFRHVGRALDVRQLHLPRAFGRVSAAYVADFGNDG
RMDVLLLDGTQGVIVFGDARANFNASKPALLPEVPRVTAVVDADGDLVPE
LFVAFDNGTRGFYKYHRDISVQRDRFDQRGSVRFHRWDAHSTCEDGTTAR
VASAQSVAFADMDGDCQPDLVLGTTCSLEVWLSGARSHTPLWQLLANGSH
ARVFNRSLFDHDGGDHALVAADLDADGAMDIGVANRKRGDLRVHLNRQPW
RAPGVLCSATDDWQLQTVQALGANELTLREQRLGSLFGAISVPPALRVGD
MDLDGWPDVLTVDAATALPVVFRNQRKWARDERDGSGSRGGDNDRDDDED
DMPLRRVDARTLRALQHGNGGTVAAGWLDTDENGRQDVVVVRANETRLMW
NGGGGGGQRLFFKGTVLSALGFRLQPRPFAPVVGNTVKLSYAERGASWRR
RRRRRICSQGGGSGGAWTLAGSGCVFGLGAIANYVEELSVGGGGGSRSWT
NLMPNSMAVVWAEGGGGGGGGGGGDADADADAHLDVEWNGDDGGAAWWME
YFTQRRDGPMLRVVGALLGALCALALAIGALHRAERKRDRVLAARERERL
WGFA*

mRNA from alignment at tig00004406_pilon:524041..526155-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2795.t1 ID=Gchil2795.t1|Name=Gchil2795.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2115bp|location=Sequence derived from alignment at tig00004406_pilon:524041..526155- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGACCGCGATGGGCGCCGCCGTCACCGCCGCCACCACCACGGACCC
GATGATGGCGTCGCGTCGCGCCCCGCTGCCTGTGCTGCTGCTGCTGCTGC
TGCTGCTGCTTCTTCTACCGTGCCAGCCGCGCGCCATCACCATGCCGCGT
GCGCACGGTTCGCGCAGCGCGCCGCCCGCCGCGCAGACGCCCTTCTCCGA
CCAGTCGGCCTACGTGGGGCTGTCTTCGTCCGGCGCGCTGCTGGCCACGG
GCGACTTCAACAACGACCGCTTCGCAGACCTGCTCATGCTGGACGCCAAG
TCGCTGCGCAAGGTGTCCGTCATGCAGTGGCAGCACCACAGCTTCTCGTT
CCGTCACGTGGGGCGCGCGTTGGATGTGCGTCAGTTGCACTTGCCGCGCG
CGTTTGGCCGCGTTTCGGCGGCGTATGTGGCTGACTTTGGCAACGACGGC
CGCATGGACGTGTTGCTGTTGGACGGCACGCAGGGCGTGATTGTGTTTGG
TGATGCGCGCGCCAACTTCAACGCCAGCAAGCCTGCGCTGCTGCCGGAGG
TGCCGCGCGTGACGGCCGTCGTGGACGCCGACGGCGACCTGGTACCGGAG
TTGTTTGTGGCGTTTGACAACGGCACGCGCGGCTTCTACAAGTACCACCG
CGACATCAGCGTGCAACGCGATCGCTTCGACCAGCGCGGAAGTGTGCGTT
TCCACCGTTGGGACGCGCATAGCACGTGCGAAGACGGCACGACGGCGCGC
GTGGCGAGCGCGCAGTCGGTGGCGTTCGCCGACATGGACGGCGACTGCCA
GCCCGACCTGGTGCTGGGCACCACCTGCTCGCTGGAGGTGTGGCTCAGCG
GCGCGCGCTCGCACACGCCACTATGGCAGCTTCTCGCCAACGGCTCCCAC
GCGCGCGTCTTCAACCGCTCGCTGTTCGACCACGACGGCGGCGACCATGC
ATTGGTGGCGGCCGATCTGGACGCCGACGGCGCCATGGACATTGGCGTGG
CAAATCGCAAGCGCGGCGACCTTCGCGTGCATCTTAATCGTCAGCCGTGG
CGCGCGCCCGGGGTGTTGTGCTCGGCCACAGATGACTGGCAGCTGCAGAC
GGTGCAAGCGTTGGGAGCCAACGAGCTGACGTTGCGCGAACAGCGACTGG
GTTCGCTGTTCGGGGCCATCTCCGTGCCGCCCGCGCTGCGCGTCGGCGAC
ATGGACCTGGACGGCTGGCCCGACGTGCTGACGGTCGACGCGGCCACCGC
GCTGCCCGTGGTGTTTCGCAACCAACGCAAATGGGCGCGCGACGAGCGCG
ATGGCAGCGGCAGCCGTGGCGGTGACAACGACAGAGATGACGACGAAGAT
GACATGCCGCTGCGACGCGTGGATGCACGCACGCTACGCGCGCTGCAACA
CGGCAACGGCGGAACGGTGGCGGCCGGATGGCTGGACACGGACGAAAACG
GACGACAGGACGTGGTGGTGGTGCGCGCCAACGAGACGCGCCTCATGTGG
AACGGCGGCGGCGGCGGCGGCCAACGGCTGTTCTTCAAGGGCACGGTGCT
GAGCGCGTTGGGGTTCCGACTGCAGCCGAGGCCTTTTGCGCCCGTCGTGG
GCAATACGGTCAAACTGAGCTACGCGGAGCGCGGGGCGTCGTGGCGACGG
CGACGAAGGCGGCGCATTTGCAGCCAGGGCGGCGGCAGCGGCGGCGCGTG
GACGCTCGCCGGCAGCGGGTGCGTGTTCGGGCTGGGCGCCATCGCCAACT
ACGTGGAGGAGCTCAGCGTGGGCGGCGGCGGCGGCTCGCGGTCGTGGACC
AACCTCATGCCCAACTCGATGGCCGTGGTGTGGGCCGAAGGCGGCGGCGG
CGGCGGCGGCGGCGGGGGAGGGGACGCAGACGCAGACGCGGACGCGCACT
TGGATGTGGAGTGGAACGGTGACGACGGCGGGGCGGCATGGTGGATGGAG
TACTTCACGCAGCGGCGCGACGGCCCCATGCTGCGCGTGGTGGGCGCGCT
GTTGGGCGCGCTATGCGCGCTGGCGCTGGCCATCGGCGCGCTCCACCGCG
CCGAACGCAAGCGCGACCGCGTGCTGGCCGCGCGCGAGCGCGAGCGTCTC
TGGGGCTTCGCGTGA

Coding sequence (CDS) from alignment at tig00004406_pilon:524041..526155-

>Gchil2795.t1 ID=Gchil2795.t1|Name=Gchil2795.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2115bp|location=Sequence derived from alignment at tig00004406_pilon:524041..526155- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGACCGCGATGGGCGCCGCCGTCACCGCCGCCACCACCACGGACCC
GATGATGGCGTCGCGTCGCGCCCCGCTGCCTGTGCTGCTGCTGCTGCTGC
TGCTGCTGCTTCTTCTACCGTGCCAGCCGCGCGCCATCACCATGCCGCGT
GCGCACGGTTCGCGCAGCGCGCCGCCCGCCGCGCAGACGCCCTTCTCCGA
CCAGTCGGCCTACGTGGGGCTGTCTTCGTCCGGCGCGCTGCTGGCCACGG
GCGACTTCAACAACGACCGCTTCGCAGACCTGCTCATGCTGGACGCCAAG
TCGCTGCGCAAGGTGTCCGTCATGCAGTGGCAGCACCACAGCTTCTCGTT
CCGTCACGTGGGGCGCGCGTTGGATGTGCGTCAGTTGCACTTGCCGCGCG
CGTTTGGCCGCGTTTCGGCGGCGTATGTGGCTGACTTTGGCAACGACGGC
CGCATGGACGTGTTGCTGTTGGACGGCACGCAGGGCGTGATTGTGTTTGG
TGATGCGCGCGCCAACTTCAACGCCAGCAAGCCTGCGCTGCTGCCGGAGG
TGCCGCGCGTGACGGCCGTCGTGGACGCCGACGGCGACCTGGTACCGGAG
TTGTTTGTGGCGTTTGACAACGGCACGCGCGGCTTCTACAAGTACCACCG
CGACATCAGCGTGCAACGCGATCGCTTCGACCAGCGCGGAAGTGTGCGTT
TCCACCGTTGGGACGCGCATAGCACGTGCGAAGACGGCACGACGGCGCGC
GTGGCGAGCGCGCAGTCGGTGGCGTTCGCCGACATGGACGGCGACTGCCA
GCCCGACCTGGTGCTGGGCACCACCTGCTCGCTGGAGGTGTGGCTCAGCG
GCGCGCGCTCGCACACGCCACTATGGCAGCTTCTCGCCAACGGCTCCCAC
GCGCGCGTCTTCAACCGCTCGCTGTTCGACCACGACGGCGGCGACCATGC
ATTGGTGGCGGCCGATCTGGACGCCGACGGCGCCATGGACATTGGCGTGG
CAAATCGCAAGCGCGGCGACCTTCGCGTGCATCTTAATCGTCAGCCGTGG
CGCGCGCCCGGGGTGTTGTGCTCGGCCACAGATGACTGGCAGCTGCAGAC
GGTGCAAGCGTTGGGAGCCAACGAGCTGACGTTGCGCGAACAGCGACTGG
GTTCGCTGTTCGGGGCCATCTCCGTGCCGCCCGCGCTGCGCGTCGGCGAC
ATGGACCTGGACGGCTGGCCCGACGTGCTGACGGTCGACGCGGCCACCGC
GCTGCCCGTGGTGTTTCGCAACCAACGCAAATGGGCGCGCGACGAGCGCG
ATGGCAGCGGCAGCCGTGGCGGTGACAACGACAGAGATGACGACGAAGAT
GACATGCCGCTGCGACGCGTGGATGCACGCACGCTACGCGCGCTGCAACA
CGGCAACGGCGGAACGGTGGCGGCCGGATGGCTGGACACGGACGAAAACG
GACGACAGGACGTGGTGGTGGTGCGCGCCAACGAGACGCGCCTCATGTGG
AACGGCGGCGGCGGCGGCGGCCAACGGCTGTTCTTCAAGGGCACGGTGCT
GAGCGCGTTGGGGTTCCGACTGCAGCCGAGGCCTTTTGCGCCCGTCGTGG
GCAATACGGTCAAACTGAGCTACGCGGAGCGCGGGGCGTCGTGGCGACGG
CGACGAAGGCGGCGCATTTGCAGCCAGGGCGGCGGCAGCGGCGGCGCGTG
GACGCTCGCCGGCAGCGGGTGCGTGTTCGGGCTGGGCGCCATCGCCAACT
ACGTGGAGGAGCTCAGCGTGGGCGGCGGCGGCGGCTCGCGGTCGTGGACC
AACCTCATGCCCAACTCGATGGCCGTGGTGTGGGCCGAAGGCGGCGGCGG
CGGCGGCGGCGGCGGGGGAGGGGACGCAGACGCAGACGCGGACGCGCACT
TGGATGTGGAGTGGAACGGTGACGACGGCGGGGCGGCATGGTGGATGGAG
TACTTCACGCAGCGGCGCGACGGCCCCATGCTGCGCGTGGTGGGCGCGCT
GTTGGGCGCGCTATGCGCGCTGGCGCTGGCCATCGGCGCGCTCCACCGCG
CCGAACGCAAGCGCGACCGCGTGCTGGCCGCGCGCGAGCGCGAGCGTCTC
TGGGGCTTCGCGTGA